BAC Information

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BAC

Clone NameB6Ng01-161D04
Chromosome8 (Build37)
Map Location 59,808,463 - 59,939,966
singlet/doubletdoublet
Overlap geneScrg1
Upstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
Downstream geneSap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161D04.bB6Ng01-161D04.g
ACCDH954381DH954382
length9781,092
definitionDH954381|Mus musculus domesticus DNA, BAC clone: B6Ng01-161D04, 5' end.DH954382|Mus musculus domesticus DNA, BAC clone: B6Ng01-161D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,938,988 - 59,939,966)(59,808,463 - 59,809,565)
sequence
gaattcatctggaattcttggttcttcccatagtaactgttataaaggaa
acactcaagatatttgttaagttaagcaagataaactaacttgcttctct
tttcctttctttgatacaattatacattatattataaaattatttagtgt
cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcagtt
ggggaggaaagggtttattcggcttacatttccatactgctgttcatcac
caaaggatgcaagactggaactcaggtcagaaatcaggagctgatgcaga
agtcatggaggaatgttctttactggcttgccttccctggcttgctcagc
ctgctctcttatagaaccaagactaccagcccagggatggttccatccac
aaggggcccttcccccttgatcactcattgagaaaatgccttacagttgg
atctcatggaggcatttcctcaactgaagctcctttctctgtgataactc
tagcctgtgtcaagttgtcacacaaaaccagccagtacatatagtaaatg
tattttatataaaataattttatacatatattataaatagtatttatata
taacaatataatatattttaaagcaaatatataatttttaggctgaggag
atgcctcggcaggtaagagctactgagttaaagagctgtcttatagtttt
gagtcagttgggaataatcaacatgaactatatatctaatacatagttta
tattattcaacacagacagcccacagttagggatgtctattttactttaa
gaaaatgtcctagacatcatgcaactttcattaggtgagatgggattatt
ttctaatcaaaaaataaatgaccaaaattaatagcatgagctaggtatgg
ttagttcacatctctattctcagccctctcactaggtttctgtcaaaggt
ttgggtgcagtggagggtgtgtgggcga
gaattcttaaaacttctgcagaaaattctagaaacactgcctgaggccac
accaaccaccacaattggtacagaattttaggaatgtttttcttgagcca
ccaaaactactgtcttatgtgggtaagggtgacactatcaaatatgaaga
aagaataggccaaggcctccatttttaaagtctatacccttcaagagaga
attggacatatccctgatcaatttaccttgatcaaagatagatgccttgc
agcagcctggggtttattttctcatgtaccaaacagggcaaactgcctgt
tcagtcagaggctacactgtattgagagataaagaaggtggcctttcttt
gagggaatagacaaataatgtcaaattccatgtaagggaaccgagaatat
taaaacaagcccgggaatcaagaattcccaagagttcttcacaaccaccc
gaagcaagtctacggaacaaactcctcctgccttcttgtgatctagacta
ggaaggggccattccctctaagtcagagaaaaatgtcaccctgagtgtcc
catttccattcatttctatcctctgcaaatggggaaaacaatcaagtgta
tggtctgaagagctgatccttggtgatgtcaggactctggcctggctgag
aagcaaaggaaataaaagcagggagcctggttggttggtttgtttgtttg
ttttgttttgtttaatagtgtttgccaggtgggttcttcatggtctgcct
taatgttggaatctggttagctcagacaatcaatttctcaaccaggtcac
tcaaaaccacaaagatccacactatgctgacctacagtattttcttgctc
cggtagaaattatatgagagtggagttcaatttagatggtccactggcca
gggattctccctggtatgtccccaaccaaagagctagattcgtaggaagc
tgagcctttctgatatgatcatggagtagtagacaatcctagcttcacta
tgcctcagttgcttttctgagtagtttggttcaaagtgtgtctgacggac
ctgggtagaaggacatgaattaccgaaaactctctatttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59938988_59939966
seq2: B6Ng01-161D04.b_45_1022 (reverse)

seq1  TCGCCCACACACCCCTCCACCTGCACCCAAACCTTTGACAGAAACCTAGT  50
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TCGCCCACACA-CCCTCCA-CTGCACCCAAACCTTTGACAGAAACCTAGT  48

seq1  GAGAGGGCTGAGAATAGAGATGTGAACTAACCATACCTAGCTCATGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCTGAGAATAGAGATGTGAACTAACCATACCTAGCTCATGCTAT  98

