BAC Information

Click to search

BAC

Clone NameB6Ng01-169B12
Chromosome8 (Build37)
Map Location 126,764,256 - 126,951,456
singlet/doubletdoublet
Overlap geneGalnt2, Pgbd5
Upstream gene1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
Downstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B12.bB6Ng01-169B12.g
ACCDH960161DH960162
length1,131816
definitionDH960161|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B12, 5' end.DH960162|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,764,256 - 126,765,391)(126,950,903 - 126,951,456)
sequence
gaattctccattccgccgagatgccgagcctgtggtgatgctttggggcc
ctagcctggcttatagagacttggggggcttgggggagacctactccagt
ttctcatgatcaaccataagcgaggatcagctctgaatggaccaatcagg
gcgtcagggctctgctccttgtcatctatgagagcccagtttccccctgg
gcctctctctctctctctctgacagacgaggctggcctctgtctgtcccg
ttcccagactcctgataaatagcctggtacttcttatttcagagagcagc
tgagagtatgcacccattcagaaaacatgctggcgtgttcaccacggaag
aggtccccttgggtgccaggttgcggaagggcaatcgtgtcttacactga
gatttcagttaaaaggtagctagtgtattttgtggtgtccctttggtggg
tgagaaacacttagtgaggttttatctgcggtgctttgaagtcctagaag
atcctgacaggaaagcactcaccgtttgtgctgattgatttctgcctttg
ataccctgctaggagcacttggtggctgagtgtgaatcaaggtaggcacg
ggtcactgtcacctaagctgctgtcagcagctcacagccctttacctaac
aagactgctgtggccattcaatggcggtttcttgattgccctgtctgtct
gcgtcagcaccctgccttatcatgggcaggaagatgaagtggaagaccat
taataaatgtatattactcccctttgttcctccaacaggatgtgattgca
aaactcccgcatattacttcgtatttgtaactggcagttttggcaaggac
acgatactgcatatttcctgtaggtgtaatttctggtgacttcaatttat
atcagccttgacactgtaattcctgaaaggcttccgagccccgccatctg
tcttgcttctctgtaggctgggagtttttcctttgtacgcaataccagac
tgttcctccaggtcacacagtagcaaacctcaggctgttttaaagtctca
gcagctgccttatgacagggcctgggaatcagcactgggcagccgttttc
atcgctcccgaacgcccaggccgattccagg
gaattcaccttaatagcagctgggatgcagagaaagaacggagatggggg
gacagggacaagaaatgctcctcggaagcacgcctgcaatgacctgcctt
ctgtcaggctaccttcagacttcatatttccaccttcctagagagccgcc
agcttgtgatccatcagtgggtgtcttagggttttactgctgtgaacaga
caccatgaccaaggcaactcttataaggacaacatttaattggggccccg
cttacaggttcagaggttcaatccattatcatcaaggcaggaacatggca
gtgtccaggcaggcatggtacaagaggagctgagagttctacatcttcat
ctgaaggctgctagcagactactggcttccacacccctactccaacaagg
tcacatcttctaatagtaccactccctgggctgagcatattgcaaaccat
cacagtgggtgaaggctcttgccttggggaccaaagcttttgggggcatt
gttgtactttcatcccattgcaataagacactgactaaaagctgcttggg
ggaggaaagtgtttacttcatcttaaacttccatgttctatcattgaggg
aggatgggaaagtcatggaaggcagaaaccatgaaagaaggctgtcagga
tgatgtcccccacacatgttcacggcctgatctaggctgcgtgtcagccg
aagtccctccccagggactctagatgctgtcaagttgacagtggaaacta
atcaggacagatgctcagctccaaagtgattaacatcacctttcaggtgg
gtttgggggttatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126764256_126765391
seq2: B6Ng01-169B12.b_48_1178

seq1  GAATTCTCCATTCCGCCGAGATGCCGAGCCTGTGGTGATGCTTTGGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCCGCCGAGATGCCGAGCCTGTGGTGATGCTTTGGGGCC  50

