BAC Information

Click to search

BAC

Clone NameB6Ng01-162D05
Chromosome8 (Build37)
Map Location 22,908,588 - 23,089,879
singlet/doubletdoublet
Overlap geneDefb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1
Downstream geneAtp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D05.bB6Ng01-162D05.g
ACCDH955097DH955098
length1,0671,033
definitionDH955097|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D05, 5' end.DH955098|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,088,801 - 23,089,879)(22,908,588 - 22,909,627)
sequence
gaattcaaggaaaaccactacatccctcaatgatctactctcaatgatca
attacatctggaaagagcatctcattcctgcttcatcttaacaggttgca
tcaattcaaagacccttatcttgctatcatacaaatctgcttgctttctc
accatgctgctggccattattcttggagacagcttgtttgtttccccagt
taatgtttctttctgtccatgaagtggtccaattgggcagtttcactgtg
tcctcacagatacttgcttgtgacccagattcactgtattctcaggtatg
aagtggtagtcccagactgccagtagctgcctgagtaggaagttcgcttg
gggaaggccaatctagcatggtttttaaagagtttgttcccactagcaat
tagattaagtggcttccttcagatgctgtagctaagggctcctggacagc
aaggagagcagaccccaggtgtcttccttctgatccattattgatccccc
agtggctagaatggccaggaccttcctgtgatggcaggaacatggctttt
ctaatagctcctttgcttgcagtaaacacatcgatcttgttctagtgcgg
gctgtctcattttcaccgatttttttctcgtcaaggttcttgtcaccttt
tctctagatgaggccatcctttggtccagaatgggacaattcttgaggca
gcaaccgtgattttagcttgtctttgtgctgtcccatctacagtcagaac
tgtttttatttttcatctcagttaggaaaacctttttggcacttctagaa
gctgcaagtgtttatgcccatgaaactctcaagtatttggagcatccttt
ttctggatcccaaagattggctaacaaaagccaaatgtagagcccagttg
ttctcatggctacagtttcaaaaggaatgagggttttaaaaagcgtctca
ttaagcattcaagaagggcagggggcgtattctggtccatttgggtgggt
ggagggaaaactcaagtcagtttctgttcctgtagcagctgtggccaaga
aaatctccaaacttttc
gaattccacagattgggaaactattctgtctgttataggtttggtagaca
gttaacatctggaatatatgaagcatgtagaaaacaaaaggggagagggg
catatgatcagggatgagggatgagggggaagaagacaggctttccagac
acaatacactgtatcttaaatttctttatcagcatcgcttggtcatctaa
aaatgccccattgacaaagaccagcttcacgaacgctttaaagagacaga
cggactaccgctctggtggcaagtagcaaaactttactgaattctttagc
ttataaacatggggtatggctttgcaatttttgctcaaaaaataacattt
ttacttagttgcacctggcacacaatattgtcatttttggagtcattttc
tcataacaagaatgaacttcagaagaagaaactgtttatcagcagaccca
aggacatcctcctctcagggtaaatattaactcttgactaggaacaagga
aaaactctggcccacagaaagtaatgttaggacatccctctcttttagga
gggacagcccctgaactttcccccaattaactgtcctgaccctttcaggc
cagaaccaaaaggaagccattgttctcctcaccccattggtattgcctgt
caagcaaaatcttatcaaagaaacatcattcagtagaacagtttggaaag
acaccttgataaagaacataatgtagagctttgtttttaaatgtaaaaat
acaaccaagaataatgagaaactgaggaaaccactatttgactttaaaaa
aataatgattacaatggataggaactgctcagccttatgcagtaagaaaa
tccctgggaaaagatcatagatttaaagaagacatcaactaattaaaata
tgatgcaatggactagcatgttgctttatgtctctattacagcacatagt
ttgcctgttagaagatttctgctagtttaaagaccaatctgctctacaca
gtgattccacaccacggtgactacaagtgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23088801_23089879
seq2: B6Ng01-162D05.b_44_1110 (reverse)

seq1  GAAAAGTTTGGGGATTTTCTTGGCCACAGCTGCTTACAGGGAACAGAAAA  50
      ||||||||||| ||||||||||||||||||||| |||| ||||||| |||
seq2  GAAAAGTTTGGAGATTTTCTTGGCCACAGCTGC-TACA-GGAACAG-AAA  47

seq1  CTGACTTGGAGGTTTTCCCTTCCACCCACCCCAAATGGGACCAGAATACG  100
      ||||||||   |||||||| |||||||| ||||||| |||||||||||||
seq2  CTGACTTG--AGTTTTCCC-TCCACCCA-CCCAAAT-GGACCAGAATACG  92

