BAC Information

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BAC

Clone NameB6Ng01-163J19
Chromosome8 (Build37)
Map Location 6,400,781 - 6,529,517
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J19.bB6Ng01-163J19.g
ACCDH956154DH956155
length1,1181,028
definitionDH956154|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J19, 5' end.DH956155|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,400,781 - 6,401,901)(6,528,481 - 6,529,517)
sequence
gaattcaatctttttttttaaatttttaatatttttttattatgtatttt
cctcaattacatttccaatgctatcccaaaagtcccccataccctccccc
ccactaaaggcacttataataggatagtactaaaagagagcacgtggatc
catacactagactaactcgggaatgggatactaatgtgagtttctgtgaa
actcttctgcctagtgagtagcttccaagcctcttggcttgtcaagctga
ctcgaccagagtgcgtggcagtatatgataaccatggtttggttactgac
aactcttcttgaatgtcatcaaatgtctcagagtattatagtttgggcag
aaaatgttcgttacaccgtattgtatgaaactgtatgtatcagtcagttc
ttccttcctacatcaccctagttaggtgtctaagaccttatcttgcttga
tgtcataggcttcctttcccagactctagagtctgtccattttacagttc
atgtcttctagatgtttttggcacccggtagtgtctcctgtttctgggta
tgttaacataataaacttgacctctgcttcctttcaatggcacacttagc
taaatagaaaagggtattggcccttgcatacttgcttcacatcacaaaat
gtatcagtgaggttggtgtccaagcacttcctctgaggaccacctttcat
tataaacttatttttaaactcaatccacaataatttaaaaagaagaaatg
gagtagtgaaattaaaataccgaagggcaaatattagacttcctattaat
ttaaatgtttaattaccttcatttgtaccttatccaacttttataaaagc
agctgattaatcaccctgtcttacaagacaatatacccttagtgtttcca
gtttcatgaagtttctagggataaggttaaattcctgttatcagataaat
ttaagtcaaagatatcgaattttttgtgggaagatcatattaatgtgttt
attaaaattaataaatagctttgtttttacgacttaacccttccattatc
aacaaggataaaaaaggtatacaactctgtataatattcttactagcctg
aaaacagaatttaattga

gaattcatactcttcattttgaaaaatacattaaaagaaatagtattgac
taagttttttgaattctttaacttctatattattttgggctcataaagca
tcccagaaaaatatgttaactaaacaatgtgagaaataaaaatctaataa
ataaagaaccagaaaattaattttagaagacccacagaataaattataat
catcctctgaatgtcacatacagagggtgaaatattaacttcagacattt
tttgctaccatgaatcccatttttattaagttttcaatagtagaagaaag
tttcacattttattaagtcttcagataatattccatgtagcagtgtattt
cagtgagtatccgatagaggcacttgtaaacactctcactgcgcatacaa
agcagattaatttagtgttatttaaaaatatgacttgcttcagtactgct
tgcaaaagatacagttttcatttaccagaaattaagtttgtgatatggaa
taaagcataattacttcctagcatcattgtttacaatgtcctcttgagtg
atattccccatgacaggagggattccggagtgtatttggtatgtgtgagc
cccattagtggtttgttgctcatgtatcacaataaaggtccccagcgaag
ccatccagcacacctgacaatgggatagagtgtttcatggaacagttttc
ttgggtctttgacagacagtttttttttacacattgacaagtgtacaaat
ataagatcctataatgatattttatagtaaatgtaagaagtcatacagat
ggaaagaatcaagaaatgagaaattgtttgagttgcttgtcataacacaa
atttgtcacgtgaaacaaagcagattaacacaaccaaattgatgaggcaa
agtagactagagcaaacaccctgcttctatctggatcttactgagcattc
caacatctgcatagccactgaagtttcattaactctggatttaacaagat
gtttttgttggtgaatggtggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6400781_6401901
seq2: B6Ng01-163J19.b_46_1163

seq1  GAATTCAATCTTTTTTTTTAAATTTTTAATATTTTTTTATTATGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTTTTTTTTAAATTTTTAATATTTTTTTATTATGTATTTT  50

seq1  CCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCC  100

seq1  CCACTAAAGGCACTTATAATAGGATAGTACTAAAAGAGAGCACGTGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAGGCACTTATAATAGGATAGTACTAAAAGAGAGCACGTGGATC  150

seq1  CATACACTAGACTAACTCGGGAATGGGATACTAATGTGAGTTTCTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTAGACTAACTCGGGAATGGGATACTAATGTGAGTTTCTGTGAA  200

