BAC Information

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BAC

Clone NameB6Ng01-158N12
Chromosome8 (Build37)10 (Build37)
Map Location 99,156,112 - 99,157,25978,188,567 - 78,188,628
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158N12.bB6Ng01-158N12.g
ACCDH952681DH952682
length1,137584
definitionDH952681|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N12, 5' end.DH952682|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,156,112 - 99,157,259)(78,188,567 - 78,188,628)
sequence
gaattctaaataaatctcttgattcagtgagtactggcttcagattcatg
acctataaggaaaagcacaattaaaatattgttcaatcacaaagagacag
ggatcaatgttgagcttttactgttggaaattaatgtaaacttcaggaaa
tacttagaaaagacgtgtccctactaataattttgctctatagataaaat
tttgctctatcctagaatcattgaattaataaaactaaatttaccaactc
atggattaaagtgcatactttattagtataaattgtaaggcaaagaaata
aattattctaaatataagcttattttactttattgtatatattggttagt
ttatccaccgcagaaggtaaatttctgaataggaaacctatttgtattga
cagaacacagagtagagtcataacaatgtgtttccttgacatatgaggag
aatgaaaactacctttataaattgttgagctaacatacatacttgtacaa
tagttgaccaagttaatcaatatatagcaataataaataagataatttat
gttcacatatgttagtggtatatacaacttttcccttcttttgtagcatg
tgcctacaaataaaatttatgttgaccaacattgccattctgactaattt
cccagttgaaattagttatagtatattactcaaatgaatcattattatta
tgaatgaacttctacagcatatttgacaccaccctaagtgctttgaaaat
tattttttcaaactgtcctgcaagccattacatacagcagacaatattgc
catatcatttttctggatgaagtgattttatccaagcaagtgagaaatag
aactgaaaattttaaccttgttcctattgttaacttctttatcttggcct
tttgattgtgatatgtgattacctatttttctttctcttctaccaaatgc
aagctttatggctatactctatttctgtgatatctgttatattgcacatg
tagcatagaactgatatcatgtcattatgttaacagtattgtctgatgat
gagtgagtatttgatttctcagtcacatctgtggagctgtacatgagtga
tccttctatgaggcagagcaatcgcattttcaatggg
gaattctctgtttagttatataccccatttttaaattgtgttatttggat
tgttggtgtctaatttcttaagttctgtatatattttgcatattagtcat
ctgtcagatgtagagtagatgaagatcttttctcaatttgtaggctgtca
tttcatcctaatgacaatgtccttggacttacagaagctgttcagtttca
taaagtcccatttattaaattttgaacttagtgcttgagccattggtgtt
cttttcaggaacttgtctcctgtacttataagtttacggctattccccgc
tctctgttttattagatttagtgtatctggttttacattgaggtctttga
tccattcagacttgagttttgtgtaggatgataagcatgaatctatttcc
attccattacatacagaaatatggttagacaagcaccatttgttgaagac
gctctccctttcccactgtatggttttggcttctttgtcaaaaatcaagc
atccttaggggtgtggggtgtttgtttgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgcgtgtgtgcgtattcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99156112_99157259
seq2: B6Ng01-158N12.b_49_1185

seq1  GAATTCTAAATAAATCTCTTGATTCAGTGAGTACTGGCTTCAGATTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATAAATCTCTTGATTCAGTGAGTACTGGCTTCAGATTCATG  50

seq1  ACCTATAAGGAAAAGCACAATTAAAATATTGTTCAATCACAAAGAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAAGGAAAAGCACAATTAAAATATTGTTCAATCACAAAGAGACAG  100

seq1  GGATCAATGTTGAGCTTTTACTGTTGGAAATTAATGTAAACTTCAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATGTTGAGCTTTTACTGTTGGAAATTAATGTAAACTTCAGGAAA  150

seq1  TACTTAGAAAAGACGTGTCCCTACTAATAATTTTGCTCTATAGATAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAAAAGACGTGTCCCTACTAATAATTTTGCTCTATAGATAAAAT  200

seq1  TTTGCTCTATCCTAGAATCATTGAATTAATAAAACTAAATTTACCAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTATCCTAGAATCATTGAATTAATAAAACTAAATTTACCAACTC  250

seq1  ATGGATTAAAGTGCATACTTTATTAGTATAAATTGTAAGGCAAAGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTAAAGTGCATACTTTATTAGTATAAATTGTAAGGCAAAGAAATA  300

