BAC Information

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BAC

Clone NameB6Ng01-162F10
Chromosome8 (Build37)
Map Location 111,028,090 - 111,193,755
singlet/doubletdoublet
Overlap genenone
Upstream geneWwp2, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F10.bB6Ng01-162F10.g
ACCDH955201DH955202
length1,1001,137
definitionDH955201|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F10, 5' end.DH955202|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,192,656 - 111,193,755)(111,028,090 - 111,029,256)
sequence
gaattcctctccagccttactgttgtctcatggcttcagggggctcttcc
agccacccctgtgcattgctaagaccagtgctggctgtgaattctgcatc
agtaacttgctctttcaacacaaggcttgatcaaactggctgtttctcag
gtagagccaaagagccaattaagagacagcataacctgggatgagtgaaa
ttccctttcaaatcatgtcagccggagcagatgttgtcacgaaatttgat
gttatggatttatttcctcatacaaagtctgaaaggggaaaatagcgtaa
gagatgaaatacgaattggacatgtctatagagtgtgaattggattcaag
acaaaatattgtgaatggttaatagggtcagtctaagtatacttgttgaa
ataatctcttggatatgcaaatgttctgagaaccacactgtcaaatatct
attgtgccctcttatctgtgtgttcgcagaactcctacatgtaataacaa
atgaaaactgcggctctgaaaaataatgtcaccctaaaataatacttttc
tttgaatagtaatttttttattgtcagagatttttttttatttttttatt
ttttatttttttattttatggttgacgcacactagccttccgggttctta
acaccgaagtctgaagatattttgagaggtgaacatagaggaggatggag
ctaggaagggagcaaggcaggttgcatgtgcaacctatcctgggttgtac
agtctgccattatcccctaggaggtcttggtattccactcccccacccct
cggaggaattcttcctgacttgcaggcctcccttagtagagttcccttcc
tttggggatgctatcttaggatctcagatacattattacgggcttccacc
tcaccataccgatcagccccattacacagcaggatgggctgaggagccct
ccctcatttctgagaactgggttcctggaaagggaatggacagatgaaac
agagacgggggacaggtagattgatgacctcacatactactcacattcta
gacaatctaacccagcgggtagctacttaatatacttcaaaataaatgaa

gaattctcagtccttcgacttcagccttgttctctagctttgctgactta
cactaccattcctggctaagcatgaatattctagaaactgaattcaaact
actatctggaaatagtttgtcagtaaagtaaaaagaagacagttgattat
ctgtgactacccaaagataattgttagaaattttaaagatgaaaaaaata
aaaacttgtatcaaatgagctctacacttgatacattcaatagacacaca
cacatacatacatacatacatacatacatacatacatatagttcatctag
attatatatggtaatggcatatgtctgataagagtttcagggaaagaaat
atgaagagtgttaaaacatgctagatataaagaaaatgaaataagaataa
ttccatggcagacacataacaacaaaactacccccccccaaaatgtgaag
tgaagagaaagaagaagaagagtggggtctggctcagtgggttagagtgc
ttgctacagaggcatgaagatttgagttctaatccacagcacccaggtac
aaagccagacatggctacccatgtacctgtaaccaaagcattgtatgagg
gcagagtctacagaactcactggctgccgatctagctccaggttcaggga
gagacccccatctccatggcaaatgacagaggatgaaagagcagggcacc
tgttatcctccttggcctcttcagaccgggacactggcacacacatatgt
acacatcgggaagaaataaagagctaaatgaagactttattgaactgcag
atttatcagttgcaaagagagataagaggcaaagatcagaggaccaaaaa
agacatgagaaagaaagttaactgtcaacatatacctgcctaaacttttt
ttgaaggctaagagaaaaaatgaggtctcttgggtattttataaactggc
tattaaatatctctaaaggactaaaacgaacctaagggattctataacca
aggcagtgaacaaagtatgctatcattagcttttacatgtaaaacatctt
tcaattagagttaaatgatcactctaggccactgaatcaggagtttcaaa
ggtaaccaatactccgggagcatgtcaatcctttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111192656_111193755
seq2: B6Ng01-162F10.b_48_1147 (reverse)

seq1  TTCATTTA-TCTGAAGTATATTTTAGTAGCTA-CCGGTGGGTTATAGATT  48
      |||||||| | ||||||||| || |||||||| ||| |||||  ||||||
seq2  TTCATTTATTTTGAAGTATA-TTAAGTAGCTACCCGCTGGGT--TAGATT  47

seq1  GTTCTAGGATGTGAGTAGTATGTTGAGGTCATCAATCTA-CTGTCCCCCT  97
      | ||||| |||||||||||||| |||||||||||||||| ||||||||| 
seq2  G-TCTAGAATGTGAGTAGTATG-TGAGGTCATCAATCTACCTGTCCCCC-  94

seq1  GTCTCTGTTTCATCTGTCCATTCCCTTTCCAGGAACCCAGTTCTCAGAAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTTTCATCTGTCCATTCCCTTTCCAGGAACCCAGTTCTCAGAAA  144

