BAC Information

Click to search

BAC

Clone NameB6Ng01-164N22
Chromosome8 (Build37)
Map Location 49,881,169 - 50,093,909
singlet/doubletdoublet
Overlap gene2900073C17Rik
Upstream geneLOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
Downstream geneLOC100039866, 4930555F03Rik, LOC100039919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N22.bB6Ng01-164N22.g
ACCDH957083DH957084
length1,1061,034
definitionDH957083|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N22, 5' end.DH957084|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,092,795 - 50,093,909)(49,881,169 - 49,882,198)
sequence
gaattcaagtggttagtgagggcttgtatggagtagcacccctttctcgg
gcagatagcatctatagctctgttactccaaccctagattgttaatgtgt
cttaagacttcccagacagcaatgtttatgctcttgaatggcggggtgtg
tctgttcgctggtttctttgaatacattttagaatcgatttcctctgaag
atacagcatgttaccaccgtagcacaggaaataattagatttggccacag
tgcttacacaggactgaccccaattcttcagtgactacaaacaaataaag
ttcagaatagtgacatatttcagaaaagtgatacgttaaaataaaataat
agctagttaaacaaggggatgattctggttgctgctgttttgtggtctaa
aatctccccttcctcctttctctgccatcctgtctctttcgttggatctg
ctctataatgcttcagagccggtgcctgcttgcagcaatattttgttttt
attaaatttcaaaccctgaatttacccaacagaacaaagaaaactgtttt
ggaactttgatcttatcaccaagtttccattctagaagggatagacgcac
tgtgggccaaattcagccgtcattctctaagaaagcatagtcatttgaat
tccggaggaattgggatatttttttgtgtgtaggagaagtagctaggcct
cagtttcaaataataagctgtgaacctgtatagcccaaagttaagtcctc
cgatgaactgtatatattaaatccaagcctccatcttcaaagggcctcta
gcagtagagggaacaccaagatgaaaaggcctgatgaagggaaataatta
aaacttaatggatgcttgttgtataagtaggttgcaaaggaaaaaaaatt
gatcattttaggtatttcacaggatttcttaaagagtttgttgtctcatt
agtaattatttggggtggttagcactcataggtgacccctaaagactgtg
gttcaagtctagtacccagctctccttctgtatgtggatgactattgatc
ctcatgggagaatagttactaaatccagaaactagagagagctgactctc
cagaaa
gaattcccggcacaggggagagtgcacaggataaaatgcaaggcaggagg
cagggtaccctcactggtgtcaacagaacgatgatgcatttgtagataaa
tgtgataaaatggtaacggactaagctccactttgtaaaacccagatttt
aatcatccaaacagggcaagcaatagttcctgagcgaactagctgcaagc
gtttagcccgtgagatgtaccacgtgcaatgtcaggacagggaaagagcc
cttctgttggggtggatgttccattgtgacatcttaactaacagaggact
catccgagaggatctcacagtcgcagatgtgcgcttaactggaaattgca
agaagaaaaaaaaaaagaaaattaagtagatgaatgggcttgaaaaaaag
gcaaaggagggatggagaggtgactcaagagcactggctgttcttccaga
agaccagggttcaagtcccagcatccacatcaggtggctcacaactattt
gtaactccagttccagggcatctgatgccctcaggtttctgagtatacct
gaacccatgtggtatatatatatatgatatatatacatatccatatgtct
gtatatatacatgtgtatatatgtatacatagacatatacatatgcatat
atatatatatatgctcacataagaacacacacatacgtagaaataaaaat
ggattatcaaggagagaaaatgcaaagaagtggggaaggaaacattttct
gggagccaaggagatccctcaaaatagttcacacaatgagctggtaccag
acaggaaataaggatggttttatatcgagggaggatttgaatgctacctg
ggaaaatttggactcaatcttttttgcaaatgaatgccccaatttcaagc
acttatttttacatatgagacatcagtcaagctgaaatattcctcatcat
ctaagttcacagtactctaatcacaaatgaaaatcctgctcaataaaata
actgattgcaccacattaacttcttaacatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50092795_50093909
seq2: B6Ng01-164N22.b_47_1152 (reverse)

seq1  TTTCTGGGGAGGTCAGCTCTTCTCTAGTTTTCTTGGATTTAGTGACTTTT  50
      ||||||| || |||||||| ||||||||||   |||||||||| || | |
seq2  TTTCTGGAGA-GTCAGCTC-TCTCTAGTTT--CTGGATTTAGTAAC-TAT  45

seq1  TCTTCCATGGAGTATCAAATAGTCATCAACCATAACAGAAGAGAGAGCTG  100
      ||| |||| ||| ||| |||||||||| | ||| ||||||| ||||||||
seq2  TCTCCCAT-GAGGATC-AATAGTCATCCA-CAT-ACAGAAG-GAGAGCTG  90

