BAC Information

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BAC

Clone NameB6Ng01-150H22
Chromosome8 (Build37)
Map Location 53,804,140 - 53,871,393
singlet/doubletdoublet
Overlap geneLOC676688
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneAga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H22.bB6Ng01-150H22.g
ACCDH946559DH946560
length5971,151
definitionDH946559|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H22, 5' end.DH946560|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,804,140 - 53,804,736)(53,870,225 - 53,871,393)
sequence
gaattcattatgaacattttttcaaaacaaaaattttcattattaaatat
taacttttgttttgaaaaaacaaaatttagaacaacatatagaaaaaaag
aggtttaactgaacatgaaaaacccactctgaatgttggtagcactatcc
cattgtttgggatctagggctagcagagacccacactctaacattggacc
gaactctgggaccattatggaagagttggggaagaattgcacatcccaga
gtggatagcaactccacaggaagaccaagagggtcaactaacctcgacct
taggggctctcagagactgaaccaccacccaaccaaagagcatacacaag
ctggaccgaagctcctggcccatatgtaacattgtatcagagtcttcatg
agggtcctccagtaactggtcaggggctgtccctaaagctgttgcctgcc
tgtggaatacatttccataactgggctgggcttccttgtcaggcctcagt
gggtgggagaggatgaacctaaccctgcagggacttgatgttgcagttta
gtaatggaggtgggggatggggggacatggtctcagaagaaaatgga
gaattccatcctattcaatttggaatgaatagtgagggacctgaatgtaa
cttattttattaaaaaaggaatatgaaaaaacattattttcttttgctat
catcaactaatgtagagtttacagtaataaaacaagaaaattgaactatg
acattggtggtagcaatttgatgaagaagaagaagaaacatctggaagta
ataaaaaataaggagaaaaatttatctttaccatctcaagaaatacaaaa
gaaatttgtgcatttgagatggatgttaaagggaaattcatgcagttttg
acacatatctggagaaaaaacggtggaaataattgaaataaagattttaa
aactattggacaacttaaaatttctgaaagaaaatatttcaggcattgga
agacaagcaaggagttaggaaaggaaatgtcaaagacaagttgaagccct
taaactgactgatattaaaatatctggacattctgttgataactagtacc
aattatgataaatggaattatagaaatatttctggcatgcctaaagcaat
aggtataatgggtctgtaagttacttacagtcatagatctgagagagctc
ataggatccacaaagaagactaaaaattgttggtgatggttgttttttag
aaaatcatcatttgagttctttggtaattgggctctgagtgcctccaaaa
agatttaaaacaatcatccatcctgaccaagtaggttttattccagggat
tcagggatggtttaatatacggaaatccatcaacgtaatccattatataa
acaaactcaaacccaaaaaccacatgatcatctccttagatacggagaaa
gcatttgacaaaatccaacacccattcatgataaaactcttggaaagatc
aggaatttaaggcccatacctaaacatgataaaacaatctacagcaaacc
agtagccacatcaaagtaaatgtgagaagatggaagcatcccactaaaat
cagactagacagctgcccacttctcctacttattcacattgtacttgaag
tcctagacagagcattcgacaaccaaagaagatcagggatgcaaattgaa
ggagaaagtcaacctatcaactttatgcgatgaatggatagtatataagt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53804140_53804736
seq2: B6Ng01-150H22.b_38_634

seq1  GAATTCATTATGAACATTTTTTCAAAACAAAAATTTTCATTATTAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGAACATTTTTTCAAAACAAAAATTTTCATTATTAAATAT  50

seq1  TAACTTTTGTTTTGAAAAAACAAAATTTAGAACAACATATAGAAAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTGTTTTGAAAAAACAAAATTTAGAACAACATATAGAAAAAAAG  100

seq1  AGGTTTAACTGAACATGAAAAACCCACTCTGAATGTTGGTAGCACTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAACTGAACATGAAAAACCCACTCTGAATGTTGGTAGCACTATCC  150

seq1  CATTGTTTGGGATCTAGGGCTAGCAGAGACCCACACTCTAACATTGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGGGATCTAGGGCTAGCAGAGACCCACACTCTAACATTGGACC  200

seq1  GAACTCTGGGACCATTATGGAAGAGTTGGGGAAGAATTGCACATCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGGACCATTATGGAAGAGTTGGGGAAGAATTGCACATCCCAGA  250

seq1  GTGGATAGCAACTCCACAGGAAGACCAAGAGGGTCAACTAACCTCGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGCAACTCCACAGGAAGACCAAGAGGGTCAACTAACCTCGACCT  300

seq1  TAGGGGCTCTCAGAGACTGAACCACCACCCAACCAAAGAGCATACACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTCTCAGAGACTGAACCACCACCCAACCAAAGAGCATACACAAG  350

seq1  CTGGACCGAAGCTCCTGGCCCATATGTAACATTGTATCAGAGTCTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCGAAGCTCCTGGCCCATATGTAACATTGTATCAGAGTCTTCATG  400

seq1  AGGGTCCTCCAGTAACTGGTCAGGGGCTGTCCCTAAAGCTGTTGCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTCCAGTAACTGGTCAGGGGCTGTCCCTAAAGCTGTTGCCTGCC  450

seq1  TGTGGAATACATTTCCATAACTGGGCTGGGCTTCCTTGTCAGGCCTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATACATTTCCATAACTGGGCTGGGCTTCCTTGTCAGGCCTCAGT  500

seq1  GGGTGGGAGAGGATGAACCTAACCCTGCAGGGACTTGATGTTGCAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGAGGATGAACCTAACCCTGCAGGGACTTGATGTTGCAGTTTA  550

