BAC Information

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BAC

Clone NameB6Ng01-167K20
Chromosome8 (Build37)
Map Location 54,661,632 - 54,788,553
singlet/doubletdoublet
Overlap geneNeil3, LOC100040107
Upstream geneLOC676688, Aga
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K20.bB6Ng01-167K20.g
ACCDH959107DH959108
length1,1121,090
definitionDH959107|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K20, 5' end.DH959108|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,787,434 - 54,788,553)(54,661,632 - 54,662,735)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccatcttcttgagttctttatatatattggatattagtcct
cagcttttagttaattaattctaaagttttcttagtgccaaattcagggc
tagatgttggtgggcaagccattaaaatacatggccttttgcctgatatc
tgcaaaatgagaatttatgagtagataaactgcaatgcataattcactta
taaaaattaatctaaatttgaatttcatatttacagtaaacagacatttt
aatatacattctcatagtgtatctgttttgacctacatttttcttaaaat
cttgttaaaaataactctacaaaaatggcaatggaaatattttcaatcaa
ttcatccatatcagtaattgctataagaaaaatgagttgacatgtcaagt
tgaaaactggaggttgcaggttataccaacttcctgtctgtcacagtcta
attttgttagatgctactaacataaaaaaaaattacttgttccttcattt
tcgacttaggcatcaataaggggttaaggaagctttgtgttaagactccc
aaaagaaagactggagaaatctctttagctcacaatttaatgacaggctt
atacagattccctgggaatgccttttagacatcattttgcctctgaaaat
acatttgattcttaaaatgcatcaaattagtctatatggtcaactcttca
tccttcccatccacttgtgattcattctataattttctatgctaattggc
tgcatacatacaattatgtaacatatgacaaatctagaaataaaagcata
aatcccttaaaggatttcattctcctttaaaggagaactcccaagtggct
gtccaatactaaatggtcagccctgcagtcatatacatgtggaaatattt
taggggctaagtggattgtatttacgtatgtaggaatgtttatatatgtt
tgcaacaacagtaaagaaaaaagtctttgagtctgagaagagaataaaga
gtacatgtagtggggagggagaaaaggagaaaagtattgtggtatatatt
tcaattttaaaa
gaattccagaatagtcagggctacaaacaaaaacctgtatcaaaaaacta
aaataaatgataggtaggtaggtaggtaggtaggtaggtagatagataga
tagatagatagatagatagatagatagatagatagatagatgataggtaa
gatgaagatacctgaagagaaaacaagcatttttatctacctggtccaca
tattatgatatagatttattatcctatcatatctatcatgtgtctattat
atatagatatataatcatctatccatctcatttttaataaaactatatga
aaatgaaaactaatattatgtgaagaaaatgaaaacacaaattaaataaa
agttctttattgaaaatttttcatgcaagctttgttaacttaccttcaaa
acttcaacaccccataaaagtaattacattcctttatgagagttttattt
cataagttcataaaatggaaagaaagtttgatagaaaccaaggtcccttc
taaccatacccaccatagccataggattaatgtggaatctttgatgatat
cacagtgtacccatttcagttttaagagtgataacttggttgagccaggt
gacaccatcccagctatccaacctattaagaaaggaaagaaataggatca
taaattgaaggtcaatatggacaactaaatgatatatttgtctcaaataa
aatatagagggaggttagctaagtggcatagtatttgccaagcatgcatg
aggccttgtctaagttcaatctaaaataatagaaagaaatacatttgtgt
cttttcacttctgtttttctgaataactacaatacttttcttttttctat
atatgcatttcaactgtttcatatagttgtatgcctttattagaatattt
tcatagtgaaattaggtagaaagagaaattttaagtaaaatatgtacaca
ccccccctacatcccaccctcccttggagcataataagtcattaagggaa
atacccgagaaggacaaccatttaagtttaataaatttaaataaaaggtt
gactggaacacacatatataggaagaaacattactatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54787434_54788553
seq2: B6Ng01-167K20.b_46_1157 (reverse)

seq1  TTTTAAAATTTTGAAATTATATA-CAC-ATACTTTTCTTCCTTTTTCTCC  48
      ||||||||  |||||| |||||| ||| ||||||||||  | ||||||||
seq2  TTTTAAAA--TTGAAA-TATATACCACAATACTTTTCT--CCTTTTCTCC  45

seq1  CTCCCACCCTACCATGTACCTCTTTTATTCTC-TCTCAGACTCATAGACT  97
      ||||| | ||| |||||| ||| ||||||||| ||||||||||| |||||
seq2  CTCCC-CACTA-CATGTA-CTC-TTTATTCTCTTCTCAGACTCAAAGACT  91

