BAC Information

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BAC

Clone NameB6Ng01-151H22
Chromosome8 (Build37)
Map Location 108,959,526 - 109,112,327
singlet/doubletdoublet
Overlap gene6030452D12Rik, Cdh3, LOC100042734
Upstream geneLrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
Downstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H22.bB6Ng01-151H22.g
ACCDH947299DH947300
length1,160695
definitionDH947299|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H22, 5' end.DH947300|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,959,526 - 108,960,683)(109,111,634 - 109,112,327)
sequence
gaattctttgtcagttgacaattcactgtctctggcctcaaagtcacttt
gtagccagcccaaggcagctcaaattggtggcagtcctcttgcctcagac
tcccagatcctggggaccacctgggggtcactgtggctatctcatgcatt
tctttgtagccctatctccccctttacccacctctgccatgtgtttatca
gtatctttgagtttttgtatggctgtataaaatgggtagtggtccttcat
gttaatatgactttactttaattgttttatatttatttcatatcagcacg
catacttgctgtggaagtatagaggtcaggagataacctgcgagggtagc
tagtctctgactaccatgtgtatcctagagaatgaactcaggttgttatg
ggtagggacaagcacttttacaccctaggccaccttaccagtcataaatt
cttttctaagaggcatcttgctgttactagtcagctgactcgggagggcc
cgttggtcttctcaaatagaaatcatagttaaagggaggtaactatttta
gtattggtagacccggtcccttgagtgtcaaaagcttgtgggctggctga
cagactcagaaccgtatagctttatgtcccaagaactaaaagctaatggc
tccaagctttagggtccacagacctatggctgtagggactcaccctagag
gctttaatgtctctgggctttgtcaatagaccagctctcagtagcagcca
gtgtaacctcagactcagaagcagcagcagcaacaacaacaacagaagca
gcagcagcagcagcgaacatcacctagtgttggagctctcaaacctcagc
catatccctttacatcttgcatgctgctatgggtgtaaggaccatcaact
ctcaaggcttagcagcttccaggactcttccagcggtcaggcctgcatcc
ctcatctttgggccttggataacctctatttccagggtcctgtatcatct
tgcctgtctctgcatctctctctgaacttctggatgccctcttgccattg
ctgttgctgccacggctgccttgcttgtcttctcacgctatcagctcagc
ccactgtaacctgtgataggaaatcaaaggtaagcaaggaagttatatct
ccggcactca
gaattccaggtagcctaggctggtctaaaactcaccatgtagatgaggct
agccctgaacttctgattttcctgcctcgatctcctaaatagtaggatta
cagatgtttgctaacgtgcccaaattgcttttattttttaaattaaaaca
ttgttttcttagactatatattattctatatctagaagtgatgtgtggtg
tgtgggtgtgtgtgtacatgcgcacacgcacagggtacatggatgtgtgt
gtgtgtaaattttccttactataaggaactttgaagccagcatgataatg
cacacttgtaattccagccctaaggaggctggggcaggaggattataaat
tggagaccagcctggccaacatagggagttccaagccagcatgaactaca
caatgaaaccctccctcaaaaaacgtcaagggaggaaagaaactttgtgt
ctcactttttttttttttttcaattcccaggagctagccagaacatattg
tagggaactggctggtgtgatctgaaagcaaaatggttttccttcagtaa
ctctgtttcccctctaagataacaaacaagcctagaagaagttcccagtt
ttcttctaaccctagaaagtttgagcccatttaattgagttgattaatct
acttttttattagttagattgtttgtttttgaaaaagccttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108959526_108960683
seq2: B6Ng01-151H22.b_43_1202

seq1  GAATTCTTTGTCAGTTGACAATTCACTGTCTCTGGCCTCAAAGTCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCAGTTGACAATTCACTGTCTCTGGCCTCAAAGTCACTTT  50

seq1  GTAGCCAGCCCAAGGCAGCTCAAATTGGTGGCAGTCCTCTTGCCTCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGCCCAAGGCAGCTCAAATTGGTGGCAGTCCTCTTGCCTCAGAC  100