seq1  TAATTTTGGTCATTTA-TTTTTGATTAGAAAATAATCCCATCTCACCTAA  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATTTTGGTCATTTATTTTTTGATTAGAAAATAATCCCATCTCACCTAA  148

seq1  TGAAAGTTGCATGATGTCTAGGACATTTTCTTAAAGTAAAATAGACATCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTGCATGATGTCTAGGACATTTTCTTAAAGTAAAATAGACATCC  198

seq1  CTAACTGTGGGCTGTCTGTGTTGAATAATATAAACTATGTATTAGATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTGGGCTGTCTGTGTTGAATAATATAAACTATGTATTAGATATA  248

seq1  TAGTTCATGTTGATTATTCCCAACTGACTCAAAACTATAAGACAGCTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATGTTGATTATTCCCAACTGACTCAAAACTATAAGACAGCTCTT  298

seq1  TAACTCAGTAGCTCTTACCTGCCGAGGCATCTCCTCAGCCTAAAAATTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGTAGCTCTTACCTGCCGAGGCATCTCCTCAGCCTAAAAATTAT  348

seq1  ATATTTGCTTTAAAATATATTATATTGTTATATATAAATACTATTTATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTTTAAAATATATTATATTGTTATATATAAATACTATTTATAA  398

seq1  TATATGTATAAAATTATTTTATATAAAATACATTTACTATATGTACTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATAAAATTATTTTATATAAAATACATTTACTATATGTACTGGC  448

seq1  TGGTTTTGTGTGACAACTTGACACAGGCTAGAGTTATCACAGAGAAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTGTGACAACTTGACACAGGCTAGAGTTATCACAGAGAAAGGA  498

seq1  GCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCT  548

seq1  CAATGAGTGATCAAGGGGGAAGGGCCCCTTGTGGATGGAACCATCCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTGATCAAGGGGGAAGGGCCCCTTGTGGATGGAACCATCCCTGG  598

seq1  GCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGAAGG  648

seq1  CAAGCCAGTAAAGAACATTCCTCCATGACTTCTGCATCAGCTCCTGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGTAAAGAACATTCCTCCATGACTTCTGCATCAGCTCCTGATTT  698

seq1  CTGACCTGAGTTCCAGTCTTGCATCCTTTGGTGATGAACAGCAGTATGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGAGTTCCAGTCTTGCATCCTTTGGTGATGAACAGCAGTATGGA  748

seq1  AATGTAAGCCGAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGCCGAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGAT  798

seq1  GTTTGTGCAGGAATAGAAACCCTGACTAAGACACTAAATAATTTTATAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCAGGAATAGAAACCCTGACTAAGACACTAAATAATTTTATAAT  848

seq1  ATAATGTATAATTGTATCAAAGAAAGGAAAAGAGAAGCAAGTTAGTTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATAATTGTATCAAAGAAAGGAAAAGAGAAGCAAGTTAGTTTAT  898

seq1  CTTGCTTAACTTAACAAATATCTTGAGTGTTTCCTTTATAACAGTTACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAACTTAACAAATATCTTGAGTGTTTCCTTTATAACAGTTACTA  948

seq1  TGGGAAGAACCAAGAATTCCAGATGAATTC  979
      ||||||||||||||||||||||||||||||
seq2  TGGGAAGAACCAAGAATTCCAGATGAATTC  978

seq1: chr8_59808463_59809565
seq2: B6Ng01-161D04.g_64_1155

seq1  GAATTCTTAAAACTTCTGCAGAAAATTCTAGAAACACTGCCTGAGGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAACTTCTGCAGAAAATTCTAGAAACACTGCCTGAGGCCAC  50

seq1  ACCAACCACCACAATTGGTACAGAATTTTAGGAATGTTTTTCTTGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACCACAATTGGTACAGAATTTTAGGAATGTTTTTCTTGAGCCA  100

seq1  CCAAAACTACTGTCTTATGTGGGTAAGGGTGACACTATCAAATATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTACTGTCTTATGTGGGTAAGGGTGACACTATCAAATATGAAGA  150

seq1  AAGAATAGGCCAAGGCCTCCATTTTTAAAGTCTATACCCTTCAAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGGCCAAGGCCTCCATTTTTAAAGTCTATACCCTTCAAGAGAGA  200