seq1  CCCCCTGGCCCTTCCTTGAATGCTTAATGAGACGCTTTTTTAAAACCCTC  150
      |||||| |||||| ||||||||||||||||||||| ||||||||||||||
seq2  CCCCCT-GCCCTT-CTTGAATGCTTAATGAGACGC-TTTTTAAAACCCTC  139

seq1  ATTCCTTTTGAAACTGTAGCCATGAGAACAACTGGGCTCTACATTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTGAAACTGTAGCCATGAGAACAACTGGGCTCTACATTTGGCT  189

seq1  TTTGTTAGCCAATCTTTGGGATCCAGAAAAAGGATGCTCCAAATACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGCCAATCTTTGGGATCCAGAAAAAGGATGCTCCAAATACTTGA  239

seq1  GAGTTTCATGGGCATAAACACTTTGCAGCTTCTAGAAGTGCCAAAAAGGT  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGTTTCATGGGCATAAACAC-TTGCAGCTTCTAGAAGTGCCAAAAAGGT  288

seq1  TTTCCTAACTGAGATGAAAAATAAAAACAGTTCTGACTGTAGATGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAACTGAGATGAAAAATAAAAACAGTTCTGACTGTAGATGGGACA  338

seq1  GCACAAAGACAAGCTAAAATCACGGTTGCTGCCTCAAGAATTGTCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGACAAGCTAAAATCACGGTTGCTGCCTCAAGAATTGTCCCATT  388

seq1  CTGGACCAAAGGATGGCCTCATCTAGAGAAAAGGTGACAAGAACCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAAAGGATGGCCTCATCTAGAGAAAAGGTGACAAGAACCTTGAC  438

seq1  GAGAAAAAAATCGGTGAAAATGAGACAGCCCGCACTAGAACAAGATCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAATCGGTGAAAATGAGACAGCCCGCACTAGAACAAGATCGAT  488

seq1  GTGTTTACTGCAAGCAAAGGAGCTATTAGAAAAGCCATGTTCCTGCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACTGCAAGCAAAGGAGCTATTAGAAAAGCCATGTTCCTGCCATC  538

seq1  ACAGGAAGGTCCTGGCCATTCTAGCCACTGGGGGATCAATAATGGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGTCCTGGCCATTCTAGCCACTGGGGGATCAATAATGGATCAG  588

seq1  AAGGAAGACACCTGGGGTCTGCTCTCCTTGCTGTCCAGGAGCCCTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGACACCTGGGGTCTGCTCTCCTTGCTGTCCAGGAGCCCTTAGCT  638

seq1  ACAGCATCTGAAGGAAGCCACTTAATCTAATTGCTAGTGGGAACAAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCTGAAGGAAGCCACTTAATCTAATTGCTAGTGGGAACAAACTC  688

seq1  TTTAAAAACCATGCTAGATTGGCCTTCCCCAAGCGAACTTCCTACTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACCATGCTAGATTGGCCTTCCCCAAGCGAACTTCCTACTCAGG  738

seq1  CAGCTACTGGCAGTCTGGGACTACCACTTCATACCTGAGAATACAGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGGCAGTCTGGGACTACCACTTCATACCTGAGAATACAGTGAA  788

seq1  TCTGGGTCACAAGCAAGTATCTGTGAGGACACAGTGAAACTGCCCAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCACAAGCAAGTATCTGTGAGGACACAGTGAAACTGCCCAATTG  838

seq1  GACCACTTCATGGACAGAAAGAAACATTAACTGGGGAAACAAACAAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTCATGGACAGAAAGAAACATTAACTGGGGAAACAAACAAGCTG  888

seq1  TCTCCAAGAATAATGGCCAGCAGCATGGTGAGAAAGCAAGCAGATTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGAATAATGGCCAGCAGCATGGTGAGAAAGCAAGCAGATTTGTA  938

seq1  TGATAGCAAGATAAGGGTCTTTGAATTGATGCAACCTGTTAAGATGAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAAGATAAGGGTCTTTGAATTGATGCAACCTGTTAAGATGAAGC  988

seq1  AGGAATGAGATGCTCTTTCCAGATGTAATTGATCATTGAGAGTAGATCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGATGCTCTTTCCAGATGTAATTGATCATTGAGAGTAGATCAT  1038

seq1  TGAGGGATGTAGTGGTTTTCCTTGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TGAGGGATGTAGTGGTTTTCCTTGAATTC  1067

seq1: chr8_22908588_22909627
seq2: B6Ng01-162D05.g_68_1099

seq1  GAATTCCACAGATTGGGAAACTATTCTGTCTGTTATAGGTTTGGTAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGATTGGGAAACTATTCTGTCTGTTATAGGTTTGGTAGACA  50

