BAC Information

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BAC

Clone NameB6Ng01-170A20
Chromosome8 (Build37)X (Build37)
Map Location 66,164,702 - 66,165,14978,719,084 - 78,719,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989, Cpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170A20.bB6Ng01-170A20.g
ACCDH960864DH960865
length907973
definitionDH960864|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A20, 5' end.DH960865|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,164,702 - 66,165,149)(78,719,084 - 78,719,636)
sequence
gaattctaggtctgatagaacactgcactaaacccatctggtcttgggtt
tttgttgatgttgttgttgttgtttttttttttttttttttttttgagac
tattgatgactgcttctatttctttagaagaaatgggaatatttagattg
ttaatcttgtcttgattcaactttggtagctattatatgtctatgaagtt
gttcatttcttccaggttttctagttctttttgttttttttgttttttgg
tttttttgagtatagccttttgtaataggatctgatgatgttttagattt
cctcaggttctattgttatgtctcctttttcatttctgattttgttaatt
agaatactgtccatatgacctccagttagtctcacaaagggtttatctat
cttgttgatttcctcaaagaaccagctcctcgattggttgattctttgaa
tagttctttttgtttccacttggttgatttctgccctaagtttgattatt
tcctgctgtctactcctcttgggtgaatttgcttcctttagttctagagc
ttctaggtgtgctgttaggctgctaatatatgctctttctggtttctttt
tagagccactcagggctataacttttcctcgtaggactgccttcattgtg
tcccataagtttgggtatgttgtggcttcattttctttaaactccaaaag
tctttaatttcttcatttcttccttgaccaaggtaccattgagtagagtg
ttgttcagtttccacgtgaatgctggctttcttttatttatgctgttatt
gaagatcaaccttagtccttggtgatctgataggatacattggataattt
caacatttttgtatctgttgaggctgttttgtgactgattgattatatgg
tcaatgg
gaattcctattatttgtaggattagactttatatactgctccaaatttcc
tggatgtttttttttcttagaaacttattatacttagtattttctttgac
cagtgtatcaattccttctcctgtttcttctaaactattgactctctctt
gcatctctcatattctttcggtgattcttgcatatgtaattcctgttctc
tttctaggctttccttcttcaggattgccttttttgttttctctttattg
cttctatttctatttgcaggtcttaaacatatttattcttttccttcccc
tgtttaattttattttcttatacttctttatacttattcatttcctcctt
aaaggtctctacctgctttactgtatttccctgtaattctttaggggatt
tcttcattacctcattaaaggcctctacgatcttcataagcttagatata
aagtcattttctcatgcgtccagtattttagggtattcctgacttgttat
agtgggaaagtttggttgtggtggtattgtattgacctgacttttgttga
ttgtaatcttacgatagcatttatccttctggttgtccctggtattggca
gacctgataggctttgatggcagcaggcctctggaattcttggtagagct
ggttgtcatagttggcagaaggcttccagggattcaggcagagctgttta
gttcctgatggcttcgggcttttttgctgccctgagaggcagcagtcctc
cagaaaggctggaagagctgatgatgttccttgatggctgcagagctcga
gtaaatagaaagatggagcacaggggtaatagggaagatctcatggctac
tgggatgcaggagacccactgagcaaaggatggggcatgcgtatctcgcc
tgtttactggggtgtcacagggcttcagtgatacaagcataaccatggcc
tggggaatggagtgtggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66164702_66165149
seq2: B6Ng01-170A20.b_51_582 (reverse)

seq1  AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAAC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGGAAGCAAATTCACCCAAGAGGAGTAGACAGCAGGAAATAATCAAAC  50

seq1  TCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT  100
      | ||||  |||||||||||||||||||||| |||||||||||||||||| 
seq2  TTAGGGCAGAAATCAACCAAGTGGAAACAAAAAGAACTATTCAAAGAATC  100

seq1  AACCAAACGAGGAGTTGGTTCT-------------------------ACC  125
      |||||| ||||||| |||||||                         |||
seq2  AACCAATCGAGGAGCTGGTTCTTTGAGGAAATCAACAAGATAGATAAACC  150

seq1  CTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAA  175
      ||| |  ||||| |||  ||| || | |||||  || |||||||||||||
seq2  CTTTGTGAGACTAACTGGAGGTCATATGGACAGTATTCTAATTAACAAAA  200

seq1  TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAAC  225
      ||||||||||||| ||||||||||||| ||| ||||| |||||| |||||
seq2  TCAGAAATGAAAAAGGAGACATAACAATAGAACCTGAGGAAATCTAAAAC  250