seq1  ACTCTTCTGCCTAGTGAGTAGCTTCCAAGCCTCTTGGCTTGTCAAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTGCCTAGTGAGTAGCTTCCAAGCCTCTTGGCTTGTCAAGCTGA  250

seq1  CTCGACCAGAGTGCGTGGCAGTATATGATAACCATGGTTTGGTTACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCAGAGTGCGTGGCAGTATATGATAACCATGGTTTGGTTACTGAC  300

seq1  AACTCTTCTTGAATGTCATCAAATGTCTCAGAGTATTATAGTTTGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTTGAATGTCATCAAATGTCTCAGAGTATTATAGTTTGGGCAG  350

seq1  AAAATGTTCGTTACACCGTATTGTATGAAACTGTATGTATCAGTCAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCGTTACACCGTATTGTATGAAACTGTATGTATCAGTCAGTTC  400

seq1  TTCCTTCCTACATCACCCTAGTTAGGTGTCTAAGACCTTATCTTGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTACATCACCCTAGTTAGGTGTCTAAGACCTTATCTTGCTTGA  450

seq1  TGTCATAGGCTTCCTTTCCCAGACTCTAGAGTCTGTCCATTTTACAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGGCTTCCTTTCCCAGACTCTAGAGTCTGTCCATTTTACAGTTC  500

seq1  ATGTCTTCTAGATGTTTTTGGCACCCGGTAGTGTCTCCTGTTTCTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTAGATGTTTTTGGCACCCGGTAGTGTCTCCTGTTTCTGGGTA  550

seq1  TGTTAACATAATAAACTTGACCTCTGCTTCCTTTCAATGGCACACTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACATAATAAACTTGACCTCTGCTTCCTTTCAATGGCACACTTAGC  600

seq1  TAAATAGAAAAGGGTATTGGCCCTTGCATACTTGCTTCACATCACAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAAGGGTATTGGCCCTTGCATACTTGCTTCACATCACAAAAT  650

seq1  GTATCAGTGAGGTTGGTGTCCAAGCACTTCCTCTGAGGACCACCTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTGAGGTTGGTGTCCAAGCACTTCCTCTGAGGACCACCTTTCAT  700

seq1  TATAAACTTATTTTTAAACTCAATCCACAATAATTTAAAAAGAAGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTATTTTTAAACTCAATCCACAATAATTTAAAAAGAAGAAATG  750

seq1  GAGTAGTGAAATTAAAATACCGAAGGGCAAATATTAGACTTCCTATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGAAATTAAAATACCGAAGGGCAAATATTAGACTTCCTATTAAT  800

seq1  TTAAATGTTTAATTACCTTCATTTGTACCTTATCCAACTTTTATAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTTAATTACCTTCATTTGTACCTTATCCAACTTTTATAAAAGC  850

seq1  AGCTGATTAATCACCCTGTCTTACAAGACAATATACCCTTAGTGTTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTAATCACCCTGTCTTACAAGACAATATACCCTTAGTGTTTCCA  900

seq1  GTTTCATGAAAGTTTCTAGGGATAAGGTTAAATTCCTGTTATCAGATTAA  950
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTCATG-AAGTTTCTAGGGATAAGGTTAAATTCCTGTTATCAGA-TAA  948

seq1  ATTTAAGTCAAAAGATATCGAAGTATTTGTGGGAAGATCAATATAAATGT  1000
      ||||||||| |||||||||||| | |||||||||||||| |||| |||||
seq2  ATTTAAGTC-AAAGATATCGAATTTTTTGTGGGAAGATC-ATATTAATGT  996

seq1  GTTTAATTAAAATTAATAAATAGCTTTGTTTTGACGACTTAACCCTTCCA  1050
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTT-ATTAAAATTAATAAATAGCTTTGTTTTTACGACTTAACCCTTCCA  1045

seq1  TTATCAACATAGATAAAAAA-GTATAACAAACTCTGTAATATATTC-TAC  1098
      |||||||||  ||||||||| |||||   |||||||||  |||||| |||
seq2  TTATCAACAAGGATAAAAAAGGTATA--CAACTCTGTATAATATTCTTAC  1093

seq1  TAGGCTGAAAACAGA--TTTATTGA  1121
      ||| |||||||||||  || |||||
seq2  TAGCCTGAAAACAGAATTTAATTGA  1118


seq1: chr8_6528481_6529517
seq2: B6Ng01-163J19.g_68_1095 (reverse)

