BAC Information

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BAC

Clone NameB6Ng01-162F16
Chromosome8 (Build37)
Map Location 31,308,065 - 31,467,515
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5d, LOC100041237, EG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F16.bB6Ng01-162F16.g
ACCDH955212DH955213
length9541,104
definitionDH955212|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F16, 5' end.DH955213|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,308,065 - 31,309,020)(31,466,414 - 31,467,515)
sequence
gaattcaataatgtgccaggtgaaaagctaacctcttttcaaaatgatag
taaaggaaagtatattcaaaatgctttgactccatgatagtttttaaaaa
gttttcacacattttcttaaaaatgtcttcacgacttcctcagatgtgaa
gaacaaagttcaaaaatcaggaatgattaaatcattctgtatccacaact
atgagtccttttgaaatgtttcaaaagttgtaagattttaatggtttaaa
ttcttgactaaattctctagtttgaactctataaaaagctaaagatggct
cctattaattttttttgtcattattctgctcacaaagccttcaatggctc
tgtgttgcctaattaattagatgcaagttcctaattgaagaacatatagg
ttttcactgccatttacacttgacagtgctttctgatctcattctcctaa
cagccatgacttttgccacccatccctggctgccgttcacattctttcct
ttattaatccctattcctctgcttttattaggctcccacataccttcttt
gttttccagtgattttatgttcctttttcacaaccaaaatattatcttct
ccatggttcaggtctgtttcttccgtcaagctcttttccatctttcagtg
aacttcctactacattttacatcaaaagatgggacttcttactgttttat
tgttctatttcccccattaagttgtaagggaaaatgtcacttcttgacta
catttcttctagggttctcctcactgtcagtactcaatcagataaaatta
agacttaatgttggccttggtgaagcctttgctgacttgaatttgtcttt
tgtcatttggaacagttagtattttcagatcacaccaccacttgccattc
tttttctttgtttgtctgttttgtttgtttgtttgttgtttggggggggt
tgtt
gaattcattatgttttgggtaaagttccataaactgagacttgagtgtga
ggtggggtacccatgtccccagtgtcatgctgatactcatatagctagta
aaacatctgtgttctttgagcttcagaaggctttttcttatccttccagt
acagaaaaaggatgctcaggataagagagtgatggagtattccggaaggg
tttgtgggggagctactgaagaaactgatgtccaattagacagggacaaa
ataagctaaaaagaggaaggaaaaatgattcttatctctttcttattgag
agacagaaaatcaagtaagagaactgcaagatctttggccctggtcttgg
tgttttataacaggtacccacaaattctcagactgtaagttctagaagca
ctctgctagttagggattccatcgctgtgaagagacaccatgaccaagga
aattattacaggtttagaggttcagtccattatcatcaaggtgggaagca
tggcagcatccaggcagacctggcacaagaggaactgagagttcttctgt
ctcttgatctgcaacatccagaaaaaaaaaagtgactcttctgcactggt
ccgagcttcaaagcccaccccaacagtgacacacttcctccaacatggct
acacctcctaactgtaccactccctatggtctaagtatactgaaactacc
acagcaagcttctgtgaatagaggcatttgaaatgggactgaagcagacc
aactttcctcatttctacataggacttctaataataaagtgactaattcc
cctgagatattcctcagcatagtgttcattctcttttttacagagtacat
acaaatcattgaaagttgaataaaaaccagccacagacagaacacatagt
ttaatggttttcaaaaagtgttacttttccttcgctagtcctggacctcc
tttcacctgtgagactatccaaaagcaaggtactctgcacaaatcccatc
catgcttcacaggaggaagagacattatgctttctgatgtcttggaagaa
gcaacctggccataaggaagatattatagcaataagtcattccttttcct
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_31308065_31309020
seq2: B6Ng01-162F16.b_49_1002

seq1  GAATTCAATAATGTGCCAGGTGAAAAGCTAACCTCTTTTCAAAATGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATGTGCCAGGTGAAAAGCTAACCTCTTTTCAAAATGATAG  50

seq1  TAAAGGAAAGTATATTCAAAATGCTTTGACTCCATGATAGTTTTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAGTATATTCAAAATGCTTTGACTCCATGATAGTTTTTAAAAA  100

seq1  GTTTTCACACATTTTCTTAAAAATGTCTTCACGACTTCCTCAGATGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACACATTTTCTTAAAAATGTCTTCACGACTTCCTCAGATGTGAA  150

seq1  GAACAAAGTTCAAAAATCAGGAATGATTAAATCATTCTGTATCCACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTTCAAAAATCAGGAATGATTAAATCATTCTGTATCCACAACT  200

