BAC Information

Click to search

BAC

Clone NameB6Ng01-154M17
Chromosome8 (Build37)9 (Build37)
Map Location 127,332,065 - 127,332,56620,644,472 - 20,645,579
singlet/doubletsingletsinglet
Overlap geneTrim67
Upstream geneRab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444
Downstream gene2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M17.bB6Ng01-154M17.g
ACCDH949745DH949746
length9921,103
definitionDH949745|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M17, 5' end.DH949746|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,332,065 - 127,332,566)(20,644,472 - 20,645,579)
sequence
gaattccaggccagccttggctacctagtgagtttgaagccaacctgagt
tcttgtgacattgtctcaaaaccaaaataagggccagggacatgtcccct
ggggttagggagcacactgagcaatttaggtggcctgcatttgatccctg
agggatcctagagggaaggaggagagaagcagctgctacaagttatcctc
tgagctccagacctgcactggggcagcacattataaataaataataaata
agtaaataagtaaataaacaccctcagaaatcaaccaagatgacacgtgt
cgcctaaagatacaggatggtaataaacaaggactgtctatgtctcagct
ggtagaatactggccttgctggcacgagctctgggttccatcctcactct
catgagctgcagcatactctgtcacagatctgtggtcccagcacatgggc
gccagaggcaggaagattggggctcccaagctatccttggctatatagtg
attttttgtgtccaccctgggctacatgagcccttgtctcaaaattttca
taaatatgattaggtgtggtagtgcactcctttaattccagcccttggga
gccagtggcagatggatctctaggagtttgaaggcagcctggtctacata
gtaagttttaggacagctaggaataaaataaaataaaataaaaccaagca
ttaaatagggctgggccaatgcctctgtaggtaaaatggctgatccacga
gcaggacctgagtttgaagtggattcttgggactccccagaatccactta
aaaagcctggctggcagttcgtgatcgaaatcctcatgttggtaaagggt
ggagacaggaagattcctgggactcactagtcagccagcctagcagagtg
aattgatagatggagaaacagatcgacaaaccacaggaggtagtgataga
ctggctcaaagtttgactacttgggttcaggcctggtagagg
gaattccagtgcagctgaagaccagctgagacacccagtctcgtggactg
aacaactactggagtctcgaaccgtccattcataggcagtcatgttggat
tagctggaccatagcctgtaatgctaatcaaccccctttctatacagatt
catcctgtaagttctgttaccctagagaactaagacatctgtaatagtag
gtgacaagagatgacaaatgaccacaaaatgtgactctaggcacagacac
tagggagggcctcccactaggggcactgtggcatccatgcaggacctggg
tgaatttgtagcaattcatgtcctatctgtttagaaataagaagtcccca
aaccttaagagccaagaaaggctagtccatttttagatgcctatgaaaac
catagaggatctcctgtgctttcaacttgggaagctgagcatgggctggg
ctcattcctcctttgacaaagtgtcctcctgcagtgagcagtctgcacaa
ctgcatggcaaacttgtttcctgtattggttatttttataaccatttgac
agaagctagagtcttctgagaggagggaaccttaattgagaaaatgcctc
cataagatcagactgtaggcaagcctggagggcattttcttagtgattga
caggggagagcccagcccattgtgggtggtgttatctctgaggtgctggt
cctgagttctataagaaagcaggcagagcaagccatgaggagcaagccag
taagcagcacccctccatggcctctgcatcagctcttgcctcctggctcc
tgtcctgatttcctttgatgaacaacagtgatatggaagtgtgagccaaa
taaacctttcctctcctacttgctttttttgtcatggtgtttcatcacag
caataaaaaccttagatactcccaaagacaggccagtcaactgctccttt
ggtttcagtatatagtgtggggtgctcagtatatgtgggtagaggaagga
gctacatgcacacgtggaagccaaagtgccaagcatcttctattactctc
atcgattttgttgtatagttgactttatgagacaggcttgctgtctgctg
gct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127332065_127332566
seq2: B6Ng01-154M17.b_291_649 (reverse)