seq1  GTTAACATCTGGAATATATGAAGCATGTAGAAAACAAAAGGGGAGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCTGGAATATATGAAGCATGTAGAAAACAAAAGGGGAGAGGGG  100

seq1  CATATGATCAGGGATGAGGGATGAGGGGGAAGAAGACAGGCTTTCCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATCAGGGATGAGGGATGAGGGGGAAGAAGACAGGCTTTCCAGAC  150

seq1  ACAATACACTGTATCTTAAATTTCTTTATCAGCATCGCTTGGTCATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACACTGTATCTTAAATTTCTTTATCAGCATCGCTTGGTCATCTAA  200

seq1  AAATGCCCCATTGACAAAGACCAGCTTCACGAACGCTTTAAAGAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCCATTGACAAAGACCAGCTTCACGAACGCTTTAAAGAGACAGA  250

seq1  CGGACTACCGCTCTGGTGGCAAGTAGCAAAACTTTACTGAATTCTTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTACCGCTCTGGTGGCAAGTAGCAAAACTTTACTGAATTCTTTAGC  300

seq1  TTATAAACATGGGGTATGGCTTTGCAATTTTTGCTCAAAAAATAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACATGGGGTATGGCTTTGCAATTTTTGCTCAAAAAATAACATTT  350

seq1  TTACTTAGTTGCACCTGGCACACAATATTGTCATTTTTGGAGTCATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGTTGCACCTGGCACACAATATTGTCATTTTTGGAGTCATTTTC  400

seq1  TCATAACAAGAATGAACTTCAGAAGAAGAAACTGTTTATCAGCAGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAAGAATGAACTTCAGAAGAAGAAACTGTTTATCAGCAGACCCA  450

seq1  AGGACATCCTCCTCTCAGGGTAAATATTAACTCTTGACTAGGAACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCCTCCTCTCAGGGTAAATATTAACTCTTGACTAGGAACAAGGA  500

seq1  AAAACTCTGGCCCACAGAAAGTAATGTTAGGACATCCCTCTCTTTTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGGCCCACAGAAAGTAATGTTAGGACATCCCTCTCTTTTAGGA  550

seq1  GGGACAGCCCCTGAACTTTCCCCCAATTAACTGTCCTGACCCTTTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCCCCTGAACTTTCCCCCAATTAACTGTCCTGACCCTTTCAGGC  600

seq1  CAGAACCAAAAGGAAGCCATTGTTCTCCTCACCCCATTGGTATTGCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAAAAGGAAGCCATTGTTCTCCTCACCCCATTGGTATTGCCTGT  650

seq1  CAAGCAAAATCTTATCAAAGAAACATCATTCAGTAGAACAGTTTGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAATCTTATCAAAGAAACATCATTCAGTAGAACAGTTTGGAAAG  700

seq1  ACACCTTGATAAAGAACATAATGTAGAGCTTTGTTTTTAAATGTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGATAAAGAACATAATGTAGAGCTTTGTTTTTAAATGTAAAAAT  750

seq1  ACAACCAAGAATAATGAGAAACTGAGGAAACCACTATTTGACTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAGAATAATGAGAAACTGAGGAAACCACTATTTGACTTTAAAAA  800

seq1  AA-AATGATTACAATGAATAGGAACTGCTCAGCCTTATGCAGTAAGAAAA  849
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATAATGATTACAATGGATAGGAACTGCTCAGCCTTATGCAGTAAGAAAA  850

seq1  TACCCTGGGAAAAGATCATAGATTTTAAAGAAGACATCAACTATTTAAAA  899
      | |||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  T-CCCTGGGAAAAGATCATAGA-TTTAAAGAAGACATCAACTAATTAAAA  898

seq1  ATTATGATGCAATGGACAAGCATGTTGCCTTATGTCTCTAATTACAGCAC  949
        ||||||||||||||| |||||||||| |||||||||| ||||||||||
seq2  --TATGATGCAATGGACTAGCATGTTGCTTTATGTCTCT-ATTACAGCAC  945

seq1  ATATATTGCCCTGTTAGGAGAATTTCTGCAAG-TTAGAGACCAATCTGCT  998
      |||  ||| |||||||| || |||||||| || ||| |||||||||||||
seq2  ATAGTTTG-CCTGTTAGAAG-ATTTCTGCTAGTTTAAAGACCAATCTGCT  993

seq1  CTACACAGTGATTTCCACACCACTGTGGACTACAAAGTGAGA  1040
      ||||||||||| ||||||||||| || |||||| ||||||||
seq2  CTACACAGTGA-TTCCACACCACGGT-GACTAC-AAGTGAGA  1032