seq1  TCCCAGATCCTGGGGACCACCTGGGGGTCACTGTGGCTATCTCATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATCCTGGGGACCACCTGGGGGTCACTGTGGCTATCTCATGCATT  150

seq1  TCTTTGTAGCCCTATCTCCCCCTTTACCCACCTCTGCCATGTGTTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGCCCTATCTCCCCCTTTACCCACCTCTGCCATGTGTTTATCA  200

seq1  GTATCTTTGAGTTTTTGTATGGCTGTATAAAATGGGTAGTGGTCCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGAGTTTTTGTATGGCTGTATAAAATGGGTAGTGGTCCTTCAT  250

seq1  GTTAATATGACTTTACTTTAATTGTTTTATATTTATTTCATATCAGCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATGACTTTACTTTAATTGTTTTATATTTATTTCATATCAGCACG  300

seq1  CATACTTGCTGTGGAAGTATAGAGGTCAGGAGATAACCTGCGAGGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGCTGTGGAAGTATAGAGGTCAGGAGATAACCTGCGAGGGTAGC  350

seq1  TAGTCTCTGACTACCATGTGTATCCTAGAGAATGAACTCAGGTTGTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTGACTACCATGTGTATCCTAGAGAATGAACTCAGGTTGTTATG  400

seq1  GGTAGGGACAAGCACTTTTACACCCTAGGCCACCTTACCAGTCATAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGACAAGCACTTTTACACCCTAGGCCACCTTACCAGTCATAAATT  450

seq1  CTTTTCTAAGAGGCATCTTGCTGTTACTAGTCAGCTGACTCGGGAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAGAGGCATCTTGCTGTTACTAGTCAGCTGACTCGGGAGGGCC  500

seq1  CGTTGGTCTTCTCAAATAGAAATCATAGTTAAAGGGAGGTAACTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGTCTTCTCAAATAGAAATCATAGTTAAAGGGAGGTAACTATTTTA  550

seq1  GTATTGGTAGACCCGGTCCCTTGAGTGTCAAAAGCTTGTGGGCTGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTAGACCCGGTCCCTTGAGTGTCAAAAGCTTGTGGGCTGGCTGA  600

seq1  CAGACTCAGAACCGTATAGCTTTATGTCCCAAGAACTAAAAGCTAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAACCGTATAGCTTTATGTCCCAAGAACTAAAAGCTAATGGC  650

seq1  TCCAAGCTTTAGGGTCCACAGACCTATGGCTGTAGGGACTCACCCTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTTAGGGTCCACAGACCTATGGCTGTAGGGACTCACCCTAGAG  700

seq1  GCTTTAATGTCTCTGGGCTTTGTCAATAGACCAGCTCTCAGTAGCAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATGTCTCTGGGCTTTGTCAATAGACCAGCTCTCAGTAGCAGCCA  750

seq1  GTGTAACCTCAGACTCAGAAGCAGCAGCAGCAACAACAACAACAGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCTCAGACTCAGAAGCAGCAGCAGCAACAACAACAACAGAAGCA  800

seq1  GCAGCAGCAGCAGCGAACATCACCTAGTGTTGGAGCTCTCAAACCTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAGCAGCGAACATCACCTAGTGTTGGAGCTCTCAAACCTCAGC  850

seq1  CATATCCCTTTACATCTTGCATGCTGCTATGGGTGTAAGGACCATCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCTTTACATCTTGCATGCTGCTATGGGTGTAAGGACCATCAACT  900

seq1  CTCAAGGCTTAGCAGCTTCCAGGAACTCTTCCAGCGGTCAGGGCCTGCAT  950
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CTCAAGGCTTAGCAGCTTCCAGG-ACTCTTCCAGCGGTCA-GGCCTGCAT  948

seq1  CCCTCATCTTT-GGCCTTGGATAACCTCTATTTCCAGGGTCCTGTATCAT  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTTTGGGCCTTGGATAACCTCTATTTCCAGGGTCCTGTATCAT  998

seq1  CTTGCCTGTCTCTGCATCTCTCTCTGGAACTCTGGATGCCCTCTTGCCAT  1049
      |||||||||||||||||||||||||| |  ||||||||||||||||||||
seq2  CTTGCCTGTCTCTGCATCTCTCTCTGAACTTCTGGATGCCCTCTTGCCAT  1048