seq1  ATGAGTCCTTTTGAAATGTTTCAAAAGTTGTAAGATTTTAATGGTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTTTTGAAATGTTTCAAAAGTTGTAAGATTTTAATGGTTTAAA  250

seq1  TTCTTGACTAAATTCTCTAGTTTGAACTCTATAAAAAGCTAAAGATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACTAAATTCTCTAGTTTGAACTCTATAAAAAGCTAAAGATGGCT  300

seq1  CCTATTAATTTTTTTTGTCATTATTCTGCTCACAAAGCCTTCAATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAATTTTTTTTGTCATTATTCTGCTCACAAAGCCTTCAATGGCTC  350

seq1  TGTGTTGCCTAATTAATTAGATGCAAGTTCCTAATTGAAGAACATATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCCTAATTAATTAGATGCAAGTTCCTAATTGAAGAACATATAGG  400

seq1  TTTTCACTGCCATTTACACTTGACAGTGCTTTCTGATCTCATTCTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTGCCATTTACACTTGACAGTGCTTTCTGATCTCATTCTCCTAA  450

seq1  CAGCCATGACTTTTGCCACCCATCCCTGGCTGCCGTTCACATTCTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGACTTTTGCCACCCATCCCTGGCTGCCGTTCACATTCTTTCCT  500

seq1  TTATTAATCCCTATTCCTCTGCTTTTATTAGGCTCCCACATACCTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATCCCTATTCCTCTGCTTTTATTAGGCTCCCACATACCTTCTTT  550

seq1  GTTTTCCAGTGATTTTATGTTCCTTTTTCACAACCAAAATATTATCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAGTGATTTTATGTTCCTTTTTCACAACCAAAATATTATCTTCT  600

seq1  CCATGGTTCAGGTCTGTTTCTTCCGTCAAGCTCTTTTCCATCTTTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCAGGTCTGTTTCTTCCGTCAAGCTCTTTTCCATCTTTCAGTG  650

seq1  AACTTCCTACTACATTTTACATCAAAAGATGGGACTTCTTACTGTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTACTACATTTTACATCAAAAGATGGGACTTCTTACTGTTTTAT  700

seq1  TGTTCTATTTCCCCCATTAAGTTGTAAGGGAAAATGTCACTTCTTGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATTTCCCCCATTAAGTTGTAAGGGAAAATGTCACTTCTTGACTA  750

seq1  CATTTCTTCTAGGGTTCTCCTCACTGTCAGTACTCAATCAGATAAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTCTAGGGTTCTCCTCACTGTCAGTACTCAATCAGATAAAATTA  800

seq1  AGACTTAATGTTGGCCTTGGTGAAGCCTTTGCTGACTTGAATTTGTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAATGTTGGCCTTGGTGAAGCCTTTGCTGACTTGAATTTGTCTTT  850

seq1  TGTCATTTGGAACAGTTAGTATTTTCAGATCACACCACCACTTGCCATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTGGAACAGTTAGTATTTTCAGATCACACCACCACTTGCCATTC  900

seq1  TTTTTCTTTGTTTGTCTGTTTTGTTTTGTTTGTTTGTTTGTTTTGGGGGG  950
      ||||||||||||||||||||||| |||||||||||| |||||| ||||||
seq2  TTTTTCTTTGTTTGTCTGTTTTG-TTTGTTTGTTTG-TTGTTTGGGGGGG  948

seq1  GTTGTT  956
      ||||||
seq2  GTTGTT  954

seq1: chr8_31466414_31467515
seq2: B6Ng01-162F16.g_68_1171 (reverse)

seq1  CACACAGGAAA--GAATGACCTTAATTGCTAT-ATATCTT-CTTATGACC  46
      |||| ||||||  |||||||  | |||||||| ||||||| |||||| ||
seq2  CACA-AGGAAAAGGAATGAC--TTATTGCTATAATATCTTCCTTATGGCC  47

seq1  AGGTTGC-TCTTCC-AGACATCAGAAAGCATTATGTCTC-TCCTCCTTGT  93
      ||||||| |||||| |||||||||||||||| ||||||| |||||| |||
seq2  AGGTTGCTTCTTCCAAGACATCAGAAAGCATAATGTCTCTTCCTCC-TGT  96

seq1  GAAGCATGGATGGGGATTTGTGCAGAGTACCTTGCTTTTGGATAGTCTCA  143
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGGAT-GGGATTTGTGCAGAGTACCTTGCTTTTGGATAGTCTCA  145

