BAC Information

Click to search

BAC

Clone NameB6Ng01-158I08
ChromosomeX (Build37)8 (Build37)
Map Location 99,328,840 - 99,329,08551,862,136 - 51,862,518
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSnx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4
Downstream geneLOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158I08.bB6Ng01-158I08.g
ACCDH952448DH952449
length879812
definitionDH952448|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I08, 5' end.DH952449|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,328,840 - 99,329,085)(51,862,136 - 51,862,518)
sequence
gaattcacaggagcaagggctccataatatccagcaaataccgtttcact
gaagatggccaccacctctggctcttacagtttttctgcctcatctgcca
tgattatccccgaggctctgggaggagggagtgtgatacagatgtgccac
atacagctggggactccatagtctcttattgtccgatgttgaggtgctat
gagtttctgcctattaccatctctgcagagagaagtttcgttgatgcagt
ttgagaaacacactgattcgtgcacagattgtgcttcacctgcaggatca
cacctgctgtaggaacacggagcagtgtggacagatgacagtgagcagtg
ttgaggtcacgagagcctttgggagagaaatggagctaggatgggaagtg
ttctggtagcacctcgtaggcttcttaaatcctggttagttttctttttc
ttttttttttaaattaggtattatcttcatttacatttacaatgctatcc
caaaagtccaccataccccactcccacttccctacccacccactcctact
tcttgaccctggcgttcccctgtactaagacatataaagaccagtgggca
gttgcaagaccagtgggcctctctttccactgatggctgactaggccatt
ttctgatacatatgcagctagacacatgagctccggggggtactagttag
ttcatacagaagtggatgctcacagtcagctattggatggatcacagggt
gcccaatgggggagctagagaaagtaccccaggagctaaagggatctgca
actctggttagttttgtggggtgagaaacttcattttctcatgtttgtgg
cttcaatcaatttaaagaaaattttctcc
gaattcacctgtgtctttcctatttttgttttctatttgcaagatatggc
catttctgatagaatagtgataaaatattaaacattaaaaccctccattt
tgagtcccaccatgtgtgctctttggttggtggtttagtccttaggagtt
gtgggggtactggctagctcatattgttgttcctcctgtgggactgcaaa
cccccccagctccttgggtcctttttccagctccttcactggggacccta
tggtcagtccaatggttggctgcgagcatccacctctgtatttgtgaggc
actggcagagcctctcaggagacagctttatcaggcttctgtcagcaggc
tcttgtcaacagtgtctgggtgtggtgattgtaaatggatgtatccccag
gtggggcagtctctagatggtcatttcttcagtctctgctctacactttg
tctctgtaactccatccatgggtgttttgtttcccccttctaagatggat
agaagtattcacacaatggtcttccttattcttgagtttcatgtggtttg
tgaattgtatcttgggtattccaagcttcttgactcctgggctaatatcc
acttatcggtgagtgcatatcatgtgtgttcttttgtgattgggttacct
cacacatggtgagactcatggctccagctgcatatgcagcagaagatggc
ctaatcggacatcaatgggaggagaggctctttgtcctatgaagactcta
tgccccagtgtggaggaataccagggccaggaagcaggagtgggtgggtt
ggtgagcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99328840_99329085
seq2: B6Ng01-158I08.b_501_751 (reverse)

seq1  TATGAACTAACCAGTA-CCCCCGGAGCTCGTGTCTCTAGCTGTATATGTA  49
      ||||||||||| |||| |||||||||||| ||| |||||||| |||||||
seq2  TATGAACTAACTAGTACCCCCCGGAGCTCATGTGTCTAGCTGCATATGTA  50

seq1  GCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGACT  99
       ||||| ||||||||||| |||||||||||||||||||||||| ||| ||
seq2  TCAGAAAATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCACTGGTCT  100

seq1  AGCAA-----------ACTTTATATGCCTCAGTACAGGGGAACGCCAGGG  138
       ||||            ||||||||| || ||||||||||||||||||||
seq2  TGCAACTGCCCACTGGTCTTTATATGTCTTAGTACAGGGGAACGCCAGGG  150