seq1  CTCCCAAGTGCTGGAATTAAAGGTGTGCACCACCACACCTGGCTGAGAGG  50
      |||||||| |||||||||||||| |||||| |||||||||          
seq2  CTCCCAAGGGCTGGAATTAAAGGAGTGCACTACCACACCT----------  40

seq1  TTGATTTTAAATAGTTGTTAGCTCTGGTCACTTAAGTGCCAAGAGGCTCA  100
               |||  |  |||      |  | ||  | | |||| ||||||
seq2  ---------AATCATATTTA-----TGAAAATTTTGAGACAAG-GGCTCA  75

seq1  TGT--CACAGTGTG--AACAAGAAATCAAGAACAGTAGCAAAACCAAGCA  146
      |||  | ||| |||   |||| ||||||  |    |||| ||    ||| 
seq2  TGTAGCCCAGGGTGGACACAAAAAATCACTA--TATAGCCAAGGATAGCT  123

seq1  GGGTGGTGCACGCCTTTAATCCAGCAATCTGTAGTCAGAGGCAGGCAGAT  196
       |  || || |             ||||||           |  ||    
seq2  TG--GGAGCCC-------------CAATCT----------TCCTGC----  144

seq1  CTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGCAGTTCCAGGACAGCCAG  246
      |||||    | | |   ||  || | ||||| | ||     |||||    
seq2  CTCTGGCGCCCATG--TGCTGGGACCACAGATCTGT-----GACAGAGTA  187

seq1  GGCTACCTAGAGAAACCCTGTCTCAACAAAACAAAAATAAATAAGTAAAT  296
       ||| |    ||         |||                || ||     
seq2  TGCTGC----AG---------CTC----------------ATGAG-----  203

seq1  AAGTAAGAATAATAGTAAGAAGAGGAAGGAGGAGGAGGAAAGAAAGAAAG  346
       ||| || ||             ||||    |||   |   |  || |||
seq2  -AGTGAGGAT-------------GGAACCCAGAGCTCG--TGCCAGCAAG  237

seq1  ATCCGCAGCATTCCACATACTACTGAAGATGCATAGAGCCAGTACTGGGG  396
           ||| |||| ||   |  ||| |||  ||||||  |||| || |  
seq2  ---GCCAGTATTCTAC---CAGCTG-AGA--CATAGA--CAGTCCTTGTT  276

seq1  TAAAACAAGAGAGGAGTGGTGGTGGGGGGGTCGGGGTTCAGTGGAGCAGG  446
      ||  || |    | | |  |  | || |   || |  |||          
seq2  TATTACCATCCTGTA-TCTT--TAGGCGACACGTG--TCA----------  311

seq1  TGGTGGTGGACTGTGAAGGATGGAGTTGTCTAGGCGGTGCTATTTACTTA  496
      |  |||| || |    ||| ||   || | ||        ||||||||||
seq2  TCTTGGTTGATTTCTGAGGGTG--TTTATTTA------CTTATTTACTTA  353

seq1  TTTATT  502
      ||||||
seq2  TTTATT  359

seq1: chr9_20644472_20645579
seq2: B6Ng01-154M17.g_66_1168

seq1  GAATTCCAGTGCAGCTGAAGACCAGCTGAGACACCCAGTCTCGTGGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCAGCTGAAGACCAGCTGAGACACCCAGTCTCGTGGACTG  50

seq1  AACAACTACTGGAGTCTCGAACCGTCCATTCATAGGCAGTCATGTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACTGGAGTCTCGAACCGTCCATTCATAGGCAGTCATGTTGGAT  100

seq1  TAGCTGGACCATAGCCTGTAATGCTAATCAACCCCCTTTCTATACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGACCATAGCCTGTAATGCTAATCAACCCCCTTTCTATACAGATT  150

seq1  CATCCTGTAAGTTCTGTTACCCTAGAGAACTAAGACATCTGTAATAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTAAGTTCTGTTACCCTAGAGAACTAAGACATCTGTAATAGTAG  200

seq1  GTGACAAGAGATGACAAATGACCACAAAATGTGACTCTAGGCACAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGAGATGACAAATGACCACAAAATGTGACTCTAGGCACAGACAC  250