seq1  CTAGCCTGGCTTATAGAGACTTGGGGGGCTTGGGGGAGACCTACTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGCTTATAGAGACTTGGGGGGCTTGGGGGAGACCTACTCCAGT  100

seq1  TTCTCATGATCAACCATAAGCGAGGATCAGCTCTGAATGGACCAATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGATCAACCATAAGCGAGGATCAGCTCTGAATGGACCAATCAGG  150

seq1  GCGTCAGGGCTCTGCTCCTTGTCATCTATGAGAGCCCAGTTTCCCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGGGCTCTGCTCCTTGTCATCTATGAGAGCCCAGTTTCCCCCTGG  200

seq1  GCCTCTCTCTCTCTCTCTCTGACAGACGAGGCTGGCCTCTGTCTGTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTCTCTCTCTCTCTGACAGACGAGGCTGGCCTCTGTCTGTCCCG  250

seq1  TTCCCAGACTCCTGATAAATAGCCTGGTACTTCTTATTTCAGAGAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGACTCCTGATAAATAGCCTGGTACTTCTTATTTCAGAGAGCAGC  300

seq1  TGAGAGTATGCACCCATTCAGAAAACATGCTGGCGTGTTCACCACGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTATGCACCCATTCAGAAAACATGCTGGCGTGTTCACCACGGAAG  350

seq1  AGGTCCCCTTGGGTGCCAGGTTGCGGAAGGGCAATCGTGTCTTACACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCCTTGGGTGCCAGGTTGCGGAAGGGCAATCGTGTCTTACACTGA  400

seq1  GATTTCAGTTAAAAGGTAGCTAGTGTATTTTGTGGTGTCCCTTTGGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTAAAAGGTAGCTAGTGTATTTTGTGGTGTCCCTTTGGTGGG  450

seq1  TGAGAAACACTTAGTGAGGTTTTATCTGCGGTGCTTTGAAGTCCTAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACACTTAGTGAGGTTTTATCTGCGGTGCTTTGAAGTCCTAGAAG  500

seq1  ATCCTGACAGGAAAGCACTCACCGTTTGTGCTGATTGATTTCTGCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGGAAAGCACTCACCGTTTGTGCTGATTGATTTCTGCCTTTG  550

seq1  ATACCCTGCTAGGAGCACTTGGTGGCTGAGTGTGAATCAAGGTAGGCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGCTAGGAGCACTTGGTGGCTGAGTGTGAATCAAGGTAGGCACG  600

seq1  GGTCACTGTCACCTAAGCTGCTGTCAGCAGCTCACAGCCCTTTACCTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGTCACCTAAGCTGCTGTCAGCAGCTCACAGCCCTTTACCTAAC  650

seq1  AAGACTGCTGTGGCCATTCAATGGCGGTTTCTTGATTGCCCTGTCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTGTGGCCATTCAATGGCGGTTTCTTGATTGCCCTGTCTGTCT  700

seq1  GCGTCAGCACCCTGCCTTATCATGGGCAGGAAGATGAAGTGGAAGACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGCACCCTGCCTTATCATGGGCAGGAAGATGAAGTGGAAGACCAT  750

seq1  TAATAAATGTATATTACTCCCCTTTGTTCCTCCAACAGGATGTGATTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTATATTACTCCCCTTTGTTCCTCCAACAGGATGTGATTGCA  800

seq1  AAACTCCCGCATATTACTTCGTATTTGTAACTGGCAGTTTTGGCAAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCGCATATTACTTCGTATTTGTAACTGGCAGTTTTGGCAAGGAC  850

seq1  ACGATACTGCATATTTCCTGTAAGGTGTAATTCCTGGTGACTTCAATTTA  900
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  ACGATACTGCATATTTCCTGT-AGGTGTAATTTCTGGTGACTTCAATTTA  899