seq1  GGTACTTAGCCTTGACCCACGGTCTTTTAGGGGTCACCTATGAGTGCTAA  150
      ||||| ||| ||||| |||| ||| |||||||||||||||||||||||||
seq2  GGTAC-TAGACTTGAACCACAGTC-TTTAGGGGTCACCTATGAGTGCTAA  138

seq1  CCACCCCAAATTAATTACTTATGAGACACAAAACTCTTTAGAAATTCCTT  200
      |||||||||| |||||||| ||||||||  ||||||||||  || ||| |
seq2  CCACCCCAAA-TAATTACTAATGAGACAACAAACTCTTTAAGAAATCC-T  186

seq1  GTG-AATACCTAAAATGATC-ATTTTTTTTCCTTTGC-ACCTACTTATAC  247
      ||| |||||||||||||||| |||||||||||||||| ||||||||||||
seq2  GTGAAATACCTAAAATGATCAATTTTTTTTCCTTTGCAACCTACTTATAC  236

seq1  AACAAGCATCCATTAAGTTTTAATTATTTCCCTTCATCAGGCC-TTTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAAGCATCCATTAAGTTTTAATTATTTCCCTTCATCAGGCCTTTTCAT  286

seq1  CTTGGTGTTCCCTCTACTGCTAGAGG-CCTTTGAAGATGGAGGCTTGGAT  345
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTGGTGTTCCCTCTACTGCTAGAGGCCCTTTGAAGATGGAGGCTTGGAT  336

seq1  TTAATATATACAGTTCATCGGAGGACTTAACTTTGGGCTATACAGGTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATACAGTTCATCGGAGGACTTAACTTTGGGCTATACAGGTTCA  386

seq1  CAGCTTATTATTTGAAACTGAGGCCTAGCTACTTCTCCTACACACAAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATTATTTGAAACTGAGGCCTAGCTACTTCTCCTACACACAAAAA  436

seq1  AATATCCCAATTCCTCCGGAATTCAAATGACTATGCTTTCTTAGAGAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCAATTCCTCCGGAATTCAAATGACTATGCTTTCTTAGAGAATG  486

seq1  ACGGCTGAATTTGGCCCACAGTGCGTCTATCCCTTCTAGAATGGAAACTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGAATTTGGCCCACAGTGCGTCTATCCCTTCTAGAATGGAAACTT  536

seq1  GGTGATAAGATCAAAGTTCCAAAACAGTTTTCTTTGTTCTGTTGGGTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAAGATCAAAGTTCCAAAACAGTTTTCTTTGTTCTGTTGGGTAAA  586

seq1  TTCAGGGTTTGAAATTTAATAAAAACAAAATATTGCTGCAAGCAGGCACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTTGAAATTTAATAAAAACAAAATATTGCTGCAAGCAGGCACC  636

seq1  GGCTCTGAAGCATTATAGAGCAGATCCAACGAAAGAGACAGGATGGCAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAGCATTATAGAGCAGATCCAACGAAAGAGACAGGATGGCAGA  686

seq1  GAAAGGAGGAAGGGGAGATTTTAGACCACAAAACAGCAGCAACCAGAATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGAAGGGGAGATTTTAGACCACAAAACAGCAGCAACCAGAATC  736

seq1  ATCCCCTTGTTTAACTAGCTATTATTTTATTTTAACGTATCACTTTTCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTGTTTAACTAGCTATTATTTTATTTTAACGTATCACTTTTCTG  786

seq1  AAATATGTCACTATTCTGAACTTTATTTGTTTGTAGTCACTGAAGAATTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCACTATTCTGAACTTTATTTGTTTGTAGTCACTGAAGAATTG  836

seq1  GGGTCAGTCCTGTGTAAGCACTGTGGCCAAATCTAATTATTTCCTGTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTCCTGTGTAAGCACTGTGGCCAAATCTAATTATTTCCTGTGCT  886

seq1  ACGGTGGTAACATGCTGTATCTTCAGAGGAAATCGATTCTAAAATGTATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGTAACATGCTGTATCTTCAGAGGAAATCGATTCTAAAATGTATT  936

seq1  CAAAGAAACCAGCGAACAGACACACCCCGCCATTCAAGAGCATAAACATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACCAGCGAACAGACACACCCCGCCATTCAAGAGCATAAACATT  986

seq1  GCTGTCTGGGAAGTCTTAAGACACATTAACAATCTAGGGTTGGAGTAACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGGGAAGTCTTAAGACACATTAACAATCTAGGGTTGGAGTAACA  1036

seq1  GAGCTATAGATGCTATCTGCCCGAGAAAGGGGTGCTACTCCATACAAGCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATAGATGCTATCTGCCCGAGAAAGGGGTGCTACTCCATACAAGCC  1086

