BAC Information

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BAC

Clone NameB6Ng01-160G20
Chromosome8 (Build37)
Map Location 38,499,075 - 38,628,901
singlet/doubletdoublet
Overlap geneLOC621149, Sgcz
Upstream gene6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G20.bB6Ng01-160G20.g
ACCDH953803DH953804
length8971,100
definitionDH953803|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G20, 5' end.DH953804|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,499,075 - 38,499,799)(38,627,776 - 38,628,901)
sequence
gaattctgtttgtgtgggtatcttcttttgggtttcttgatagaatacta
ctgtcttgcttttcctagggtgtagtttccttccttgtgttggagttttc
catctattatcctttgtaggactgaatttatggaaagatattgtgatggt
gttgcttgcatctatgacttctgatctctttccatggttttctttttttt
aattttaatgcttttccccccttttataaaaattaagtattttcctcatt
tacatttccaatgctaccctccatacccaccccccctactcccctaccca
ccactccccctttttggccctggtgttcccctgtaatggggcatataaag
tttgcaagtccaatgggcctctctttccagtgatggccaactaggccatc
ttttgatacatatgcagctagagacaagagctccggggtactggttagtt
catattgttgttccacctatagggttgcagttccctttagttccttgggt
gctttctctagctcctccattgggggccctgtgattcattcaatagctga
ctgtgagcatccacttctgtgtttgctaggccccggaatagtctcacaag
agacagctatatctgggtcctttcagaaaaaatcttgctagtttatgcaa
tggtgtcagcgtttggaagctgattatgggatgggatccctgaatatggc
aatcactagatggtccatccttttgtcacagctccaaattttgtctctgt
aactccttccatgggtgtttgttccaatttctaagaaggggcaaagtgtc
cacacttggtctttggttcttcttgagtttcatgcgttttagaaattgta
tcttaatatcttgggttatcctaagtatctgggctaatatccactta
gaattcaaatgactcctactctctgaaataacattcataaaaccaagatg
atgaccaaagagagtaagtcttcaatgtttgtcttgatattgttattaaa
ttccgtaagaacagttatttatttaaaaaatagaaggtatattattttga
ctgattatcactttctgttcttgttttcatgtgctgcaaaaaaaaatctt
aatgaaagttgaaaacttcactgtttttgagcataaggacaaatgttcat
agattattgttaggaattatgctgatttagtaaattagtggatggagatt
cacctttaattaacatgtattcactagcacaccaattgcttcttcagtgc
caaatggtaggtaccaattaatttaaaaaaacaaggagttccttaatttg
aagaaaagtagaaaggggctcatgggagtgtttggagagaggaagcaaat
ggagaaatattttaattaagttataatctcaaaacttaaaaaaaatcttt
tcaaaagatacaatattttaaagatataattcatgcttctcttggttagc
catcccaagagaggagtattaattttgttctatttaacatatgcctagtt
gagcatttttaatttctagaactctatataataccagaatataggaaaaa
acatatactcgattttcaacataaatgttttttatagtttaaatataatt
acattattttctcctgtcttcttcacaaagcccctcccttgtgccataac
tacactctttttctatcccataatgtgtttaatgttattttgatactatg
accttaacaacattgtcatttcctcagcccatggctagttgtggaaggaa
aactcagctaggactgaggaggggacaaagaggatggaaagagggagaga
tgaaaaatcacagctagcatttgcctactatgtgtcttcttgagtaaaaa
gaatactgattaggaagatatgcagagggtagacatgactcccggagtga
gacgggcacccaccatctcaaggttaatccagattgcctctgtctaagga
ttaggacaagagtggacaaggctgtaaaaaggccatccagactgccccac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38499075_38499799
seq2: B6Ng01-160G20.b_44_770

seq1  GAATTCTGTTTGTGTGGGTATCTTCTTTTGGGTTTCTTGATAGAATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGTGTGGGTATCTTCTTTTGGGTTTCTTGATAGAATACTA  50

