BAC Information

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BAC

Clone NameB6Ng01-170F13
Chromosome8 (Build37)
Map Location 126,546,612 - 126,679,214
singlet/doubletdoublet
Overlap geneAK122209
Upstream geneSpg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l
Downstream geneLOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F13.bB6Ng01-170F13.g
ACCDH961083DH961084
length831874
definitionDH961083|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F13, 5' end.DH961084|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,678,384 - 126,679,214)(126,546,612 - 126,547,487)
sequence
gaattctcacctgttttaaacttatttctctgaacactgtgaagagatca
gttaactactgactgttatctagagggacgatgctctcagtggtccaggc
actagaatagctcatgtcattaccaggctgttcttgcatggaacctacat
cctgtggaggagacaacataagggtacaggaagctgctctaggcacatcc
ttgtatttcagagtaacctagtccgtgaggacttgtcccaagttcccgtg
agaccaaagacagaggcaagagcacatcacaagggatgctgtttattggg
gactcataggtacatgactggggggggggcagcaagagctgtggatcctg
gaatgtggtcagaaggagggtatctgtactaattaggacagagtgacttc
acgcagggtgggatgcacttggtccatctgtgatcatagagtcaagcact
ctcctgacctgtgtcttgagttgtaaagccccaagcacctgtgctgaact
ttcggccgtttgtagtttgctgggacacactggtctgagagtagcaccaa
ggcttcacagctgtggagggatttggagggatgggagagaccgtcccttc
tggtggaattttccaccgaaatgaggaccaaaatagaaggcaccagggac
aagaaagggtccttgttaccttctgctatgtttatgcttgtgaactctcc
cataacaagcacagataagcatttcacagtctgagagactaggaatcaaa
tattaacttatgttagattcccctgcagacatggtctccctctagacaac
taaatcatcctcctcctcctcctccccctcc
gaattccctggaaattgacttacagatcgttgtgggtgctaggaactgga
ctcgggctctctacaggagtcacaagtgttctttactgctgagccgtttc
ctcagccacatcacctaatttctttttcacttcaagaagcattattttct
tcaagtactgtattgcttgcttttttgcttatttaatagtgctactcctg
ttacacaacacagttttgaagctgtgctaaaccatctctttcgatcttaa
atcatgaatggtgactgtcatcctgtgagtgatttacacactttgatttc
tccttattgaattcctgtattctctaagtgtgatcacagcaggagtactt
ataatctattgtctacctgcttttgatgaaagccagtttcaaattaacta
tatatttgacacaacatcttaccatgtatcctaggctggcctctgcttcc
taattgtacccaataaggtatatagggaggggttggagaggtggctcaaa
ggtaggagtacagctgctctcagagaggacctgggctcagttcccagtac
ctccttggcgcctaactcatgactatctgtactctagtctccaagactct
aatgccctctttgaccttctttggactcctgagtgcatatactcaggcac
atatacataaaaaaattttctttttaaaagatactgtccattttctgggg
tctgttcagttaggccttattataatactattttcctttttttatttgta
aaaacgtgtagcaatggctgctgtttattctgggtatttcctttaactta
aagcaataccacttcttgggaagataaataaaattactccctttgctggg
attcccatcagtgcattctaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126678384_126679214
seq2: B6Ng01-170F13.b_48_878 (reverse)

seq1  GGAGGGGGAGGAGGAGGAGGAGGATGATTTAGTTGTCTAGAGGGAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGGAGGAGGAGGAGGATGATTTAGTTGTCTAGAGGGAGACCA  50

seq1  TGACTGCAGGGGAATCTAACCTAAGTTAATATTTGATTCCTAGTCTCTCA  100
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCTGCAGGGGAATCTAACATAAGTTAATATTTGATTCCTAGTCTCTCA  100

seq1  GACTGTGAAATGCTTATCTGTGCTTTGTTATGGGAGAGTTCACAAGCATA  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACTGTGAAATGCTTATCTGTGC-TTGTTATGGGAGAGTTCACAAGCATA  149

seq1  AACATAGCAGAAGGTAACAAGGACCC-TTCTTGTCCCTGGTGCCTTCTAT  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACATAGCAGAAGGTAACAAGGACCCTTTCTTGTCCCTGGTGCCTTCTAT  199

seq1  TTTGGTCCTCATTTCGGTGGAAAATTCCACCAGAAGGGACGGTCTCTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCTCATTTCGGTGGAAAATTCCACCAGAAGGGACGGTCTCTCCC  249

seq1  ATCCCTCCAAATCCCTCCACAGCTGTGAAGCCTTGGTGCTACTCTCAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAAATCCCTCCACAGCTGTGAAGCCTTGGTGCTACTCTCAGAC  299

seq1  CAGTGTGTCCCAGCAAACTACAAACGGCCGAAAGTTCAGCACAGGTGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTCCCAGCAAACTACAAACGGCCGAAAGTTCAGCACAGGTGCTT  349

seq1  GGGGCTTTACAACTCAAGACACAGGTCAGGAGAGTGCTTGACTCTATGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTACAACTCAAGACACAGGTCAGGAGAGTGCTTGACTCTATGAT  399

seq1  CACAGATGGACCAAGTGCATCCCACCCTGCGTGAAGTCACTCTGTCCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGGACCAAGTGCATCCCACCCTGCGTGAAGTCACTCTGTCCTAA  449

seq1  TTAGTACAGATACCCTCCTTCTGACCACATTCCAGGATCCACAGCTCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAGATACCCTCCTTCTGACCACATTCCAGGATCCACAGCTCTTG  499

seq1  CTGCCCCCCCCCCAGTCATGTACCTATGAGTCCCCAATAAACAGCATCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCCCCCCAGTCATGTACCTATGAGTCCCCAATAAACAGCATCCC  549

