BAC Information

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BAC

Clone NameB6Ng01-154M01
Chromosome8 (Build37)
Map Location 86,952,211 - 87,097,572
singlet/doubletdoublet
Overlap geneCacna1a
Upstream geneScoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M01.bB6Ng01-154M01.g
ACCDH949713DH949714
length1881,068
definitionDH949713|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M01, 5' end.DH949714|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,097,385 - 87,097,572)(86,952,211 - 86,953,295)
sequence
atgagaacattaaaaacttgactctagagctcagatctcatgtaaatgcc
cctggctttaaccccaggaccagaaaaagggaaaaaaagtgaagagaaga
gaatacaggttgactggggtggtggtggtggtgagacacagagagagaga
gagagagagagagagtgagagagagagagagagagaga
gaattccttggcttttgctctgtgggtagaatggatgacatgaggcggtg
agccagctgggaccatgtctccttcaggaggactaaggagatgcctagca
gccagaacacacagattacagaatcacaaggggcctgggaagcattgcgg
cctgatccctgttgtgtctctggtcctacgctccaattctgccccttcat
tccataccatagagccagctcatttgcataatggtgcccattccacctgt
gtcactccctacacgttttccataggtagctcctccctaggcctcctatt
ccaagaggcccagcttcttcacttattgaatagctaatgtaagcatgtga
aatctgtgggcattctcgatgcacaaagaacttccaggatattttgatgt
atctcgttccatacttttctatggatacagacttgtgattacaattccct
gtccttcttgggacacatcatagcaccatgtctggtcaggcaggttatac
actgaatagaggtagcagatcacacatcagaggcatcacatagctgtata
tttgttgatggaatttaagaatcttgctctgacagattgaggatattatg
acagcttttgacggatgggcttaacaactcgagaaaggggcgtcttgttt
aaattctcaccgtggtgctgtatgccttggcagaaccccagaaaagagtt
ttggtaatatctggtgatattctgcttgctggggtttgggagcctcctgt
cactgcctctgaggtctggctgttctaaacaacactgcagggaacatctt
tgtggtgaggatctgtctgcggtgctggtaagttctcaatggtcttgctg
tctccagaccgaagaccattgttacattgttactactgcctttgaatttg
tgggaggggctctgagcaagctgattggtgtattcagatgtggatgactc
agagagggaggcaacagtggtccacagaaagctacacgtttgagttgggt
aatttattgccattgtctggagacattttttgtttcattgatgtagttgc
aaggttggatgctgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87097385_87097572
seq2: B6Ng01-154M01.b_54_241 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTG  50

seq1  TGTCTCACCACCACCACCACCCCAGTCAACCTGTATTCTCTTCTCTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACCACCACCACCACCCCAGTCAACCTGTATTCTCTTCTCTTCAC  100

seq1  TTTTTTTCCCTTTTTCTGGTCCTGGGGTTAAAGCCAGGGGCATTTACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCTTTTTCTGGTCCTGGGGTTAAAGCCAGGGGCATTTACATG  150

seq1  AGATCTGAGCTCTAGAGTCAAGTTTTTAATGTTCTCAT  188
      ||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGCTCTAGAGTCAAGTTTTTAATGTTCTCAT  188

seq1: chr8_86952211_86953295
seq2: B6Ng01-154M01.g_66_1133

seq1  GAATTCCTTGGCTTTTGCTCTGTGGGTAGAATGGATGACATGAGGCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCTTTTGCTCTGTGGGTAGAATGGATGACATGAGGCGGTG  50

seq1  AGCCAGCTGGGACCATGTCTCCTTCAGGAGGACTAAGGAGATGCCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGGGACCATGTCTCCTTCAGGAGGACTAAGGAGATGCCTAGCA  100

seq1  GCCAGAACACACAGATTACAGAATCACAAGGGGCCTGGGAAGCATTGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACACACAGATTACAGAATCACAAGGGGCCTGGGAAGCATTGCGG  150

seq1  CCTGATCCCTGTTGTGTCTCTGGTCCTACGCTCCAATTCTGCCCCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCCCTGTTGTGTCTCTGGTCCTACGCTCCAATTCTGCCCCTTCAT  200