seq1  TTTTTCTTTTACTTGTTGTTGCAAACATATATAAACATTCCTACATACGT  147
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTC-TTTAC-TGTTGTTGCAAACATATATAAACATTCCTACATACGT  139

seq1  AAATACAATCCACTTAGCCCCTAAAATATTTCCACATGTATATGACTGCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATCCACTTAGCCCCTAAAATATTTCCACATGTATATGACTGCA  189

seq1  GGGCTGACCATTTAGTATTGGACAGCCACTTGGGAGTTCTCCTTTAAAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGACCATTTAGTATTGGACAGCCACTTGGGAGTTCTCCTTTAAAGG  239

seq1  AGAATGAAATCCTTTAAGGGATTTATGCTTTTATTTCTAGATTTGTCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAATCCTTTAAGGGATTTATGCTTTTATTTCTAGATTTGTCATA  289

seq1  TGTTACATAATTGTATGTATGCAGCCAATTAGCATAGAAAATTATAGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATAATTGTATGTATGCAGCCAATTAGCATAGAAAATTATAGAAT  339

seq1  GAATCACAAGTGGATGGGAAGGATGAAGAGTTGACCATATAGACTAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACAAGTGGATGGGAAGGATGAAGAGTTGACCATATAGACTAATTT  389

seq1  GATGCATTTTAAGAATCAAATGTATTTTCAGAGGCAAAATGATGTCTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTTAAGAATCAAATGTATTTTCAGAGGCAAAATGATGTCTAAA  439

seq1  AGGCATTCCCAGGGAATCTGTATAAGCCTGTCATTAAATTGTGAGCTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCCCAGGGAATCTGTATAAGCCTGTCATTAAATTGTGAGCTAAA  489

seq1  GAGATTTCTCCAGTCTTTCTTTTGGGAGTCTTAACACAAAGCTTCCTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTCCAGTCTTTCTTTTGGGAGTCTTAACACAAAGCTTCCTTAA  539

seq1  CCCCTTATTGATGCCTAAGTCGAAAATGAAGGAACAAGTAATTTTTTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTATTGATGCCTAAGTCGAAAATGAAGGAACAAGTAATTTTTTTTT  589

seq1  ATGTTAGTAGCATCTAACAAAATTAGACTGTGACAGACAGGAAGTTGGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTAGCATCTAACAAAATTAGACTGTGACAGACAGGAAGTTGGTA  639

seq1  TAACCTGCAACCTCCAGTTTTCAACTTGACATGTCAACTCATTTTTCTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGCAACCTCCAGTTTTCAACTTGACATGTCAACTCATTTTTCTTA  689

seq1  TAGCAATTACTGATATGGATGAATTGATTGAAAATATTTCCATTGCCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTACTGATATGGATGAATTGATTGAAAATATTTCCATTGCCATT  739

seq1  TTTGTAGAGTTATTTTTAACAAGATTTTAAGAAAAATGTAGGTCAAAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGTTATTTTTAACAAGATTTTAAGAAAAATGTAGGTCAAAACA  789

seq1  GATACACTATGAGAATGTATATTAAAATGTCTGTTTACTGTAAATATGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTATGAGAATGTATATTAAAATGTCTGTTTACTGTAAATATGAA  839

seq1  ATTCAAATTTAGATTAATTTTTATAAGTGAATTATGCATTGCAGTTTATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTTAGATTAATTTTTATAAGTGAATTATGCATTGCAGTTTATC  889

seq1  TACTCATAAATTCTCATTTTGCAGATATCAGGCAAAAGGCCATGTATTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATAAATTCTCATTTTGCAGATATCAGGCAAAAGGCCATGTATTTT  939

seq1  AATGGCTTGCCCACCAACATCTAGCCCTGAATTTGGCACTAAGAAAACTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTGCCCACCAACATCTAGCCCTGAATTTGGCACTAAGAAAACTT  989

seq1  TAGAATTAATTAACTAAAAGCTGAGGACTAATATCCAATATATATAAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAATTAACTAAAAGCTGAGGACTAATATCCAATATATATAAAGA  1039

seq1  ACTCAAGAAGATGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGATGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  1089

seq1  GCTCAGAGCTAAACAAAGAATTC  1120
      |||||||||||||||||||||||
seq2  GCTCAGAGCTAAACAAAGAATTC  1112

seq1: chr8_54661632_54662735
seq2: B6Ng01-167K20.g_66_1155

seq1  GAATTCCAGAATAGTCAGGGCTACAAACAAAAACCTGTATCAAAAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATAGTCAGGGCTACAAACAAAAACCTGTATCAAAAAACTA  50

seq1  AAATAAATGATAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGATAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGATAGA  100

