BAC Information

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BAC

Clone NameB6Ng01-161G04
Chromosome8 (Build37)
Map Location 56,092,997 - 56,197,470
singlet/doubletdoublet
Overlap geneGpm6a, LOC667624, LOC100040156, LOC100040382
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneLOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G04.bB6Ng01-161G04.g
ACCDH954511DH954512
length4811,117
definitionDH954511|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G04, 5' end.DH954512|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,196,873 - 56,197,470)(56,092,997 - 56,094,123)
sequence
attctcattggacctttgcctgcttctctggctcatgcctgtctcgcttt
ttctcactatcaatgttttatctctcttttctgtctctcctttacacact
atgtgtgattacccaatactcactttacaattagtgggtatactgctggt
tttctccttggcttttgctgacaccaacatgtgaccttgcttgcatccct
aggaccctctaaagcatactttaattttaagtgccaatccatctgagctc
ttaccctaatgagagacaatgtctgggatctttggttcagttttgttctc
aatcctataggcaagttatttctctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtc
tgtctcactctcctcccccccccaacagagacatatagatacacacacac
atatttgtacatacacacatacattcacaca
gaattccttggtcttacatagtctggttcttaaatgatgactattttttt
ctttttttatagagttatatttttttaaaaaatgtgtgtaaattagatta
cttattaaaagctattttttccagtgtaagaaatgttgtaaaaaaaaaaa
aaaagctgtcagattatggaaacttttatctctaagtactctattccagg
cttatttggacactgttttgtccccttttaccgtctcttttgacaatatg
cccatgatcactgtcaggaattaaagatccaattcatcagctcctcatct
tatgtctatgttgaatttgtttacaccaattacaaggaatacattgagga
tattgtggcagcaatgcaaactaaatggagtactaccaaggacatagtct
tttccagaaatctagtttgtgactggtaagaaataataagtgatgagctg
tgtatcctagtcatacattttaaagtacctggagattgcactatgaaaaa
tcagtgggcatgggcagtatgacaaatgtcacttgaaaggtaagcatgta
ggtgagatctaccactgacattacaccatagctcctaattaagagttcca
ttcaggtgagacaggtaatgttctactgccatcattggtccccaggaggt
caaggtcataaaatcaagtatttttattattatatgctttttcattattt
tcagattgcctttagaaattacctaatatgttaatagctcatatttttta
ttatttttccatcaacttcaaagtacatgaagatattcatttctttatat
aatataactttaccaataaaagatatctgatattaaaagaagtatactag
ttgttaagattatttaaataaaatacttgaatgtttgtcattaaataata
agaatcatgggtacattttctgtaggaatatttttttgtccctgaagata
gaatattcagtgaccagtttgtagactggttatgagaaaggttaataatt
tttaattttcatcactgtttctaggatggacatttaatattgatgctaat
gataactaatttagtattgtttaatgtccaccataccagaagggtggaga
gaaaatacagcacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56196873_56197470
seq2: B6Ng01-161G04.b_49_535 (reverse)

seq1  TGTGTGAATGTATGTGTGTGCATGTGTGTGAGTGTACTTGTGTGCATGAT  50
                              ||||||| ||||  |||||| ||| |
seq2  ------------------------TGTGTGAATGTA--TGTGTGTATG-T  23

seq1  GCATACATGCCTGTGTGTGTCTGTATGTGTTTGGGCATGTGTCTTTGTAT  100
       || | |||  ||||||| |||              || ||||| ||| |
seq2  ACAAATATGTGTGTGTGTATCT--------------ATATGTCTCTGT-T  58

seq1  GTGGGGGGGTACAACTATTTGTATGTGTGTGATGAAGAAAAGGAAAGTTA  150
      | |||||||                               |||| |||  
seq2  GGGGGGGGG-------------------------------AGGAGAGT--  75

seq1  CACGAGTACAGAGAGGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200
         ||| ||||| |  |||| | | |||||||                  
seq2  ---GAG-ACAGACACACACACACACAGAGAGA------------------  103

seq1  GGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  250
                    ||||||||||||||||||||||||||||||||||||
seq2  --------------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  139

seq1  GAGAGAGAGAGAGAGAGAGAGAAATAACTTGCCTATAGGATTGAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAAATAACTTGCCTATAGGATTGAGAACAA  189

seq1  AACTGAACCAAAGATCCCAGACATTGTCTCTCATTAGGGTAAGAGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACCAAAGATCCCAGACATTGTCTCTCATTAGGGTAAGAGCTCAG  239

seq1  ATGGATTGGCACTTAAAATTAAAGTATGCTTTAGAGGGTCCTAGGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGGCACTTAAAATTAAAGTATGCTTTAGAGGGTCCTAGGGATGC  289

seq1  AAGCAAGGTCACATGTTGGTGTCAGCAAAAGCCAAGGAGAAAACCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGTCACATGTTGGTGTCAGCAAAAGCCAAGGAGAAAACCAGCAG  339

seq1  TATACCCACTAATTGTAAAGTGAGTATTGGGTAATCACACATAGTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCACTAATTGTAAAGTGAGTATTGGGTAATCACACATAGTGTGTA  389

seq1  AAGGAGAGACAGAAAAGAGAGATAAAACATTGATAGTGAGAAAAAGCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGACAGAAAAGAGAGATAAAACATTGATAGTGAGAAAAAGCGAG  439