seq1  CTCACTAACCACTTGAATTC  1115
      ||||||||||||||||||||
seq2  CTCACTAACCACTTGAATTC  1106

seq1: chr8_49881169_49882198
seq2: B6Ng01-164N22.g_66_1099

seq1  GAATTCCCGGCACAGGGGAGAGTGCACAGGATAAAATGCAAGGCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGCACAGGGGAGAGTGCACAGGATAAAATGCAAGGCAGGAGG  50

seq1  CAGGGTACCCTCACTGGTGTCAACAGAACGATGATGCATTTGTAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACCCTCACTGGTGTCAACAGAACGATGATGCATTTGTAGATAAA  100

seq1  TGTGATAAAATGGTAACGGACTAAGCTCCACTTTGTAAAACCCAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAAATGGTAACGGACTAAGCTCCACTTTGTAAAACCCAGATTTT  150

seq1  AATCATCCAAACAGGGCAAGCAATAGTTCCTGAGCGAACTAGCTGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCCAAACAGGGCAAGCAATAGTTCCTGAGCGAACTAGCTGCAAGC  200

seq1  GTTTAGCCCGTGAGATGTACCACGTGCAATGTCAGGACAGGGAAAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCCGTGAGATGTACCACGTGCAATGTCAGGACAGGGAAAGAGCC  250

seq1  CTTCTGTTGGGGTGGATGTTCCATTGTGACATCTTAACTAACAGAGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGGGGTGGATGTTCCATTGTGACATCTTAACTAACAGAGGACT  300

seq1  CATCCGAGAGGATCTCACAGTCGCAGATGTGCGCTTAACTGGAAATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGAGAGGATCTCACAGTCGCAGATGTGCGCTTAACTGGAAATTGCA  350

seq1  AGAAGAAAAAAAAAAAGAAAATTAAGTAGATGAATGGGCTTGAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAAAAAAGAAAATTAAGTAGATGAATGGGCTTGAAAAAAAG  400

seq1  GCAAAGGAGGGATGGAGAGGTGACTCAAGAGCACTGGCTGTTCTTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGGGATGGAGAGGTGACTCAAGAGCACTGGCTGTTCTTCCAGA  450

seq1  AGACCAGGGTTCAAGTCCCAGCATCCACATCAGGTGGCTCACAACTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGGTTCAAGTCCCAGCATCCACATCAGGTGGCTCACAACTATTT  500

seq1  GTAACTCCAGTTCCAGGGCATCTGATGCCCTCAGGTTTCTGAGTATACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCAGTTCCAGGGCATCTGATGCCCTCAGGTTTCTGAGTATACCT  550

seq1  GAACCCATGTGGTATATATATATATGATATATATACATATCCATATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATGTGGTATATATATATATGATATATATACATATCCATATGTCT  600

seq1  GTATATATACATGTGTATATATGTATACATAGACATATACATATGCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATACATGTGTATATATGTATACATAGACATATACATATGCATAT  650

seq1  ATATATATATATGCTCACATAAGAACACACACATACGTAGAAATAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGCTCACATAAGAACACACACATACGTAGAAATAAAAAT  700

seq1  GGATTATCAAGGAGAGAAAATGCAAAGAAGT-GGGAAGGAAACATTTTCT  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGATTATCAAGGAGAGAAAATGCAAAGAAGTGGGGAAGGAAACATTTTCT  750

seq1  GGGAGCCAAGGAGAT-CCTCAAAATAGTTCACACAATGAGCTGGTACCAG  798
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAGGAGATCCCTCAAAATAGTTCACACAATGAGCTGGTACCAG  800

seq1  ACAGGAAATAAGGATGGTTTCATATCGAGGGAGGATTTGAATGCTACCTG  848
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGGAAATAAGGATGGTTTTATATCGAGGGAGGATTTGAATGCTACCTG  850

seq1  GGAAAATTTGGACTCAATC-TTTATGCAAATGAATGCCCCAAATTTCAAG  897
      ||||||||||||||||||| ||| |||||||||||||||| |||||||||
seq2  GGAAAATTTGGACTCAATCTTTTTTGCAAATGAATGCCCC-AATTTCAAG  899

seq1  CACTTA-TTCTACAAATGAGACATCAGTCAAGCTGAAATATTCCTCATCA  946
      |||||| || |||| |||||||||||||||||||||||||||||||||||
seq2  CACTTATTTTTACATATGAGACATCAGTCAAGCTGAAATATTCCTCATCA  949

seq1  TCTAAGTTCAACAGTACTCTAATCACAAAATGAAATCCTGCTC-ATAAAA  995
      ||||||||| |||||||||||||||||||   ||||||||||| ||||||
seq2  TCTAAGTTC-ACAGTACTCTAATCACAAATGAAAATCCTGCTCAATAAAA  998

seq1  TAACTGATAGCCACACATTAAC-TCCTAACATCCTT  1030
      |||||||| ||  ||||||||| || ||||||||||
seq2  TAACTGATTGCACCACATTAACTTCTTAACATCCTT  1034