seq1  ATTGGACATATCCCTGATCAATTTACCTTGATCAAAGATAGATGCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATATCCCTGATCAATTTACCTTGATCAAAGATAGATGCCTTGC  250

seq1  AGCAGCCTGGGGTTTATTTTCTCATGTACCAAACAGGGCAAACTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGGGGTTTATTTTCTCATGTACCAAACAGGGCAAACTGCCTGT  300

seq1  TCAGTCAGAGGCTACACTGTATTGAGAGATAAAGAAGGTGGCCTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAGGCTACACTGTATTGAGAGATAAAGAAGGTGGCCTTTCTTT  350

seq1  GAGGGAATAGACAAATAATGTCAAATTCCATGTAAGGGAACCGAGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATAGACAAATAATGTCAAATTCCATGTAAGGGAACCGAGAATAT  400

seq1  TAAAACAAGCCCGGGAATCAAGAATTCCCAAGAGTTCTTCACAACCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGCCCGGGAATCAAGAATTCCCAAGAGTTCTTCACAACCACCC  450

seq1  GAAGCAAGTCTACGGAACAAACTCCTCCTGCCTTCTTGTGATCTAGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTCTACGGAACAAACTCCTCCTGCCTTCTTGTGATCTAGACTA  500

seq1  GGAAGGGGCCATTCCCTCTAAGTCAGAGAAAAATGTCACCCTGAGTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGCCATTCCCTCTAAGTCAGAGAAAAATGTCACCCTGAGTGTCC  550

seq1  CATTTCCATTCATTTCTATCCTCTGCAAATGGGGAAAACAATCAAGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTCATTTCTATCCTCTGCAAATGGGGAAAACAATCAAGTGTA  600

seq1  TGGTCTGAAGAGCTGATCCTTGGTGATGTCAGGACTCTGGCCTGGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAAGAGCTGATCCTTGGTGATGTCAGGACTCTGGCCTGGCTGAG  650

seq1  AAGCAAAGGAAATAAAAGCAGGGAGCCTGGTTGGTTGGTTTGTTTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGAAATAAAAGCAGGGAGCCTGGTTGGTTGGTTTGTTTGTTTG  700

seq1  TTTTGTTTTGTTTAATAGTG-TTGCCAGGTGGGTTCTTCATGGTCTGCCT  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTAATAGTGTTTGCCAGGTGGGTTCTTCATGGTCTGCCT  750

seq1  TAATGTTGGAATCTGGTTAGCTCAGACAATCAATTTCTCAACCAGGTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGGAATCTGGTTAGCTCAGACAATCAATTTCTCAACCAGGTCAC  800

seq1  TCAAAACCACAAAGATCCACACTATGCTGACCTACAGTATTTTCTTGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCACAAAGATCCACACTATGCTGACCTACAGTATTTTCTTGCTC  850

seq1  CGGGTAGAAATTATATGAGAGTGGAG-TCAATTTAGATGGTCCACTGGCC  898
      | |||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  C-GGTAGAAATTATATGAGAGTGGAGTTCAATTTAGATGGTCCACTGG-C  898

seq1  CAGGGATTCTCCCT-GTATGTCCCCAACCAAAGAAGCTAGATTCGTAGGA  947
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CAGGGATTCTCCCTGGTATGTCCCCAACCAAAG-AGCTAGATTCGTAGGA  947

seq1  AGCTGAGCCTTTCTGATAATGATCATGGAGTAGTAGACAATTCTAGCCTC  997
      ||||||||||||||||| ||||||||||||||||||||||| ||||| ||
seq2  AGCTGAGCCTTTCTGAT-ATGATCATGGAGTAGTAGACAATCCTAGCTTC  996

seq1  CAACCAATGCCTCAGTTGCTTTCTTGAGTAGTTTTTGTTTTCCAAAGTGT  1047
          | ||||||||||||||||  |||||||  |||| ||  ||||||||
seq2  ---ACTATGCCTCAGTTGCTTTTCTGAGTAG--TTTGGTT--CAAAGTGT  1039

seq1  GTCTGACAGGACCTTGGTAAGAAAGTACA-GACTTACCCAGAAACTCTCT  1096
      ||||||| |||||| ||||   ||| ||| || ||||| | |||||||||
seq2  GTCTGAC-GGACCTGGGTA--GAAGGACATGAATTACCGA-AAACTCTCT  1085

seq1  ATTTAGA  1103
      |||||||
seq2  ATTTAGA  1092