seq1  TATCAGCCTTGACACTGTAATTCCTGAAAGGC-TCCGAGCCCCGCCATCT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATCAGCCTTGACACTGTAATTCCTGAAAGGCTTCCGAGCCCCGCCATCT  949

seq1  GTCTTGCTTCTCTGTAGGCTGGGAAGTTTTTCCTTTGTACGCATTACCAG  999
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GTCTTGCTTCTCTGTAGGCTGGG-AGTTTTTCCTTTGTACGCAATACCAG  998

seq1  ACTG-TCCCCCAGGTCACACAGTAGCAAA-CTCAGGCTGTTTTAAGGTCT  1047
      |||| ||| |||||||||||||||||||| ||||||||||||||| ||||
seq2  ACTGTTCCTCCAGGTCACACAGTAGCAAACCTCAGGCTGTTTTAAAGTCT  1048

seq1  CAGCAGCTGCC-TATGACAAGGGCCTGGGAAATCCAGCACTGGGCAGCCC  1096
      ||||||||||| |||||| ||||||||||||   ||||||||||||| ||
seq2  CAGCAGCTGCCTTATGAC-AGGGCCTGGGAA--TCAGCACTGGGCAG-CC  1094

seq1  GTTTTCAGTCCGCCCCGGACGCCCAGGCACAGATTCCAGG  1136
      ||||||| ||   |||| |||||||||  | |||||||||
seq2  GTTTTCA-TCGCTCCCGAACGCCCAGG--CCGATTCCAGG  1131

seq1: chr8_126950903_126951456
seq2: B6Ng01-169B12.g_333_886 (reverse)

seq1  CACATAACCCCCAAACCCACCTGAAAGGTGATGTTAATCACTTTGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACCCCCAAACCCACCTGAAAGGTGATGTTAATCACTTTGGAGCT  50

seq1  GAGCATCTGTCCTGATTAGTTTCCACTGTCAACTTGACAGCATCTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTGTCCTGATTAGTTTCCACTGTCAACTTGACAGCATCTAGAGT  100

seq1  CCCTGGGGAGGGACTTCGGCTGACACGCAGCCTAGATCAGGCCGTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGAGGGACTTCGGCTGACACGCAGCCTAGATCAGGCCGTGAACA  150

seq1  TGTGTGGGGGACATCATCCTGACAGCCTTCTTTCATGGTTTCTGCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGGACATCATCCTGACAGCCTTCTTTCATGGTTTCTGCCTTCC  200

seq1  ATGACTTTCCCATCCTCCCTCAATGATAGAACATGGAAGTTTAAGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCCCATCCTCCCTCAATGATAGAACATGGAAGTTTAAGATGAA  250

seq1  GTAAACACTTTCCTCCCCCAAGCAGCTTTTAGTCAGTGTCTTATTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACTTTCCTCCCCCAAGCAGCTTTTAGTCAGTGTCTTATTGCAAT  300

seq1  GGGATGAAAGTACAACAATGCCCCCAAAAGCTTTGGTCCCCAAGGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAAGTACAACAATGCCCCCAAAAGCTTTGGTCCCCAAGGCAAGA  350

seq1  GCCTTCACCCACTGTGATGGTTTGCAATATGCTCAGCCCAGGGAGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACCCACTGTGATGGTTTGCAATATGCTCAGCCCAGGGAGTGGTA  400

seq1  CTATTAGAAGATGTGACCTTGTTGGAGTAGGGGTGTGGAAGCCAGTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGAAGATGTGACCTTGTTGGAGTAGGGGTGTGGAAGCCAGTAGTC  450

seq1  TGCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCTTGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCTTGTACC  500

seq1  ATGCCTGCCTGGACACTGCCATGTTCCTGCCTTGATGATAATGGATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTGGACACTGCCATGTTCCTGCCTTGATGATAATGGATTGAA  550

seq1  CCTC  554
      ||||
seq2  CCTC  554