seq1  CTGTCTTGCTTTTCCTAGGGTGTAGTTTCCTTCCTTGTGTTGGAGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGCTTTTCCTAGGGTGTAGTTTCCTTCCTTGTGTTGGAGTTTTC  100

seq1  CATCTATTATCCTTTGTAGGACTGAATTTATGGAAAGATATTGTGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTATCCTTTGTAGGACTGAATTTATGGAAAGATATTGTGATGGT  150

seq1  GTTGCTTGCATCTATGACTTCTGATCTCTTTCCATGGTTTTCTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGCATCTATGACTTCTGATCTCTTTCCATGGTTTTCTTTTTTTT  200

seq1  AATTTTAATGCTTTTCCCCCCTTTTATAAAAATTAAGTATTTTCCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGCTTTTCCCCCCTTTTATAAAAATTAAGTATTTTCCTCATT  250

seq1  TACATTTCCAATGCTACCCTCCATACCCACCCCCCCTACTCCCCTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAATGCTACCCTCCATACCCACCCCCCCTACTCCCCTACCCA  300

seq1  CCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTAATGGGGCATATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTAATGGGGCATATAAAG  350

seq1  TTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATC  400

seq1  TTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTT  450

seq1  CATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGT  500

seq1  GCTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATTCATTCAATAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATTCATTCAATAGCTGA  550

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGAATAGTCTCACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGAATAGTCTCACAAG  600

seq1  AGACAGCTATATCTGGGTCCTTTCAG-AAAAATCTTGCTAGTTTATGCAA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACAGCTATATCTGGGTCCTTTCAGAAAAAATCTTGCTAGTTTATGCAA  650

seq1  TGGTGTCAGCGTTTGGAAGCTGATTATGGGAT-GGATCCCTGAATATGGC  698
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGGATCCCTGAATATGGC  700

seq1  AATCACTAGATGGTCCATCCTTTTGTC  725
      |||||||||||||||||||||||||||
seq2  AATCACTAGATGGTCCATCCTTTTGTC  727

seq1: chr8_38627776_38628901
seq2: B6Ng01-160G20.g_67_1166 (reverse)

seq1  GTGGGGCAGTCTCTGGATGGCCTTTTCTTCAGCCTCTGCTCCACTCTTTG  50
      |||||||||  ||||||||||||||| | |||||| || ||||||| |||
seq2  GTGGGGCAG--TCTGGATGGCCTTTT-TACAGCCT-TG-TCCACTC-TTG  44

seq1  TCCCTGTATCTCCTTTAGACAGGAGCAATTCTGGATTTAAACTTTGGAGA  100
      |||   ||  ||| ||||||||  |||| ||||||||  ||| || ||||
seq2  TCC---TA-ATCC-TTAGACAGAGGCAA-TCTGGATT--AACCTT-GAGA  85

seq1  TGGGTGAGTGGCCCCGTTCCTCAACTCGGGAGTCATGTCTAACCTCTGCA  150
      | |||| |||  |||||  ||||   ||||||||||||||| ||||||||
seq2  T-GGTGGGTG--CCCGT--CTCACTCCGGGAGTCATGTCTACCCTCTGCA  130

seq1  TATCTTCCTATTCAGTATTCTTTTTTACTTCAAG-AGACACATAGTAGGC  199
      |||||||||| ||||||||| ||||||| ||||| |||||||||||||||
seq2  TATCTTCCTAATCAGTATTC-TTTTTAC-TCAAGAAGACACATAGTAGGC  178

seq1  AAATGCTAGCTTGTGATTTTTCATCTCTTCCCTCTTTCCATCCTCTTTTG  249
      |||||||||| |||||||||||||||| ||||||||||||||||||||  
seq2  AAATGCTAGC-TGTGATTTTTCATCTC-TCCCTCTTTCCATCCTCTTT--  224