seq1  GTAATGGAGGTGGGGGATGGGGGGACATGGTCTCAGAAGAAAATGGA  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGGTGGGGGATGGGGGGACATGGTCTCAGAAGAAAATGGA  597

seq1: chr8_53870225_53871393
seq2: B6Ng01-150H22.g_66_1216 (reverse)

seq1  CACTTATATATACTATCATATCATCTGCATAAAG-TGATATGTTGACTTC  49
      ||||  |||||||||||   ||||| |||||||| ||||| |||||||| 
seq2  CACT--TATATACTATCCATTCATC-GCATAAAGTTGATAGGTTGACTTT  47

seq1  TTCCTTTCCAATTTGCATCCCCTTGATCTTCTTTTGTTGTCGAATTGCTC  99
       |||||  |||||||||||||  ||||||||||| ||||||||| |||||
seq2  CTCCTT--CAATTTGCATCCC--TGATCTTCTTTGGTTGTCGAA-TGCTC  92

seq1  TGTCTAGGACTTCAAGTACAATGTTGAATAGGTAGGGAGAAGGTGGGCAG  149
      ||||||||||||||||||||||| |||||| ||| |||||| ||||||||
seq2  TGTCTAGGACTTCAAGTACAATG-TGAATAAGTA-GGAGAA-GTGGGCAG  139

seq1  CCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCATCTTCTCACCATT  199
      |  ||||||||  ||||||||||||||| |||||||||||||||| ||||
seq2  C--TGTCTAGT--CTGATTTTAGTGGGA-TGCTTCCATCTTCTCA-CATT  183

seq1  TACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGTTTTTATCATGTTTA  249
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TACTTTGATG-TGGCTACTGGTTTGCTGTAGATTG-TTTTATCATGTTTA  231

seq1  GGTATGGGCCTTAAATTCCTGATCTTTCCAAGAGTTTTATCATGAATGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGCCTTAAATTCCTGATCTTTCCAAGAGTTTTATCATGAATGGG  281

seq1  TGTTGGATTTTGTCAAATGCTTTCTCCGTATCTAAGGAGATGATCATGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATTTTGTCAAATGCTTTCTCCGTATCTAAGGAGATGATCATGTG  331

seq1  GTTTTTGGGTTTGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGGTTTGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCC  381

seq1  GTATATTAAACCATCCCTGAATCCCTGGAATAAAACCTACTTGGTCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAACCATCCCTGAATCCCTGGAATAAAACCTACTTGGTCAGGA  431

seq1  TGGATGATTGTTTTAAATCTTTTTGGAGGCACTCAGAGCCCAATTACCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATTGTTTTAAATCTTTTTGGAGGCACTCAGAGCCCAATTACCAA  481

seq1  AGAACTCAAATGATGATTTTCTAAAAAACAACCATCACCAACAATTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAATGATGATTTTCTAAAAAACAACCATCACCAACAATTTTTA  531

seq1  GTCTTCTTTGTGGATCCTATGAGCTCTCTCAGATCTATGACTGTAAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTGTGGATCCTATGAGCTCTCTCAGATCTATGACTGTAAGTAA  581

seq1  CTTACAGACCCATTATACCTATTGCTTTAGGCATGCCAGAAATATTTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACCCATTATACCTATTGCTTTAGGCATGCCAGAAATATTTCTA  631

seq1  TAATTCCATTTATCATAATTGGTACTAGTTATCAACAGAATGTCCAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATTTATCATAATTGGTACTAGTTATCAACAGAATGTCCAGATA  681

seq1  TTTTAATATCAGTCAGTTTAAGGGCTTCAACTTGTCTTTGACATTTCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCAGTCAGTTTAAGGGCTTCAACTTGTCTTTGACATTTCCTT  731

seq1  TCCTAACTCCTTGCTTGTCTTCCAATGCCTGAAATATTTTCTTTCAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTCCTTGCTTGTCTTCCAATGCCTGAAATATTTTCTTTCAGAAA  781

seq1  TTTTAAGTTGTCCAATAGTTTTAAAATCTTTATTTCAATTATTTCCACCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTGTCCAATAGTTTTAAAATCTTTATTTCAATTATTTCCACCG  831

seq1  TTTTTTCTCCAGATATGTGTCAAAACTGCATGAATTTCCCTTTAACATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCAGATATGTGTCAAAACTGCATGAATTTCCCTTTAACATCC  881

seq1  ATCTCAAATGCACAAATTTCTTTTGTATTTCTTGAGATGGTAAAGATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATGCACAAATTTCTTTTGTATTTCTTGAGATGGTAAAGATAAA  931

seq1  TTTTTCTCCTTATTTTTTATTACTTCCAGATGTTTCTTCTTCTTCTTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCTTATTTTTTATTACTTCCAGATGTTTCTTCTTCTTCTTCAT  981

seq1  CAAATTGCTACCACCAATGTCATAGTTCAATTTTCTTGTTTTATTACTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCTACCACCAATGTCATAGTTCAATTTTCTTGTTTTATTACTGT  1031

seq1  AAACTCTACATTAGTTGATGATAGCAAAAGAAAATAATGTTTTTTCATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTACATTAGTTGATGATAGCAAAAGAAAATAATGTTTTTTCATAT  1081

seq1  TCCTTTTTTAATAAAATAAGTTACATTCAGGTCCCTCACTATTCATTCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTAATAAAATAAGTTACATTCAGGTCCCTCACTATTCATTCCA  1131

seq1  AATTGAATAGGATGGAATTC  1169
      ||||||||||||||||||||
seq2  AATTGAATAGGATGGAATTC  1151