seq1  CAGGTGAAAGGAGGTCCCAGGACTAGCGAAGG-AAAGTAACACTTTTTTG  192
      ||||||||||||||| |||||||||||||||| |||||||||| ||||||
seq2  CAGGTGAAAGGAGGT-CCAGGACTAGCGAAGGAAAAGTAACAC-TTTTTG  193

seq1  AAAACCATTAAACTATGTGTTCTGTCTGTGGCTGGTTTTTATTCAACCTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAACCATTAAACTATGTGTTCTGTCTGTGGCTGGTTTTTATTCAACTTT  243

seq1  CAATGATTTGTATGTACTCTGT-AAAAAGAGAATGAACACTATGCTGAGG  291
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAATGATTTGTATGTACTCTGTAAAAAAGAGAATGAACACTATGCTGAGG  293

seq1  AATATCTCAGGGGAATTAGTCACTTTATTATTAGAAGTCCTATGTAGAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCAGGGGAATTAGTCACTTTATTATTAGAAGTCCTATGTAGAAA  343

seq1  TGAGGAAAGTTGGTCTGCTTCAGTCCCATTTCAAATGCCTCTATTCACAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAGTTGGTCTGCTTCAGTCCCATTTCAAATGCCTCTATTCACAG  393

seq1  AAGCTTGCTGTGGTAGTTTCAGTATACTTAGACCATAGGGAGTGGTACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTGTGGTAGTTTCAGTATACTTAGACCATAGGGAGTGGTACAG  443

seq1  TTAGGAGGTGTAGCCATGTTGGAGGAAGTGTGTCACTGTTGGGGTGGGCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGTGTAGCCATGTTGGAGGAAGTGTGTCACTGTTGGGGTGGGCT  493

seq1  TTGAAGCTCGGACCAGTGCAGAAGAGTCACTTTTTTTTTTCTGGATGTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTCGGACCAGTGCAGAAGAGTCACTTTTTTTTTTCTGGATGTTG  543

seq1  CAGATCAAGAGACAGAAGAACTCTCAGTTCCTCTTGTGCCAGGTCTGCCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAGAGACAGAAGAACTCTCAGTTCCTCTTGTGCCAGGTCTGCCT  593

seq1  GGATGCTGCCATGCTTCCCACCTTGATGATAATGGACTGAACCTCTAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGCCATGCTTCCCACCTTGATGATAATGGACTGAACCTCTAAAC  643

seq1  CTGTAATAATTTCCTTGGTCATGGTGTCTCTTCACAGCGATGGAATCCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAATTTCCTTGGTCATGGTGTCTCTTCACAGCGATGGAATCCCT  693

seq1  AACTAGCAGAGTGCTTCTAGAACTTACAGTCTGAGAATTTGTGGGTACCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCAGAGTGCTTCTAGAACTTACAGTCTGAGAATTTGTGGGTACCT  743

seq1  GTTATAAAACACCAAGACCAGGGCCAAAGATCTTGCAGTTCTCTTACTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAACACCAAGACCAGGGCCAAAGATCTTGCAGTTCTCTTACTTG  793

seq1  ATTTTCTGTCTCTCAATAAGAAAGAGATAAGAATCATTTTTCCTTCCTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTCTCTCAATAAGAAAGAGATAAGAATCATTTTTCCTTCCTCT  843

seq1  TTTTAGCTTATTTTGTCCCTGTCTAATTGGACATCAGTTTCTTCAGTAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTATTTTGTCCCTGTCTAATTGGACATCAGTTTCTTCAGTAGC  893

seq1  TCCCCCACAAACCCTTCCGGAATACTCCATCACTCTCTTATCCTGAGCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACAAACCCTTCCGGAATACTCCATCACTCTCTTATCCTGAGCAT  943

seq1  CCTTTTTCTGTACTGGAAGGATAAGAAAAAGCCTTCTGAAGCTCAAAGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTGTACTGGAAGGATAAGAAAAAGCCTTCTGAAGCTCAAAGAA  993

seq1  CACAGATGTTTTACTAGCTATATGAGTATCAGCATGACACTGGGGACATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGTTTTACTAGCTATATGAGTATCAGCATGACACTGGGGACATG  1043

seq1  GGTACCCCACCTCACACTCAAGTCTCAGTTTATGGAACTTTACCCAAAAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCCACCTCACACTCAAGTCTCAGTTTATGGAACTTTACCCAAAAC  1093

seq1  ATAATGAATTC  1102
      |||||||||||
seq2  ATAATGAATTC  1104