seq1  TCCATACCATAGAGCCAGCTCATTTGCATAATGGTGCCCATTCCACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACCATAGAGCCAGCTCATTTGCATAATGGTGCCCATTCCACCTGT  250

seq1  GTCACTCCCTACACGTTTTCCATAGGTAGCTCCTCCCTAGGCCTCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCCTACACGTTTTCCATAGGTAGCTCCTCCCTAGGCCTCCTATT  300

seq1  CCAAGAGGCCCAGCTTCTTCACTTATTGAATAGCTAATGTAAGCATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGCCCAGCTTCTTCACTTATTGAATAGCTAATGTAAGCATGTGA  350

seq1  AATCTGTGGGCATTCTCGATGCACAAAGAACTTCCAGGATATTTTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGGCATTCTCGATGCACAAAGAACTTCCAGGATATTTTGATGT  400

seq1  ATCTCGTTCCATACTTTTCTATGGATACAGACTTGTGATTACAATTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTTCCATACTTTTCTATGGATACAGACTTGTGATTACAATTCCCT  450

seq1  GTCCTTCTTGGGACACATCATAGCACCATGTCTGGTCAGGCAGGTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTTGGGACACATCATAGCACCATGTCTGGTCAGGCAGGTTATAC  500

seq1  ACTGAATAGAGGTAGCAGATCACACATCAGAGGCATCACATAGCTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAGAGGTAGCAGATCACACATCAGAGGCATCACATAGCTGTATA  550

seq1  TTTGTTGATGGAATTTAAGAATCTTGCTCTGACAGATTGAGGATATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATGGAATTTAAGAATCTTGCTCTGACAGATTGAGGATATTATG  600

seq1  ACAGCTTTTGACGGATGGGCTTAACAACTCGAGAAAGGGGCGTCTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTTGACGGATGGGCTTAACAACTCGAGAAAGGGGCGTCTTGTTT  650

seq1  AAATTCTCACCGTGGTGCTGTATGCCTTGGCAGAAACCCCAGAAAAGAGT  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATTCTCACCGTGGTGCTGTATGCCTTGGCAG-AACCCCAGAAAAGAGT  699

seq1  TTTGGTAATATCTGGTGATATTCTGCTTGCTGGGGTTTGGGAGCCTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATATCTGGTGATATTCTGCTTGCTGGGGTTTGGGAGCCTCCTG  749

seq1  TCACTGCCTCTGAGGTCTGGCTGTTCTAAACAACACTGCAGGGAACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCTCTGAGGTCTGGCTGTTCTAAACAACACTGCAGGGAACATCT  799

seq1  TTGTGGTGAGGATCTGTCTGCGGTGCTGGTAAGTTCTCAATGGTCTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGAGGATCTGTCTGCGGTGCTGGTAAGTTCTCAATGGTCTTGCT  849

seq1  GTCTCCAGACCGAAGACCATTGTTACATTGTTACTACTGCCTTTGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGACCGAAGACCATTGTTACATTGTTACTACTGCCTTTGAATTT  899

seq1  GTGGGAGGGGCTCTGAGGCAAGCTGATTGGTGTATTCAAGATGTGGATGA  950
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  GTGGGAGGGGCTCTGA-GCAAGCTGATTGGTGTATTC-AGATGTGGATGA  947

seq1  CTCAGAGAAGGGGAAGGGCAACAAGGTGGTCCACAAGAAAAGCTACACGT  1000
      ||||||||  ||||  |||||||  ||||||||||   ||||||||||||
seq2  CTCAGAGA--GGGA--GGCAACA--GTGGTCCACA--GAAAGCTACACGT  989

seq1  TTGAAGTTGGGGTAATTTTATTTGCCAATGTCTGGAGACATTTTTTGTTG  1050
      ||| |||| |||||||||   |||||| ||||||||||||||||||||| 
seq2  TTG-AGTT-GGGTAATTT--ATTGCCATTGTCTGGAGACATTTTTTGTT-  1034

seq1  TCATTGATGTAGGTGGCAGGGTGGGATGCTGCTGT  1085
      ||||||||||| || ||| ||| ||||||||||||
seq2  TCATTGATGTA-GTTGCAAGGTTGGATGCTGCTGT  1068