seq1  AATTATTCTAAATATAAGCTTATTTTACTTTATTGTATATATTGGTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTAAATATAAGCTTATTTTACTTTATTGTATATATTGGTTAGT  350

seq1  TTATCCACCGCAGAAGGTAAATTTCTGAATAGGAAACCTATTTGTATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACCGCAGAAGGTAAATTTCTGAATAGGAAACCTATTTGTATTGA  400

seq1  CAGAACACAGAGTAGAGTCATAACAATGTGTTTCCTTGACATATGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACAGAGTAGAGTCATAACAATGTGTTTCCTTGACATATGAGGAG  450

seq1  AATGAAAACTACCTTTATAAATTGTTGAGCTAACATACATACTTGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACTACCTTTATAAATTGTTGAGCTAACATACATACTTGTACAA  500

seq1  TAGTTGACCAAGTTAATCAATATATAGCAATAATAAATAAGATAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACCAAGTTAATCAATATATAGCAATAATAAATAAGATAATTTAT  550

seq1  GTTCACATATGTTAGTGGTATATACAACTTTTCCCTTCTTTTGTAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATATGTTAGTGGTATATACAACTTTTCCCTTCTTTTGTAGCATG  600

seq1  TGCCTACAAATAAAATTTATGTTGACCAACATTGCCATTCTGACTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACAAATAAAATTTATGTTGACCAACATTGCCATTCTGACTAATTT  650

seq1  CCCAGTTGAAATTAGTTATAGTATATTACTCAAATGAATCATTATTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGAAATTAGTTATAGTATATTACTCAAATGAATCATTATTATTA  700

seq1  TGAATGAACTTCTACAGCATATTTGACACCACCCTAAGTGCTTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACTTCTACAGCATATTTGACACCACCCTAAGTGCTTTGAAAAT  750

seq1  TATTTTTTCAAACTGTCCTGCAAGCCATTACATACAGCAGACAATATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAAACTGTCCTGCAAGCCATTACATACAGCAGACAATATTGC  800

seq1  CATATCATTTTTCTGGATGAAGTGATTTTATCCAAGCAAGTGAGAAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATTTTTCTGGATGAAGTGATTTTATCCAAGCAAGTGAGAAATAG  850

seq1  AACTGAAAATTTTAACCTTGTTCCTATTGTTAACTTCTTTATCTTGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATTTTAACCTTGTTCCTATTGTTAACTTCTTTATCTTGGCCT  900

seq1  TTTGATTGTGATATGTGATTACCTATTTTTCTTTCTCTTCTACCAAATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGTGATATGTGATTACCTATTTTTCTTTCTCTTCTACCAAATGC  950

seq1  AAGCTTTATGGCTATACTCTATTTCTGTGATTAATCTGTTATATTGCCAA  1000
      |||||||||||||||||||||||||||||||  ||||||||||||||  |
seq2  AAGCTTTATGGCTATACTCTATTTCTGTGAT--ATCTGTTATATTGC--A  996

seq1  CATGTAGCATAGAACTTGATATTCAATGTCATTATGTTAACAGTATTGTC  1050
      ||||||||||||||| ||||||   |||||||||||||||||||||||||
seq2  CATGTAGCATAGAAC-TGATAT--CATGTCATTATGTTAACAGTATTGTC  1043

seq1  TGAATGAATGAGTGAGTATTTGATTTCTCAGTCACATCTGTGGAAGCTGT  1100
      || ||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TG-ATG-ATGAGTGAGTATTTGATTTCTCAGTCACATCTGTGG-AGCTGT  1090

seq1  ACATGAGTGAACCCTTCTATGAGGCAGA-CAATCGCATTTTACAATGGG  1148
      ||||||||| | |||||||||||||||| |||||||||||| |||||||
seq2  ACATGAGTG-ATCCTTCTATGAGGCAGAGCAATCGCATTTT-CAATGGG  1137

seq1: chr10_78188567_78188628
seq2: B6Ng01-158N12.g_592_652 (reverse)

seq1  CACATGAATTTAGTGTACACACACACACACACACACACACACACACACAC  50
      |||||||| |  |   |||| |||||||||||||||||||||||||||||
seq2  CACATGAA-TACGCACACACGCACACACACACACACACACACACACACAC  49

seq1  ACACACACAAAC  62
      ||||||||||||
seq2  ACACACACAAAC  61