seq1  ACCATCAGATCCTTCTACAAAAGGCTATACTCAACAA-------------  262
      | |||||||||||  ||||||||||||||||||| ||             
seq2  ATCATCAGATCCTATTACAAAAGGCTATACTCAAAAAAACCAAAAAACAA  300

seq1  -------------AACTGGAAAACCTGGACGAAATGGACAAATTTCTGGA  299
                   |||| ||||||||||| |||||| |||| ||  | ||
seq2  AAAAAACAAAAAGAACTAGAAAACCTGGAAGAAATGAACAACTTCATAGA  350

seq1  CAGATACCAGGTACCAAAGTTGAATCAGGATCAAG-TTGACCATCTAAAC  348
      || |||  || |||||||||||||||| || |||| || || ||||||| 
seq2  CATATAATAGCTACCAAAGTTGAATCAAGA-CAAGATTAACAATCTAAAT  399

seq1  AGTCCCATATCACCAAAAGAAATAGACGCAGTTATTAATAGTCTC-----  393
      | |||||| ||  | ||||||||||| ||||| || |||||||||     
seq2  ATTCCCATTTCTTCTAAAGAAATAGAAGCAGTCATCAATAGTCTCAAAAA  449

seq1  --------------------------CCAAC--CAAAAAAAGCCCAGGAC  415
                                 ||||  ||| |||| |||| |||
seq2  AAAAAAAAAAAAAAAAAACAACAACAACAACATCAACAAAAACCCAAGAC  499

seq1  CAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  448
      |||||||||||||||||| ||||||||||||||
seq2  CAGATGGGTTTAGTGCAGTGTTCTATCAGACCT  532

seq1: chrX_78719084_78719636
seq2: B6Ng01-170A20.g_495_1044 (reverse)

seq1  TCCCCTCCACACTCCATTCCCCAGGCCATGGCTATGCTTGTATCACTGAA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCCTCCACACTCCATTCCCCAGGCCATGGTTATGCTTGTATCACTGAA  50

seq1  GCCCTGTTGACACACAAGTAAAACAGGCGAGATACGCATGCCCCAATCCT  100
      |||||| |||||| | ||| |||||||||||||||||||||||| |||||
seq2  GCCCTG-TGACACCCCAGT-AAACAGGCGAGATACGCATGCCCC-ATCCT  97

seq1  TTGCTCAGTGGGTCTCCTGGCAATCCCAGTAGCCATGAGATCTTCCCTAT  150
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TTGCTCAGTGGGTCTCCTG--CATCCCAGTAGCCATGAGATCTTCCCTAT  145

seq1  TACCCCTGTGCTCCATC-TTCTACTTACTCGAGCTCTGCAGCCATCAAGG  199
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  TACCCCTGTGCTCCATCTTTCTATTTACTCGAGCTCTGCAGCCATCAAGG  195

seq1  AACATCATCAGCTCTTCCAGCCTTTCTGGAGGACTGCTGCCTCTCAGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATCAGCTCTTCCAGCCTTTCTGGAGGACTGCTGCCTCTCAGGGC  245

seq1  AGCAAAAAAGCCCGAAGCCATCAGGAACT-AACAGCTCTGCCTGAATCCC  298
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAAAAAAGCCCGAAGCCATCAGGAACTAAACAGCTCTGCCTGAATCCC  295

seq1  TGGAAGCCTTCTGCCAACTATGACAACCAGCTCTACCAAGAATTCCAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCTTCTGCCAACTATGACAACCAGCTCTACCAAGAATTCCAGAG  345

seq1  GCCTGCTGCCATCAAAGCCTATCAGGTCTGCCAATACCAGGGACAACCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGCCATCAAAGCCTATCAGGTCTGCCAATACCAGGGACAACCAG  395

seq1  AAGGATAAATGCTATCGTAAGATTACAATCAACAAAAGTCAGGTCAATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAATGCTATCGTAAGATTACAATCAACAAAAGTCAGGTCAATAC  445

seq1  AATACCACCACAACCAAACTTTCCCACTATAACAAGTCAGGAATACCCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACCACAACCAAACTTTCCCACTATAACAAGTCAGGAATACCCTA  495

seq1  AAATACTGGACGCATGAGAAAATGACTTTATATCTAAGCTTATGAAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGGACGCATGAGAAAATGACTTTATATCTAAGCTTATGAAGATC  545

seq1  GTAGA  553
      |||||
seq2  GTAGA  550