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGGTAA  150

seq1  GATGAAGATACCTGAAGAGAAAACAAGCATTTTTATCTACCTGGTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGATACCTGAAGAGAAAACAAGCATTTTTATCTACCTGGTCCACA  200

seq1  TATTATGATATAGATTTATTATCCTATCATATCTATCATGTGTCTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATATAGATTTATTATCCTATCATATCTATCATGTGTCTATTAT  250

seq1  ATATAGATATATAATCATCTATCCATCTCATTTTTAATAAAACTATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATATATAATCATCTATCCATCTCATTTTTAATAAAACTATATGA  300

seq1  AAATGAAAACTAATATTATGTGAAGAAAATGAAAACACAAATTAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACTAATATTATGTGAAGAAAATGAAAACACAAATTAAATAAA  350

seq1  AGTTCTTTATTGAAAATTTTTCATGCAAGCTTTGTTAACTTACCTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTATTGAAAATTTTTCATGCAAGCTTTGTTAACTTACCTTCAAA  400

seq1  ACTTCAACACCCCATAAAAGTAATTACATTCCTTTATGAGAGTTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACACCCCATAAAAGTAATTACATTCCTTTATGAGAGTTTTATTT  450

seq1  CATAAGTTCATAAAATGGAAAGAAAGTTTGATAGAAACCAAGGTCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTCATAAAATGGAAAGAAAGTTTGATAGAAACCAAGGTCCCTTC  500

seq1  TAACCATACCCACCATAGCCATAGGATTAATGTGGAATCTTTGATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATACCCACCATAGCCATAGGATTAATGTGGAATCTTTGATGATAT  550

seq1  CACAGTGTACCCATTTCAGTTTTAAGAGTGATAACTTGGTTGAGCCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTACCCATTTCAGTTTTAAGAGTGATAACTTGGTTGAGCCAGGT  600

seq1  GACACCATCCCAGCTATCCAACCTATTAAGAAAGGAAAGAAATAGGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATCCCAGCTATCCAACCTATTAAGAAAGGAAAGAAATAGGATCA  650

seq1  TAAATTGAAGGTCAATATGGACAACTAAATGATATATTTGTCTCAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAGGTCAATATGGACAACTAAATGATATATTTGTCTCAAATAA  700

seq1  AATATAGAGGGAGGTTAGCTAAGTGGCATAGTATTTGCCAAGCATGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGGGAGGTTAGCTAAGTGGCATAGTATTTGCCAAGCATGCATG  750

seq1  AGGCCTTGTCTAAGTTCAATCTAAAATAATAG-AAGAAATACATTTGTGT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGCCTTGTCTAAGTTCAATCTAAAATAATAGAAAGAAATACATTTGTGT  800

seq1  C-TTTCACTTCTGTTTTTCTGAATAACTACAATACTTT--CTTTTTCTAT  846
      | ||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CTTTTCACTTCTGTTTTTCTGAATAACTACAATACTTTTCTTTTTTCTAT  850

seq1  ATATGCATTTCAACTGTTTCAATATAGTTGTATTGCTTTTATTAGAATAT  896
      |||||||||||||||||||| ||||||||||| ||| |||||||||||||
seq2  ATATGCATTTCAACTGTTTC-ATATAGTTGTA-TGCCTTTATTAGAATAT  898

seq1  TTTCATAAGTGAAAATAAGGTAGAAAAGAGAAATTTTAAGTAAAAATATG  946
      |||||| |||| |||| |||||| ||||||||||||||||| ||||||||
seq2  TTTCAT-AGTG-AAATTAGGTAG-AAAGAGAAATTTTAAGT-AAAATATG  944

seq1  TTACACACACACACTACATACACACACACCCTTGGAGCATTAATAAGGTC  996
       ||||||| | | |||||| | ||| | ||||||||||| |||||| |||
seq2  -TACACACCCCCCCTACAT-CCCACCCTCCCTTGGAGCA-TAATAA-GTC  990

seq1  ATTAAGGGAGATAGCCAGAGAATGTACAAACCATTTAAATTTAAATAAAT  1046
      ||||||||| ||| || ||||| | || |||||||||| ||| |||||||
seq2  ATTAAGGGAAATA-CCCGAGAA-GGAC-AACCATTTAAGTTT-AATAAAT  1036

seq1  TTAAAATAAAAAGTATGACTGAAACACACATATCATAGGAAAGAAACATT  1096
      || |||||||| || |||||| ||||||||||| ||||| ||||||||||
seq2  TT-AAATAAAAGGT-TGACTGGAACACACATAT-ATAGG-AAGAAACATT  1082

seq1  ACTATTTC  1104
      ||||||||
seq2  ACTATTTC  1090