BAC Information

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BAC

Clone NameB6Ng01-154J05
Chromosome8 (Build37)
Map Location 51,224,097 - 51,389,303
singlet/doubletdoublet
Overlap genenone
Upstream gene4930555F03Rik, LOC100039919, EG667495
Downstream geneLOC100039954, LOC100039966, LOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J05.bB6Ng01-154J05.g
ACCDH949583DH949584
length1,1841,165
definitionDH949583|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J05, 5' end.DH949584|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,224,097 - 51,225,294)(51,388,124 - 51,389,303)
sequence
gaattcctgacagcatgtttgtaaaaagcttagaatttcaatgataagca
tgagtgaaacttggtgttatcatccttggtcttaatcctagtgactgaga
tacaaaaagattgataatctcaggaatgataaaactagtgattgagattg
cagaatgtggactgaggtatgttagaaggtcacaactttcccctctactt
ccaaagttctgaaaagacaagatgtctggagaataagttaagaagcaatg
atcaatgatgtcaatcaatcatgacgtttagtgtttcgacataatagaag
ggacacaaaaaaatcctaaatgaaagggttcatgaatcatttcaattggt
gcatacattgatgagataaaatgatatgacagaagtgacctgggagcttt
gcaccatttctcatgatttgtcttgtgtgcattttcattaagctcttcat
taacatcctttataagaagctggccaatgcaaataaagtattttcttaaa
ttcaataaaccactgttgccaaatattaaaacaaaaattgtgggcaacac
aggaattctgtacttcaaactggaggctaatattgatagaaggggattct
tctcaaactgcgtcctcaagctattaactttgagtaagtgaatggatgta
tgggacaatggaatactctttggtgctcagagacaactgtagaaaggctt
ggtgtgaaagcccacatactgagtgttatacctgtctggagcagagggac
atttcctccttctggaatgtctgacacctctgcattatggtcacctcatt
gagtctgccctttctactacatcctctcatgcatgaatatttgctgtaac
atgtattcccaaaaaagcattgcatagagactagaaataaattaagagta
tattaaaattacaatcaaattgagaaaatattccacctaatttgtgctga
aaccctctttagagaagaatatcaccaataaattcacaaagttaaaaaat
atcatttctaatgccgccataacacagtcttccctgatggaacctctgag
atgattgctaggtatacatttctggatgttgactttaaaaaaatccttca
attttcttctcaatgtaattcaatgactattaatgagtttaaatttttta
tttaccagaatgtaacaacatgcatctaccaatc
gaattcttttcttttctatctttaaaaaatgtttggttttaattattaat
ttttattttttattaaaaatagattttttcttatataatatacccctcct
cccaatagtaccttgaccagtcatcatcagaaaggtttcttcccatagca
gatggatgactttcttaccaggtatctagaaaaaaatcactctcgttgaa
ttgataaaatgtcactgctctttgatgggaaggagtgctgaagaacataa
gagttgaatttctttattctgtaagaggagaaggtggctggcttgtgtgt
tgtctgcttgcatgcctgtcatcttcctaccttccagaaaagtgacaaga
taacttagcctgttgaataagataaagccaaaggcctgtcacgttgtttg
gagcaagcttttgctttatggttcggcatccgtgaaacttgttcctcctt
ctcactagaatgcagcagccattcaaaggagatgtagggggaaaaaatta
agacttcagcttcgatggtgctgagacagtaaaaacaccagcagtgacta
ctgcacaaattcagatggcctgtcacgtaaatagaaaaagttctgtgccc
agggtgccggattggcgtttgctcacaatgacatatactttgccatcttg
tcaatccagacctctcattagctgagcataatcttaataacacctggctt
gcagtgtggcggggaggagagaattatgtttatggaaactgctttgcaaa
ttgtaaaatgttctacaaagggtgcttgctattgctcataaaatcaggcg
ttccattttccacatctaattataaagctggatgaaaatggctaagagga
gagaagaagtattctgaaagtgaaatggatggatgggaatgaattattaa
catcattatcttctgtgattgtgtctactcgagttactcggttcttgggt
tcagcccaaaacacctagaggaagttatttttgtaatcgtgtttcttctg
cattcaattgcctgtagagttgttgctgattactatggcagaaaaaaaaa
aatttgttatagtttactaaaggatatttttctttaaaatgatggaaaaa
tgaatcatgtatttttggagaagggtagctcagaaaagcatacatgtgta
catttggttcctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51224097_51225294
seq2: B6Ng01-154J05.b_48_1231