seq1  TGAGGGAGGGCTCCTCAGCCCATCCTGCTGTGTAATGGGGCTGATCGGTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGGCTCCTCAGCCCATCCTGCTGTGTAATGGGGCTGATCGGTA  194

seq1  TGGTGAGGTGGTAG-CCGT-ATAATGTATCTGAGATCCTTAAGATAGCAT  245
      ||||||||||| || |||| |||||||||||||||||| |||||||||||
seq2  TGGTGAGGTGGAAGCCCGTAATAATGTATCTGAGATCC-TAAGATAGCAT  243

seq1  CCCC-AAGGAAGGGAACTCTACTAAGGGAGGCCTGC-AGTCAGGAAGAAT  293
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCCAAAGGAAGGGAACTCTACTAAGGGAGGCCTGCAAGTCAGGAAGAAT  293

seq1  TCCTCCGAGGGGTGGGGGAGTGGAATACCAAGACCTCCTAGGGGATAATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGAGGGGTGGGGGAGTGGAATACCAAGACCTCCTAGGGGATAATG  343

seq1  GCAGACTGTACAACCCAGGATAGGTTGCACATGCAACCTGCCTTGCTCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTACAACCCAGGATAGGTTGCACATGCAACCTGCCTTGCTCCC  393

seq1  TTCCTAGCTCCATCCTCCTCTATGTTCACCTCTCAAAATATCTTCAGACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTCCATCCTCCTCTATGTTCACCTCTCAAAATATCTTCAGACT  443

seq1  TCGGTGTTAAGAACCCGGAAGGCTAGTGTGCGTCAACCATAAAATAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTTAAGAACCCGGAAGGCTAGTGTGCGTCAACCATAAAATAAAAA  493

seq1  AATAAAAAATAAAAAAATAAAAAAAAATCTCTGACAATAAAAAAATTACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAAAAAAATAAAAAAAAATCTCTGACAATAAAAAAATTACT  543

seq1  ATTCAAAGAAAAGTATTATTTTAGGGTGACATTATTTTTCAGAGCCGCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAAAAGTATTATTTTAGGGTGACATTATTTTTCAGAGCCGCAG  593

seq1  TTTTCATTTGTTATTACATGTAGGAGTTCTGCGAACACACAGATAAGAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGTTATTACATGTAGGAGTTCTGCGAACACACAGATAAGAGG  643

seq1  GCACAATAGATATTTGACAGTGTGGTTCTCAGAACATTTGCATATCCAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATAGATATTTGACAGTGTGGTTCTCAGAACATTTGCATATCCAAG  693

seq1  AGATTATTTCAACAAGTATACTTAGACTGACCCTATTAACCATTCACAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTCAACAAGTATACTTAGACTGACCCTATTAACCATTCACAAT  743

seq1  ATTTTGTCTTGAATCCAATTCACACTCTATAGACATGTCCAATTCGTATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTTGAATCCAATTCACACTCTATAGACATGTCCAATTCGTATT  793

seq1  TCATCTCTTACGCTATTTTCCCCTTTCAGACTTTGTATGAGGAAATAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTACGCTATTTTCCCCTTTCAGACTTTGTATGAGGAAATAAAT  843

seq1  CCATAACATCAAATTTCGTGACAACATCTGCTCCGGCTGACATGATTTGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACATCAAATTTCGTGACAACATCTGCTCCGGCTGACATGATTTGA  893

seq1  AAGGGAATTTCACTCATCCCAGGTTATGCTGTCTCTTAATTGGCTCTTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTTCACTCATCCCAGGTTATGCTGTCTCTTAATTGGCTCTTTG  943

seq1  GCTCTACCTGAGAAACAGCCAGTTTGATCAAGCCTTGTGTTGAAAGAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCTGAGAAACAGCCAGTTTGATCAAGCCTTGTGTTGAAAGAGCA  993

seq1  AGTTACTGATGCAGAATTCACAGCCAGCACTGGTCTTAGCAATGCACAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGATGCAGAATTCACAGCCAGCACTGGTCTTAGCAATGCACAGG  1043

seq1  GGTGGCTGGAAGAGCCCCCTGAAGCCATGAGACAACAGTAAGGCTGGAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGAAGAGCCCCCTGAAGCCATGAGACAACAGTAAGGCTGGAGA  1093

seq1  GGAATTC  1100
      |||||||
seq2  GGAATTC  1100

seq1: chr8_111028090_111029256
seq2: B6Ng01-162F10.g_68_1204

seq1  GAATTCTCAGTCCTTCGACTTCAGCCTTGTTCTCTAGCTTTGCTGACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCCTTCGACTTCAGCCTTGTTCTCTAGCTTTGCTGACTTA  50

seq1  CACTACCATTCCTGGCTAAGCATGAATATTCTAGAAACTGAATTCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCATTCCTGGCTAAGCATGAATATTCTAGAAACTGAATTCAAACT  100

seq1  ACTATCTGGAAATAGTTTGTCAGTAAAGTAAAAAGAAGACAGTTGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGGAAATAGTTTGTCAGTAAAGTAAAAAGAAGACAGTTGATTAT  150