seq1  TGCTGTTGCTGCCACGGCTGCTTTGCTTGTCTTCTCACGCTACCAGCTCA  1099
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TGCTGTTGCTGCCACGGCTGCCTTGCTTGTCTTCTCACGCTATCAGCTCA  1098

seq1  GCCCACTGT-ACCTGTGATA-GAAATCAAAAGTAAGCAAAGAAGTTTAGT  1147
      ||||||||| |||||||||| ||||||||| |||||||| ||||||   |
seq2  GCCCACTGTAACCTGTGATAGGAAATCAAAGGTAAGCAAGGAAGTTATAT  1148

seq1  CT-CGGCACTCA  1158
      || |||||||||
seq2  CTCCGGCACTCA  1160

seq1: chr8_109111634_109112327
seq2: B6Ng01-151H22.g_68_762 (reverse)

seq1  AGAG-AGGCTTTCTCAAAAACAAACAATCTAACTAATAAATAAGTAGATT  49
      |||| ||||||| ||||||||||||||||||||||||||| |||||||||
seq2  AGAGAAGGCTTTTTCAAAAACAAACAATCTAACTAATAAAAAAGTAGATT  50

seq1  AATCAACTCAATTAAATGGGCTCAAACTTTCTAGGGTTAGAAGAAAACTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTCAATTAAATGGGCTCAAACTTTCTAGGGTTAGAAGAAAACTG  100

seq1  GGAACTTCTTCTAGGCTTGTTTGTTATCTTAGAGGGGAAACAGAGTTACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCTTCTAGGCTTGTTTGTTATCTTAGAGGGGAAACAGAGTTACT  150

seq1  GAAGGAAAACCATTTTGCTTTCAGATCACACCAGCCAGTTCCCTACAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAACCATTTTGCTTTCAGATCACACCAGCCAGTTCCCTACAATA  200

seq1  TGTTCTGGCTAGCTCCTGGGAATTGAAAAAAAAAAAAAAAGTGAGACACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCTAGCTCCTGGGAATTGAAAAAAAAAAAAAAAGTGAGACACA  250

seq1  AAGTTTCTTTCCTCCCTTGACGTTTTTTGAGGGAGGGTTTCATTGTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTTCCTCCCTTGACGTTTTTTGAGGGAGGGTTTCATTGTGTAG  300

seq1  TTCATGCTGGCTTGGAACTCCCTATGTTGGCCAGGCTGGTCTCCAATTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTGGCTTGGAACTCCCTATGTTGGCCAGGCTGGTCTCCAATTTA  350

seq1  TAATCCTCCTGCCCCAGCCTCCTTAGGGCTGGAATTACAAGTGTGCATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCCTGCCCCAGCCTCCTTAGGGCTGGAATTACAAGTGTGCATTA  400

seq1  TCATGCTGGCTTCAAAGTTCCTTATAGTAAGGAAAATTTACACACACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGGCTTCAAAGTTCCTTATAGTAAGGAAAATTTACACACACACA  450

seq1  CATCCATGTACCCTGTGCGTGTGCGCATGTACACACACACCCACACACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTACCCTGTGCGTGTGCGCATGTACACACACACCCACACACCA  500

seq1  CACATCACTTCTAGATATAGAATAATATATAGTCTAAGAAAACAATGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTTCTAGATATAGAATAATATATAGTCTAAGAAAACAATGTTT  550

seq1  TAATTTAAAAAATAAAAGCAATTTGGGCACGTTAGCAAACATCTGTAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAAAATAAAAGCAATTTGGGCACGTTAGCAAACATCTGTAATC  600

seq1  CTACTATTTAGGAGATCGAGGCAGGAAAATCAGAAGTTCAGGGCTAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTTAGGAGATCGAGGCAGGAAAATCAGAAGTTCAGGGCTAGCCT  650

seq1  CATCTACATGGTGAGTTTTAGACCAGCCTAGGCTACCTGGAATTC  694
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATGGTGAGTTTTAGACCAGCCTAGGCTACCTGGAATTC  695