seq1  GAATTCCTGACAGCATGTTTGTAAAAAGCTTAGAATTTCAATGATAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACAGCATGTTTGTAAAAAGCTTAGAATTTCAATGATAAGCA  50

seq1  TGAGTGAAACTTGGTGTTATCATCCTTGGTCTTAATCCTAGTGACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAACTTGGTGTTATCATCCTTGGTCTTAATCCTAGTGACTGAGA  100

seq1  TACAAAAAGATTGATAATCTCAGGAATGATAAAACTAGTGATTGAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGATTGATAATCTCAGGAATGATAAAACTAGTGATTGAGATTG  150

seq1  CAGAATGTGGACTGAGGTATGTTAGAAGGTCACAACTTTCCCCTCTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGGACTGAGGTATGTTAGAAGGTCACAACTTTCCCCTCTACTT  200

seq1  CCAAAGTTCTGAAAAGACAAGATGTCTGGAGAATAAGTTAAGAAGCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTCTGAAAAGACAAGATGTCTGGAGAATAAGTTAAGAAGCAATG  250

seq1  ATCAATGATGTCAATCAATCATGACGTTTAGTGTTTCGACATAATAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGATGTCAATCAATCATGACGTTTAGTGTTTCGACATAATAGAAG  300

seq1  GGACACAAAAAAATCCTAAATGAAAGGGTTCATGAATCATTTCAATTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAAAAAATCCTAAATGAAAGGGTTCATGAATCATTTCAATTGGT  350

seq1  GCATACATTGATGAGATAAAATGATATGACAGAAGTGACCTGGGAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATTGATGAGATAAAATGATATGACAGAAGTGACCTGGGAGCTTT  400

seq1  GCACCATTTCTCATGATTTGTCTTGTGTGCATTTTCATTAAGCTCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTTCTCATGATTTGTCTTGTGTGCATTTTCATTAAGCTCTTCAT  450

seq1  TAACATCCTTTATAAGAAGCTGGCCAATGCAAATAAAGTATTTTCTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCTTTATAAGAAGCTGGCCAATGCAAATAAAGTATTTTCTTAAA  500

seq1  TTCAATAAACCACTGTTGCCAAATATTAAAACAAAAATTGTGGGCAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAACCACTGTTGCCAAATATTAAAACAAAAATTGTGGGCAACAC  550

seq1  AGGAATTCTGTACTTCAAACTGGAGGCTAATATTGATAGAAGGGGATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTGTACTTCAAACTGGAGGCTAATATTGATAGAAGGGGATTCT  600

seq1  TCTCAAACTGCGTCCTCAAGCTATTAACTTTGAGTAAGTGAATGGATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTGCGTCCTCAAGCTATTAACTTTGAGTAAGTGAATGGATGTA  650

seq1  TGGGACAATGGAATACTCTTTGGTGCTCAGAGACAACTGTAGAAAGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATGGAATACTCTTTGGTGCTCAGAGACAACTGTAGAAAGGCTT  700

seq1  GGTGTGAAAGCCCACATACTGAGTGTTATACCTGTCTGGAGCAGAGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAAGCCCACATACTGAGTGTTATACCTGTCTGGAGCAGAGGGAC  750

seq1  ATTTCCTCCTTCTGGAATGTCTGACACCTCTGCATTATGGTCACCTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCTTCTGGAATGTCTGACACCTCTGCATTATGGTCACCTCATT  800