seq1  CTGTGACTACCCAAAGATAATTGTTAGAAATTTTAAAGATGAAAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTACCCAAAGATAATTGTTAGAAATTTTAAAGATGAAAAAAATA  200

seq1  AAAACTTGTATCAAATGAGCTCTACACTTGATACATTCAATAGACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTATCAAATGAGCTCTACACTTGATACATTCAATAGACACACA  250

seq1  CACATACATACATACATACATACATACATACATACATATAGTTCATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACATACATACATACATACATACATACATATAGTTCATCTAG  300

seq1  ATTATATATGGTAATGGCATATGTCTGATAAGAGTTTCAGGGAAAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATGGTAATGGCATATGTCTGATAAGAGTTTCAGGGAAAGAAAT  350

seq1  ATGAAGAGTGTTAAAACATGCTAGATATAAAGAAAATGAAATAAGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGTGTTAAAACATGCTAGATATAAAGAAAATGAAATAAGAATAA  400

seq1  TTCCATGGCAGACACATAACAACAAAACTACCCCCCCCCAAAATGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGCAGACACATAACAACAAAACTACCCCCCCCCAAAATGTGAAG  450

seq1  TGAAGAGAAAGAAGAAGAAGAGTGGGGTCTGGCTCAGTGGGTTAGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAAAGAAGAAGAAGAGTGGGGTCTGGCTCAGTGGGTTAGAGTGC  500

seq1  TTGCTACAGAGGCATGAAGATTTGAGTTCTAATCCACAGCACCCAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGAGGCATGAAGATTTGAGTTCTAATCCACAGCACCCAGGTAC  550

seq1  AAAGCCAGACATGGCTACCCATGTACCTGTAACCAAAGCATTGTATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGACATGGCTACCCATGTACCTGTAACCAAAGCATTGTATGAGG  600

seq1  GCAGAGTCTACAGAACTCACTGGCTGCCGATCTAGCTCCAGGTTCAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCTACAGAACTCACTGGCTGCCGATCTAGCTCCAGGTTCAGGGA  650

seq1  GAGACCCCCATCTCCATGGCAAATGACAGAGGATGAAAGAGCAGGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCCATCTCCATGGCAAATGACAGAGGATGAAAGAGCAGGGCACC  700

seq1  TGTTATCCTCCTTGGCCTCTTCAGACCGGGACACTGGCACACACATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCTCCTTGGCCTCTTCAGACCGGGACACTGGCACACACATATGT  750

seq1  ACACATC-GGAAGAAATAAAGAGCTAAATGAAGAC-TTAATGAACTGCAG  798
      ||||||| ||||||||||||||||||||||||||| ||| ||||||||||
seq2  ACACATCGGGAAGAAATAAAGAGCTAAATGAAGACTTTATTGAACTGCAG  800

seq1  ATTTATCAGTTGCAAAGAGAGATAAGAGGCAAAAGATCAGAGGACCAAAA  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTATCAGTTGCAAAGAGAGATAAGAGGC-AAAGATCAGAGGACCAAAA  849

seq1  AAGACATGAGAAAGAAAGTTAACTGTCAACATATACCTGCCTAAACTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGAGAAAGAAAGTTAACTGTCAACATATACCTGCCTAAACTTTT  899

seq1  TTTGAAGGCTAAGAGAAAAAATGAGGTTCTCTTTGGGTA-TTTATAAACT  947
      |||||||||||||||||||||||||| |||| ||||||| ||||||||||
seq2  TTTGAAGGCTAAGAGAAAAAATGAGG-TCTC-TTGGGTATTTTATAAACT  947

seq1  GGCTATTAAATATCTCTAAAAGTACTAAAACGGAACCTAAAGGGAATTCT  997
      ||||||||||||||||| |||| |||||||| ||||||||  || |||||
seq2  GGCTATTAAATATCTCT-AAAGGACTAAAAC-GAACCTAA--GGGATTCT  993

seq1  AATAACCAAGGGCAGTGAACAAAGTATGCTAATTCATTTAGCTTTTTACA  1047
       |||||||| |||||||||||||||||||||  ||| ||||| |||||||
seq2  -ATAACCAA-GGCAGTGAACAAAGTATGCTA--TCA-TTAGC-TTTTACA  1037

seq1  TTTTAAAACATCTTTTCATTTTAGAGTTAAAATGATCCACTTCTAGGCCA  1097
       | ||||||||||||  |  |||||||| ||||||| ||| |||||||||
seq2  -TGTAAAACATCTTTCAA--TTAGAGTT-AAATGAT-CAC-TCTAGGCCA  1081

seq1  ACCTGAATTCAGGAGGTTTTCAAAAGGTAAACCCATTTACT-CGGGAGCA  1146
        ||||| |||||||  |||| ||||||||  |||  |||| ||||||||
seq2  --CTGAA-TCAGGAG--TTTC-AAAGGTAA--CCA-ATACTCCGGGAGCA  1122

seq1  TGGTGGAAATCCTGTTTTATT  1167
         ||  |||||   ||||||
seq2  ---TGTCAATCC---TTTATT  1137