seq1  CCACTCCACCACCACTATCAACAACAAAAACATCTTGTTAAAATCAGAGT  50
      |||| |||||||||   ||| |||||||||||||||||||||  ||||||
seq2  CCAC-CCACCACCA--TTCACCAACAAAAACATCTTGTTAAATCCAGAGT  47

seq1  TAATGGAAACTTCAGTGGCTATGCAGATGTTGGAATGCTCCAGGTAAGAT  100
      |||| |||||||||||||||||||||||||||||||||||   |||||||
seq2  TAAT-GAAACTTCAGTGGCTATGCAGATGTTGGAATGCTC--AGTAAGAT  94

seq1  CCAGATAGAAGCAGGGTGTTTGCTCTAGTCTACTTTGCCTCATCAATTTT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAGATAGAAGCAGGGTGTTTGCTCTAGTCTACTTTGCCTCATCAA-TTT  143

seq1  GGTTGTGTTAATCTGCTTTGTTTCACGTGACAAAATTTGTGTTATGACAA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTGTGTTAATCTGCTTTGTTTCACGTGAC-AAATTTGTGTTATGACAA  192

seq1  GCAACTCAAACAATTTCTCATTTCTTGATTCTTTCCATCTGTATGACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAAACAATTTCTCATTTCTTGATTCTTTCCATCTGTATGACTTC  242

seq1  TTACATTTACTATAAAATATCATTATAGGATCTTATATTTGTACACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTACTATAAAATATCATTATAGGATCTTATATTTGTACACTTGT  292

seq1  CAATGTGTAAAAAAAAAACTGTCTGTCAAAGACCCAAGAAAACTGTTCCA  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGT-AAAAAAAAACTGTCTGTCAAAGACCCAAGAAAACTGTTCCA  341

seq1  TGAAACACTCTATCCCATTGTCAGGTGTGCTGGATGGCTTCGCTGGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACTCTATCCCATTGTCAGGTGTGCTGGATGGCTTCGCTGGGGAC  391

seq1  CTTTATTGTGATACATGAGCAACAAACCACTAATGGGGCTCACACATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTGATACATGAGCAACAAACCACTAATGGGGCTCACACATACC  441

seq1  AAATACACTCCGGAATCCCTCCTGTCATGGGGAATATCACTCAAGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACTCCGGAATCCCTCCTGTCATGGGGAATATCACTCAAGAGGAC  491

seq1  ATTGTAAACAATGATGCTAGGAAGTAATTATGCTTTATTCCATATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAACAATGATGCTAGGAAGTAATTATGCTTTATTCCATATCACAA  541

seq1  ACTTAATTTCTGGTAAATGAAAACTGTATCTTTTGCAAGCAGTACTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTCTGGTAAATGAAAACTGTATCTTTTGCAAGCAGTACTGAAG  591

seq1  CAAGTCATATTTTTAAATAACACTAAATTAATCTGCTTTGTATGCGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATATTTTTAAATAACACTAAATTAATCTGCTTTGTATGCGCAGT  641

seq1  GAGAGTGTTTACAAGTGCCTCTATCGGATACTCACTGAAATACACTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTTTACAAGTGCCTCTATCGGATACTCACTGAAATACACTGCTA  691

seq1  CATGGAATATTATCTGAAGACTTAATAAAATGTGAAACTTTCTTCTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATATTATCTGAAGACTTAATAAAATGTGAAACTTTCTTCTACTA  741

seq1  TTGAAAACTTAATAAAAATGGGATTCATGGTAGCAAAAAATGTCTGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTTAATAAAAATGGGATTCATGGTAGCAAAAAATGTCTGAAGT  791

seq1  TAATATTTCACCCTCTGTATGTGACATTCAGAGGATGATTATAATTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCACCCTCTGTATGTGACATTCAGAGGATGATTATAATTTATT  841

seq1  CTGTGGGTCTTCTAAAATTAATTTTCTGGTTCTTTATTTATTAGATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTCTTCTAAAATTAATTTTCTGGTTCTTTATTTATTAGATTTTT  891

seq1  ATTTCTCACATTGTTTAGTTAACATATTTTTCTGGGATGCTTTATGAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCACATTGTTTAGTTAACATATTTTTCTGGGATGCTTTATGAGCC  941

seq1  CAAAATAATATAGAAGTTAAAGAATTCAAAAAACTTAGTCAATACTATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATATAGAAGTTAAAGAATTCAAAAAACTTAGTCAATACTATTT  991

seq1  CTTTTAATGTATTTTTCAAAATGAAGAGTATGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGTATTTTTCAAAATGAAGAGTATGAATTC  1028


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