seq1  GAGTCTGCCCTTTCTACTACATCCTCTCATGCATGAATATTTGCTGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCCCTTTCTACTACATCCTCTCATGCATGAATATTTGCTGTAAC  850

seq1  ATGTATTCCCAAAAAAGCATTGCATAGAGACTAGAAATAAATTAAGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCCCAAAAAAGCATTGCATAGAGACTAGAAATAAATTAAGAGTA  900

seq1  TATTAAAATTACAATCAAATTGAGAAAATATTCCACCTAATTTGTGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATTACAATCAAATTGAGAAAATATTCCACCTAATTTGTGCTGA  950

seq1  AACCCTCTTTAGAGAAGAATTATCACCAATAAATTCACAAAGTTAAAAAA  1000
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  AACCCTCTTTAGAGAAGAA-TATCACCAATAAATTCACAAAGTT-AAAAA  998

seq1  ATATCATTTCTAATGCCGCCATTACACAGTCTTCCCTGATTGAACCTCTT  1050
      |||||||||||||||||||||| ||||||||||||||||| ||||||| |
seq2  ATATCATTTCTAATGCCGCCATAACACAGTCTTCCCTGATGGAACCTC-T  1047

seq1  GAGATGTATTTGCTAGGTATACATTTCTGGATG-TGACTTTTAAAAAAAA  1099
      ||||||   |||||||||||||||||||||||| |||||||  |||||||
seq2  GAGATG--ATTGCTAGGTATACATTTCTGGATGTTGACTTT--AAAAAAA  1093

seq1  TCCTTCATATTTCTTCTCAAAATGTTAATTCAATGACTATTAATGAGTTT  1149
      |||||||  |||||||||  |||| |||||||||||||||||||||||||
seq2  TCCTTCAATTTTCTTCTC--AATG-TAATTCAATGACTATTAATGAGTTT  1140

seq1  TAAATCTTTATTTACCAAAGAATGTATCAACATGCATTTCTACCCAATC  1198
       || | ||||||||||  |||||||| |||||||||  |||| ||||||
seq2  AAATTTTTTATTTACC--AGAATGTAACAACATGCA--TCTA-CCAATC  1184

seq1: chr8_51388124_51389303
seq2: B6Ng01-154J05.g_69_1233 (reverse)

seq1  TAGAGGAACTAAATGTACACATTGTGATGCTTTTTCTGAGCCTTTCCTCT  50
      ||||||||| ||||||||||| ||| |||| ||||||||||    | |||
seq2  TAGAGGAACCAAATGTACACA-TGT-ATGC-TTTTCTGAGCTACCCTTCT  47

seq1  CTCAAAAATACATGATTTCATCTTTTTCATCCTTTTTAAAGAAAATATTC  100
      | ||||||||||||| ||||| |||| ||| | ||||||||||||   ||
seq2  C-CAAAAATACATGA-TTCAT-TTTTCCAT-CATTTTAAAGAAAAATATC  93

seq1  TTTTAGTTAAACTATTA-ACATATTTTTTTTTCTGCCATAGTAATTCCAG  149
       ||||| |||||||| | | || ||||||||||||||||||||||  |||
seq2  CTTTAG-TAAACTATAACAAATTTTTTTTTTTCTGCCATAGTAAT--CAG  140

seq1  CAACAACTCTAACAGGCAATTTGAATGCAGAAGAAACACGATTACAAATA  199
      |||||||||| |||||||| |||||||||||||||||||||||||||| |
seq2  CAACAACTCT-ACAGGCAA-TTGAATGCAGAAGAAACACGATTACAAAAA  188

seq1  TAACTTCCTCTTAGGTGTTTTTGGGCTGAACCCAAGAACCGAGTAACTCG  249
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TAACTTCCTC-TAGGTG-TTTTGGGCTGAACCCAAGAACCGAGTAACTCG  236

seq1  AGTAGACACAATCACAGAAGATAATTGATGTTAATAATTCATTCCCATCC  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTAGACACAATCACAGAAGATAA-TGATGTTAATAATTCATTCCCATCC  285