seq1  CCAAGAAGTGGGAGTGGGTGAGTAGGGGAGTGGGGGAGGAGGGTATGGGG  188
       |||||||| |||||||||| |||||| |||  |||||  |||||||| |
seq2  TCAAGAAGTAGGAGTGGGTGGGTAGGGAAGT--GGGAGTGGGGTATGGTG  198

seq1  GACTTTTGGGATAGCATTGGAAATGTAAGTGAAGAAAATACCTAATAAAT  238
      ||||||||||||||||||| |||||||| |||||| |||||||||     
seq2  GACTTTTGGGATAGCATTGTAAATGTAAATGAAGATAATACCTAA-----  243

seq1  TTTAAAAA  246
      ||||||||
seq2  TTTAAAAA  251

seq1: chr8_51862136_51862518
seq2: B6Ng01-158I08.g_354_880 (reverse)

seq1  CCCCTGCTCACCAACCCACCCACTCCTGCTTCCTGGCC-------TGCAA  43
      ||||||||||||||||||||||||||||||||||||||       | |  
seq2  CCCCTGCTCACCAACCCACCCACTCCTGCTTCCTGGCCCTGGTATTCCTC  50

seq1  CCCAC------------------------------CCACTCCTGC--TTC  61
      | |||                              || ||||| |  || 
seq2  CACACTGGGGCATAGAGTCTTCATAGGACAAAGAGCCTCTCCTCCCATTG  100

seq1  CTGGCC-----TGCAACATTTT------AATACAGTT-----------TC  89
       || ||      || |  || |       || ||| |           ||
seq2  ATGTCCGATTAGGCCATCTTCTGCTGCATATGCAGCTGGAGCCATGAGTC  150

seq1  TCATGCTGTG-GAG--ACACCAAGCCATAAAG-----TTATTTTGTGTCT  131
      |||   |||| |||  |  |||| |   ||||       ||  | ||   
seq2  TCACCATGTGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCAC  200

seq1  TCTTCATAGCTATAATCTGCTACT-GCTCTGAAACTCAA------TGTGG  174
      ||     | | ||||   | || | || | |  | ||||      ||   
seq2  TC-----ACCGATAAGTGGATATTAGCCCAG-GAGTCAAGAAGCTTGGAA  244

seq1  TATGCAGGATA----TC----------TGATA-TATAGAA-----ATGTC  204
      ||  || ||||    ||          ||| | |  ||||     | | |
seq2  TACCCAAGATACAATTCACAAACCACATGAAACTCAAGAATAAGGAAGAC  294

seq1  ATTTG-------ACTCC------------AAGGGGG--TCATGTCCCACA  233
        |||       ||| |            |||||||   ||   | | ||
seq2  CATTGTGTGAATACTTCTATCCATCTTAGAAGGGGGAAACAAAACACCCA  344

seq1  -GGTTG-------AGAAACACTGCTCT----CAGATAACTGTAG-CATAA  270
       || ||       ||| |||  | | |    ||||  |||| ||  || |
seq2  TGGATGGAGTTACAGAGACAAAG-TGTAGAGCAGA-GACTGAAGAAATGA  392

seq1  C--TCT-GATTCTG--------------------ATTTATA--------A  289
      |  ||| ||  |||                    ||||| |        |
seq2  CCATCTAGAGACTGCCCCACCTGGGGATACATCCATTTACAATCACCACA  442

seq1  CCCAGACACTACTGTGGATGCCAAGAATTGCATGCTGACAGGAGCCTGAT  339
      ||||||||||      | || |||||   || ||||||||| ||||||||
seq2  CCCAGACACT------GTTGACAAGA---GCCTGCTGACAGAAGCCTGAT  483

seq1  ACAACTGTCTCCTGAGAGGCTTTACCAGTGCCTGACAAATACCG  383
      | | ||||||||||||||||| | ||||||||| |||||||| |
seq2  AAAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTCACAAATACAG  527