seq1  TAGGGAGGGCCTCCCACTAGGGGCACTGTGGCATCCATGCAGGACCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGGCCTCCCACTAGGGGCACTGTGGCATCCATGCAGGACCTGGG  300

seq1  TGAATTTGTAGCAATTCATGTCCTATCTGTTTAGAAATAAGAAGTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGTAGCAATTCATGTCCTATCTGTTTAGAAATAAGAAGTCCCCA  350

seq1  AACCTTAAGAGCCAAGAAAGGCTAGTCCATTTTTAGATGCCTATGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAAGAGCCAAGAAAGGCTAGTCCATTTTTAGATGCCTATGAAAAC  400

seq1  CATAGAGGATCTCCTGTGCTTTCAACTTGGGAAGCTGAGCATGGGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGGATCTCCTGTGCTTTCAACTTGGGAAGCTGAGCATGGGCTGGG  450

seq1  CTCATTCCTCCTTTGACAAAGTGTCCTCCTGCAGTGAGCAGTCTGCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTCCTTTGACAAAGTGTCCTCCTGCAGTGAGCAGTCTGCACAA  500

seq1  CTGCATGGCAAACTTGTTTCCTGTATTGGTTATTTTTATAACCATTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGCAAACTTGTTTCCTGTATTGGTTATTTTTATAACCATTTGAC  550

seq1  AGAAGCTAGAGTCTTCTGAGAGGAGGGAACCTTAATTGAGAAAATGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGAGTCTTCTGAGAGGAGGGAACCTTAATTGAGAAAATGCCTC  600

seq1  CATAAGATCAGACTGTAGGCAAGCCTGGAGGGCATTTTCTTAGTGATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATCAGACTGTAGGCAAGCCTGGAGGGCATTTTCTTAGTGATTGA  650

seq1  CAGGGGAGAGCCCAGCCCATTGTGGGTGGTGTTATCTCTGAGGTGCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGAGCCCAGCCCATTGTGGGTGGTGTTATCTCTGAGGTGCTGGT  700

seq1  CCTGAGTTCTATAAGAAAGCAGGCAGAGCAAGCCATGAGGAGCAAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCTATAAGAAAGCAGGCAGAGCAAGCCATGAGGAGCAAGCCAG  750

seq1  TAAGCAGCACCCCTCCATGGCCTCTGCATCAGCTCTTGCCTCCTGGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCACCCCTCCATGGCCTCTGCATCAGCTCTTGCCTCCTGGCTCC  800

seq1  TGTCCTGATTTCCTTTGATGAACAACAGTGATATGGAAGTGTGAGCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGATTTCCTTTGATGAACAACAGTGATATGGAAGTGTGAGCCAAA  850

seq1  TAAACCTTTCCTCTCCTACTTGCTTTTTTTGTCATGGTGTTTCATCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTTCCTCTCCTACTTGCTTTTTTTGTCATGGTGTTTCATCACAG  900

seq1  CAATAAAAACCCTAAGATACTCCCAAAGACAGGCCAGTCAACTGCTCCTT  950
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAA-CCTTAGATACTCCCAAAGACAGGCCAGTCAACTGCTCCTT  949

seq1  TGGTTTTCAGTATATAGTGT-GTGTGCTCAGTATATGTGGGTAGAGGGAA  999
      ||| |||||||||||||||| | |||||||||||||||||||||| ||||
seq2  TGG-TTTCAGTATATAGTGTGGGGTGCTCAGTATATGTGGGTAGA-GGAA  997

seq1  GGAGCTACATGCACACGTGGAAGCCAGAGTGCCAAGCATCTTCTATTACT  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGCTACATGCACACGTGGAAGCCAAAGTGCCAAGCATCTTCTATTACT  1047

seq1  CTTCATCGTATTTTTGTTGTTATAGTTGACTTT-TGAGACAAGGTCTTGC  1098
      | ||||||   |||||||| ||||||||||||| |||||||  | |||||
seq2  C-TCATCG--ATTTTGTTG-TATAGTTGACTTTATGAGACA--GGCTTGC  1091

seq1  TGTC--CTGGCT  1108
      ||||  ||||||
seq2  TGTCTGCTGGCT  1103