seq1  TTGTGATGTGCTCTTGCCTCTGTCTTTGGTCTCACGGGAACTTGGGACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGTGCTCTTGCCTCTGTCTTTGGTCTCACGGGAACTTGGGACAA  599

seq1  GTCCTCACGGACTAGGTTACTCTGAAATACAAGGATGTGCCTAGAGCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACGGACTAGGTTACTCTGAAATACAAGGATGTGCCTAGAGCAGC  649

seq1  TTCCTGTACCCTTATGTTGTCTCCTCCACAGGATGTAGGTTCCATGCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTACCCTTATGTTGTCTCCTCCACAGGATGTAGGTTCCATGCAAG  699

seq1  AACAGCCTGGTAATGACATGAGCTATTCTAGTGCCTGGACCACTGAGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTGGTAATGACATGAGCTATTCTAGTGCCTGGACCACTGAGAGC  749

seq1  ATCGTCCCTCTAGATAACAGTCAGTAGTTAACTGATCTCTTCACAGTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCCTCTAGATAACAGTCAGTAGTTAACTGATCTCTTCACAGTGTT  799

seq1  CAGAGAAATAAGTTTAAAACAGGTGAGAATTC  831
      ||||||||||||||||||||||||||||||||
seq2  CAGAGAAATAAGTTTAAAACAGGTGAGAATTC  831

seq1: chr8_126546612_126547487
seq2: B6Ng01-170F13.g_68_941

seq1  GAATTCCCTGGAAATTGACTTACAGATCGTTGTGGGTGCTAGGAACTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGAAATTGACTTACAGATCGTTGTGGGTGCTAGGAACTGGA  50

seq1  CTCGGGCTCTCTACAGGAGTCACAAGTGTTCTTTACTGCTGAGCCGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCTCTCTACAGGAGTCACAAGTGTTCTTTACTGCTGAGCCGTTTC  100

seq1  CTCAGCCACATCACCTAATTTCTTTTTCACTTCAAGAAGCATTATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCACATCACCTAATTTCTTTTTCACTTCAAGAAGCATTATTTTCT  150

seq1  TCAAGTACTGTATTGCTTGCTTTTTTGCTTATTTAATAGTGCTACTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTGTATTGCTTGCTTTTTTGCTTATTTAATAGTGCTACTCCTG  200

seq1  TTACACAACACAGTTTTGAAGCTGTGCTAAACCATCTCTTTCGATCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAACACAGTTTTGAAGCTGTGCTAAACCATCTCTTTCGATCTTAA  250

seq1  ATCATGAATGGTGACTGTCATCCTGTGAGTGATTTACACACTTTGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATGGTGACTGTCATCCTGTGAGTGATTTACACACTTTGATTTC  300

seq1  TCCTTATTGAATTCCTGTATTCTCTAAGTGTGATCACAGCAGGAGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTGAATTCCTGTATTCTCTAAGTGTGATCACAGCAGGAGTACTT  350

seq1  ATAATCTATTGTCTACCTGCTTTTGATGAAAGCCAGTTTCAAATTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTATTGTCTACCTGCTTTTGATGAAAGCCAGTTTCAAATTAACTA  400

seq1  TATATTTGACACAACATCTTACCATGTATCCTAGGCTGGCCTCTGCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGACACAACATCTTACCATGTATCCTAGGCTGGCCTCTGCTTCC  450

seq1  TAATTGTACCCAATAAGGTATATAGGGAGGGGTTGGAGAGGTGGCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTACCCAATAAGGTATATAGGGAGGGGTTGGAGAGGTGGCTCAAA  500

seq1  GTTAGGAGTACAGCTGCTCTCAGAGAGGACCTGGGCTCAGTTCCCAGTAC  550
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGTACAGCTGCTCTCAGAGAGGACCTGGGCTCAGTTCCCAGTAC  550

seq1  CTCCATGGCGCCTAACTCATGACTATCTGTACTCTAGTCTCCAAGACTCT  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGCGCCTAACTCATGACTATCTGTACTCTAGTCTCCAAGACTCT  600

seq1  AATGCCCTCTTTGACCTTC-TTGGACTCCTGAGTGCATATACTCAGGCAC  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGCCCTCTTTGACCTTCTTTGGACTCCTGAGTGCATATACTCAGGCAC  650

seq1  ATATACAT-AAAAAATTTTCTTTTTAAAAGATACTGTCCATTTTCTGGTG  698
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  ATATACATAAAAAAATTTTCTTTTTAAAAGATACTGTCCATTTTCTGGGG  700

seq1  TCTGTTCAGTTAGGCCTTATTATAATACTATTTTCC-TTTTTTAATTGTA  747
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  TCTGTTCAGTTAGGCCTTATTATAATACTATTTTCCTTTTTTTATTTGTA  750

seq1  GAAGACGTGTAGCAATGGCTGCTGTTTATTCT-GGTATTTCCTTTAAACT  796
       || |||||||||||||||||||||||||||| |||||||||||| ||||
seq2  -AAAACGTGTAGCAATGGCTGCTGTTTATTCTGGGTATTTCCTTT-AACT  798

seq1  TAAAAGCAAGACAACTTCCTGGGAAGATAAACTAAAATTAGCTCACTTTG  846
      | ||||||| || ||||| |||||||||||| |||||||| ||| |||||
seq2  T-AAAGCAATACCACTTCTTGGGAAGATAAA-TAAAATTA-CTCCCTTTG  845

seq1  CTTGGATTTCCCATCAGTGCTTTCTACCAA  876
      || ||| ||||||||||||| |||||||||
seq2  CTGGGA-TTCCCATCAGTGCATTCTACCAA  874