This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-162F16
Chromosome
8 (Build37)
Map Location
31,308,065 - 31,467,515
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Unc5d
,
LOC100041237
,
EG628189
Downstream gene
LOC547008
,
Dusp26
,
Rnf122
,
BC019943
,
Rbm13
,
Fut10
,
LOC666330
,
LOC666568
Link
Open Mouse BAC browser
Click to get alignment info.
name
Unc5d
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:210801
MGI:2389364
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041237
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041237
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 150 ESTs, 2 Proteins
pseudo
: _no_value
name
EG628189
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:628189
MGI:3644291
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein
name
LOC547008
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:547008
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
pseudo
: _no_value
name
Dusp26
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66959
MGI:1914209
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rnf122
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68867
MGI:1916117
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
BC019943
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:234138
MGI:2384576
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rbm13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67920
MGI:1915170
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fut10
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:171167
MGI:2384748
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
LOC666330
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666330
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
LOC666568
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666568
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Unc5d
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142359035
GeneID:210801
MGI:2389364
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: unc-5 homolog D (C. elegans)
transcript_id
: NM_153135.2
name
EG628189
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:82916696
GeneID:628189
MGI:3644291
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein
product
: predicted gene, EG628189
transcript_id
: XM_892922.1
name
Dusp26
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802511
GeneID:66959
MGI:1914209
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dual specificity phosphatase 26 (putative)
transcript_id
: NM_025869.2
name
Rnf122
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129848
GeneID:68867
MGI:1916117
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ring finger protein 122
transcript_id
: NM_175136.2
name
BC019943
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31542189
GeneID:234138
MGI:2384576
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cDNA sequence BC019943
transcript_id
: NM_144927.2
name
Rbm13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142377211
GeneID:67920
MGI:1915170
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RNA binding motif protein 13
transcript_id
: NM_026453.2
name
Fut10
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:42476112
GeneID:171167
MGI:2384748
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fucosyltransferase 10
transcript_id
: NM_134161.2
name
Fut10
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382453
GeneID:171167
MGI:2384748
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fucosyltransferase 10
transcript_id
: NM_001012517.3
name
Unc5d
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23346575
GeneID:210801
MGI:2389364
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006915 - apoptosis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]; GO:0007275 - development [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: unc5 homolog (C. elegans) 4
product
: netrin receptor Unc5h4
protein_id
: NP_694775.1
name
EG628189
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82916697
GeneID:628189
MGI:3644291
definition
codon_start
: 1
product
: similar to testis-specific protein
protein_id
: XP_898015.1
name
Dusp26
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27229024
CCDS:CCDS22219.1
GeneID:66959
MGI:1914209
definition
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]
GO_process
: GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]
codon_start
: 1
note
: dual-specificity phosphatase SKRP3
product
: dual specificity phosphatase 26
protein_id
: NP_080145.1
name
Rnf122
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29611656
CCDS:CCDS22220.1
GeneID:68867
MGI:1916117
definition
GO_component
: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
product
: ring finger protein 122 homolog
protein_id
: NP_780345.1
name
BC019943
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542190
CCDS:CCDS22221.1
GeneID:234138
MGI:2384576
definition
GO_function
: GO:0005488 - binding [Evidence IEA]
codon_start
: 1
product
: hypothetical protein LOC234138
protein_id
: NP_659176.2
name
Rbm13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33468997
CCDS:CCDS22222.1
GeneID:67920
MGI:1915170
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
codon_start
: 1
product
: RNA binding motif protein 13
protein_id
: NP_080729.1
name
Fut10
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:60302885
CCDS:CCDS22223.1
GeneID:171167
MGI:2384748
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008417 - fucosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]
GO_process
: GO:0006486 - protein amino acid glycosylation [Evidence IEA]
codon_start
: 1
note
: isoform Fut10A is encoded by transcript variant A
product
: fucosyltransferase 10 isoform Fut10A
protein_id
: NP_001012535.1
name
Fut10
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859773
GeneID:171167
MGI:2384748
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008417 - fucosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]
GO_process
: GO:0006486 - protein amino acid glycosylation [Evidence IEA]
codon_start
: 1
product
: fucosyltransferase 10
protein_id
: NP_598922.1
name
LOC666330
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666330
definition
number
: 1
pseudo
: _no_value
name
LOC666568
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666568
definition
number
: 2
pseudo
: _no_value
name
LOC666568
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666568
definition
number
: 1
pseudo
: _no_value
name
LOC100041237
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149258529
GeneID:100041237
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 150 ESTs, 2 Proteins
product
: similar to MNUDC protein
pseudo
: _no_value
transcript_id
: XR_032524.1
name
LOC547008
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149258574
GeneID:547008
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
product
: similar to ribosomal protein L29
pseudo
: _no_value
transcript_id
: XR_033786.1
clone name
MSMg01-273C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-177H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122A04
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-394N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-071L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-438J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-519A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-138L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288H22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342P03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400D14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-459F08
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-487C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-205P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188K19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-427B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331B01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-408C10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-311B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482A05
singlet/doublet
singlet
plural/unique
unique
clone name
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