seq1  GTCCCCTTCCTCAGTCCTAGCTGAGTTTTCCTTCCACAACTAGCCATGGG  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCC-TCCTCAGTCCTAGCTGAGTTTTCCTTCCACAACTAGCCATGGG  273

seq1  CTGGAGGAAATGAC-ATGTTGTTAAGGTCATAGTATCAAAATAACATTAA  348
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CT-GAGGAAATGACAATGTTGTTAAGGTCATAGTATCAAAATAACATTAA  322

seq1  ACACATTATGGGATAGAAAAAGAGTGTAGTTATGGCACAAGGGAGGGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATGGGATAGAAAAAGAGTGTAGTTATGGCACAAGGGAGGGGCT  372

seq1  TTGTGAAGAAGACAGGAGAAAATAATGTAATTATATTTAAACTATAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGAAGACAGGAGAAAATAATGTAATTATATTTAAACTATAAAAA  422

seq1  ACATTTATGTTGAAAATCGAGTATATGTTTTTTCCTATATTCTGGTATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATGTTGAAAATCGAGTATATGTTTTTTCCTATATTCTGGTATTA  472

seq1  TATAGAGTTCTAGAAATTAAAAATGCTCAACTAGGCATATGTTAAATAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTTCTAGAAATTAAAAATGCTCAACTAGGCATATGTTAAATAGA  522

seq1  ACAAAATTAATACTCCTCTCTTGGGATGGCTAACCAAGAGAAGCATGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAATACTCCTCTCTTGGGATGGCTAACCAAGAGAAGCATGAAT  572

seq1  TATATCTTTAAAATATTGTATCTTTTGAAAAGATTTTTTTTAAGTTTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTAAAATATTGTATCTTTTGAAAAGATTTTTTTTAAGTTTTGA  622

seq1  GATTATAACTTAATTAAAATATTTCTCCATTTGCTTCCTCTCTCCAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAACTTAATTAAAATATTTCTCCATTTGCTTCCTCTCTCCAAACA  672

seq1  CTCCCATGAGCCCCTTTCTACTTTTCTTCAAATTAAGGAACTCCTTGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGAGCCCCTTTCTACTTTTCTTCAAATTAAGGAACTCCTTGTTT  722

seq1  TTTTAAATTAATTGGTACCTACCATTTGGCACTGAAGAAGCAATTGGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTAATTGGTACCTACCATTTGGCACTGAAGAAGCAATTGGTGT  772

seq1  GCTAGTGAATACATGTTAATTAAAGGTGAATCTCCATCCACTAATTTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGAATACATGTTAATTAAAGGTGAATCTCCATCCACTAATTTACT  822

seq1  AAATCAGCATAATTCCTAACAATAATCTATGAACATTTGTCCTTATGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCATAATTCCTAACAATAATCTATGAACATTTGTCCTTATGCTC  872

seq1  AAAAACAGTGAAGTTTTCAACTTTCATTAAGATTTTTTTTTGCAGCACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTGAAGTTTTCAACTTTCATTAAGATTTTTTTTTGCAGCACAT  922

seq1  GAAAACAAGAACAGAAAGTGATAATCAGTCAAAATAATATACCTTCTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGAACAGAAAGTGATAATCAGTCAAAATAATATACCTTCTATT  972

seq1  TTTTAAATAAATAACTGTTCTTACGGAATTTAATAACAATATCAAGACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAATAACTGTTCTTACGGAATTTAATAACAATATCAAGACAA  1022

seq1  ACATTGAAGACTTACTCTCTTTGGTCATCATCTTGGTTTTATGAATGTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAGACTTACTCTCTTTGGTCATCATCTTGGTTTTATGAATGTTA  1072

seq1  TTTCAGAGAGTAGGAGTCATTTGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  TTTCAGAGAGTAGGAGTCATTTGAATTC  1100