seq1  ATCCATTTCACTTTCAGAATACTTCTTCTCTCCTCTTAGCCATTTTCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTCACTTTCAGAATACTTCTTCTCTCCTCTTAGCCATTTTCATC  335

seq1  CAGCTTTATAATTAGATGTGGAAAATGGGAACGCCTGATTTTATGAGCAA  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCTTTATAATTAGATGTGGAAAAT-GGAACGCCTGATTTTATGAGCAA  384

seq1  TAGCAAGCACCCTTTGTAGAACATTTTACAATTTGCAAAGCAGTTTCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCACCCTTTGTAGAACATTTTACAATTTGCAAAGCAGTTTCCAT  434

seq1  AAACATAATTCTCTCCTCCCCGCCACACTGCAAGCCAGGTGTTATTAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATTCTCTCCTCCCCGCCACACTGCAAGCCAGGTGTTATTAAGA  484

seq1  TTATGCTCAGCTAATGAGAGGTCTGGATTGACAAGATGGCAAAGTATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTCAGCTAATGAGAGGTCTGGATTGACAAGATGGCAAAGTATATG  534

seq1  TCATTGTGAGCAAACGCCAATCCGGCACCCTGGGCACAGAACTTTTTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGAGCAAACGCCAATCCGGCACCCTGGGCACAGAACTTTTTCTA  584

seq1  TTTACGTGACAGGCCATCTGAATTTGTGCAGTAGTCACTGCTGGTGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTGACAGGCCATCTGAATTTGTGCAGTAGTCACTGCTGGTGTTTT  634

seq1  TACTGTCTCAGCACCATCGAAGCTGAAGTCTTAATTTTTTCCCCCTACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTCAGCACCATCGAAGCTGAAGTCTTAATTTTTTCCCCCTACAT  684

seq1  CTCCTTTGAATGGCTGCTGCATTCTAGTGAGAAGGAGGAACAAGTTTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGAATGGCTGCTGCATTCTAGTGAGAAGGAGGAACAAGTTTCAC  734

seq1  GGATGCCGAACCATAAAGCAAAAGCTTGCTCCAAACAACGTGACAGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCGAACCATAAAGCAAAAGCTTGCTCCAAACAACGTGACAGGCCT  784

seq1  TTGGCTTTATCTTATTCAACAGGCTAAGTTATCTTGTCACTTTTCTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTATCTTATTCAACAGGCTAAGTTATCTTGTCACTTTTCTGGAA  834

seq1  GGTAGGAAGATGACAGGCATGCAAGCAGACAACACACAAGCCAGCCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAGATGACAGGCATGCAAGCAGACAACACACAAGCCAGCCACCT  884

seq1  TCTCCTCTTACAGAATAAAGAAATTCAACTCTTATGTTCTTCAGCACTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTACAGAATAAAGAAATTCAACTCTTATGTTCTTCAGCACTCC  934

seq1  TTCCCATCAAAGAGCAGTGACATTTTATCAATTCAACGAGAGTGATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCAAAGAGCAGTGACATTTTATCAATTCAACGAGAGTGATTTTT  984

seq1  TTCTAGATACCTGGTAAGAAAGTCATCCATCTGCTATGGGAAGAAACCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATACCTGGTAAGAAAGTCATCCATCTGCTATGGGAAGAAACCTT  1034

seq1  TCTGATGATGACTGGTCAAGGTACTATTGGGAGGAGGGGTATATTATATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATGACTGGTCAAGGTACTATTGGGAGGAGGGGTATATTATATA  1084

seq1  AGAAAAAATCTATTTTTAATAAAAAATAAAAATTAATAATTAAAACCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATCTATTTTTAATAAAAAATAAAAATTAATAATTAAAACCAAA  1134

seq1  CATTTTTTAAAGATAGAAAAGAAAAGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAGATAGAAAAGAAAAGAATTC  1165