seq1  ACAGGCATGAGCCAGAGAAGCAGGCAAAGGTCCAATGAGAATGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGAGCCAGAGAAGCAGGCAAAGGTCCAATGAGAATGAATTC  487

seq1: chr8_56092997_56094123
seq2: B6Ng01-161G04.g_68_1184

seq1  GAATTCCTTGGTCTTACATAGTCTGGTTCTTAAATGATGACTATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTCTTACATAGTCTGGTTCTTAAATGATGACTATTTTTTT  50

seq1  CTTTTTTTATAGAGTTATATTTTTTTAAAAAATGTGTGTAAATTAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTATAGAGTTATATTTTTTTAAAAAATGTGTGTAAATTAGATTA  100

seq1  CTTATTAAAAGCTATTTTTTCCAGTGTAAGAAATGTTGTAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAAGCTATTTTTTCCAGTGTAAGAAATGTTGTAAAAAAAAAAA  150

seq1  AAAAGCTGTCAGATTATGGAAACTTTTATCTCTAAGTACTCTATTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTCAGATTATGGAAACTTTTATCTCTAAGTACTCTATTCCAGG  200

seq1  CTTATTTGGACACTGTTTTGTCCCCTTTTACCGTCTCTTTTGACAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGGACACTGTTTTGTCCCCTTTTACCGTCTCTTTTGACAATATG  250

seq1  CCCATGATCACTGTCAGGAATTAAAGATCCAATTCATCAGCTCCTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATCACTGTCAGGAATTAAAGATCCAATTCATCAGCTCCTCATCT  300

seq1  TATGTCTATGTTGAATTTGTTTACACCAATTACAAGGAATACATTGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTATGTTGAATTTGTTTACACCAATTACAAGGAATACATTGAGGA  350

seq1  TATTGTGGCAGCAATGCAAACTAAATGGAGTACTACCAAGGACATAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGCAGCAATGCAAACTAAATGGAGTACTACCAAGGACATAGTCT  400

seq1  TTTCCAGAAATCTAGTTTGTGACTGGTAAGAAATAATAAGTGATGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAATCTAGTTTGTGACTGGTAAGAAATAATAAGTGATGAGCTG  450

seq1  TGTATCCTAGTCATACATTTTAAAGTACCTGGAGATTGCACTATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTAGTCATACATTTTAAAGTACCTGGAGATTGCACTATGAAAAA  500

seq1  TCAGTGGGCATGGGCAGTATGACAAATGTCACTTGAAAGGTAAGCATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGCATGGGCAGTATGACAAATGTCACTTGAAAGGTAAGCATGTA  550

seq1  GGTGAGATCTACCACTGACATTACACCATAGCTCCTAATTAAGAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATCTACCACTGACATTACACCATAGCTCCTAATTAAGAGTTCCA  600

seq1  TTCAGGTGAGACAGGTAATGTTCTACTGCCATCATTGGTCCCCAGGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGAGACAGGTAATGTTCTACTGCCATCATTGGTCCCCAGGAGGT  650

seq1  CAAGGTCATAAAATCAAGTATTTTTATTATTATATGCTTTTTCATTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATAAAATCAAGTATTTTTATTATTATATGCTTTTTCATTATTT  700

seq1  TCAGATTGCCTTTAGAAATTACCTAATATGTTAATAGCTCATATTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCCTTTAGAAATTACCTAATATGTTAATAGCTCATATTTTTTA  750

seq1  TTATTTTTCCATCAACTTCAAAGTACATGAAGATATTCATTTCTTTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCATCAACTTCAAAGTACATGAAGATATTCATTTCTTTATAT  800

seq1  AATATAACTTTACCAATAAAAGATATCTGATATT-AAAGAAGTATACTAG  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATATAACTTTACCAATAAAAGATATCTGATATTAAAAGAAGTATACTAG  850

seq1  TTGTTAAGATTATTTAAAATAAAATACTTGAATGTTTGTCATTAAAATAA  899
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TTGTTAAGATTATTT-AAATAAAATACTTGAATGTTTGTCATT-AAATAA  898

seq1  TAAGAATCATGGGTACATTTTCTGTAGGAAATATTTTTTTGTCCCTGAAG  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGAATCATGGGTACATTTTCTGTAGG-AATATTTTTTTGTCCCTGAAG  947

seq1  ATAGAATATTCAGTGACCAGTTTGTAAGACTGGTTATGAGAAAGGTTAAT  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAGAATATTCAGTGACCAGTTTGT-AGACTGGTTATGAGAAAGGTTAAT  996

seq1  AATTTTTTAATTTTCATCACTG-TTCTAGGATTGGACATTTTAATATTGA  1048
      || ||||||||||||||||||| |||||||| |||||| |||||||||| 
seq2  AA-TTTTTAATTTTCATCACTGTTTCTAGGA-TGGACA-TTTAATATTG-  1042

seq1  ATGCTAATGATAAACTAATTTAGTATGTGTCTAAATGTTCTACCCATTAC  1098
      ||||||||||| |||||||||||||| ||| | ||||| |   ||||  |
seq2  ATGCTAATGAT-AACTAATTTAGTAT-TGT-TTAATGTCC--ACCATACC  1087

seq1  AGAAGAG-GGAGAGAAAATACAGCACCTGT  1127
      ||||| | ||||||||||||||||||||||
seq2  AGAAGGGTGGAGAGAAAATACAGCACCTGT  1117