BAC Information

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BAC

Clone NameB6Ng01-170G07
Chromosome8 (Build37)
Map Location 46,493,664 - 46,628,535
singlet/doubletdoublet
Overlap geneTlr3, Sorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170G07.bB6Ng01-170G07.g
ACCDH961115DH961116
length1,0931,051
definitionDH961115|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G07, 5' end.DH961116|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,493,664 - 46,494,761)(46,627,474 - 46,628,535)
sequence
gaattcctctctccccttttcagttaatgtctacccttactcccagaagc
aaccagtgccttccctacagattagtcctgtaacctcagaaaatgggatc
tcattcattctcatatacatgactgcctttattagtgcattagttttgaa
gttcacctgtaatatgtttttaaaacaattgcctcccctttccctcagat
gatatggtcatgacccccagtgatcatatgatatttactgattttttttc
tatgcatgtgagcctattataaactttgcattacaaaacagattgcaaag
taagagacaggcaactagcaaattttcctcgaggtattgttttcacctct
acttaccagattatgggtgcaatccctgtatcatattctactccttgctt
aggtaacatctatccctctggaaagactgtaaatagaaattagaattact
aaggaccaatgcatttccaaactgtatccctgaataactgaaagacagtc
tcaatctgaaaacaaacttcattgagagtgaaaagcaaaaaaaaaaaaaa
atccacccccccaaaaaaaatccactaatgaagcaggctgcatgaaaaac
aaggtcatgagtgactagaatgttagggaattcagaatggtgaccacatg
cacaagcagaaagacagagaaagtgggagggggacaaatcctaaacagcg
tgttaaggagatcataaaacttttttcatcagtaacacgagttagtaggt
aatagttaatagtaaggaaaagctttcaaaacagttagatacgtgtcaac
acaaaatcacatcataaagtcatgagaagagcttatgacaacttctatat
ggtgaatgttgactgctttccccaaactagtccataatttgccagcctgg
tttctgggcttactctacaacttccagaacagcctgccctctctctgctg
cccttctctccctaacagaaagtgactggtcagttcctagaaacattctg
agaatttgttctttcttcaagaacattgtcatggagtgcaggtcttcctt
tctagctcactaaatacaaggactttttaaccttctgcgtttt
gaattcaacctgagcctgaactctgctcttctgtgtattcaattattatg
ttaaaagtaagtcttaagaagtcatttaccactaataatttttcccgtgt
tgtttttcctttgggggttctttaaatgggagtttaaagaagatggtgag
tggatggtcagtttcaacaagccagtggctaaaatatttagtaatttatt
gccagcaaaactgaggaaggttgttagtctggggtgtcgatgtgtacagc
tctggtgtacaggtgagttttccaaagacccactcattgcaatggtttac
tttgaatttcttcccactaacactttatttggaactttgaaggtcaaacc
aagaccacgttcatagagaaaacaacttcacctttgtgatacactcctgt
gagaaaatgtttgactcgaaatcacacagagttcgattgtaagagtttgt
cataaatctatgtacatttcttaatatttacaacacggaaacactaagtg
catccaactggtgacatgcaaagattgaagattaaaaaaaaaaaaccctc
tacagagtaaaataagtatatactacagattctccagtttgaccgtctgt
ggttatagagctgggttctttttattgcagaccataacagggcaaaactg
cagcattcaactactgacaagtaaatgtggaaacaggtcataaattacct
cattgaagtatctgttttacactaggcaaattttaagtaaacatatattc
tctacgtccagtatctgtaatgaaaattcctgcttgaaccatcgtggctt
ctatgttcaacagtttgtagaagattgtttttcacaccagcagaatttac
ataatttttacttcctcatttcttaaaagcacgccttataatccgatcta
cagaattataactgtacgtgttaacattgagaaaacacctagaaagcaat
cttgtttttgtaactggcccagggcgtaagctgggctgtattagccgctg
gttcaaacccaatgctctcaatctgtaacattgagactggggcggaaagg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46493664_46494761
seq2: B6Ng01-170G07.b_46_1138

seq1  GAATTCCTCTCTCCCCTTTTCAGTTAATGTCTACCCTTACTCCCAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTCCCCTTTTCAGTTAATGTCTACCCTTACTCCCAGAAGC  50

seq1  AACCAGTGCCTTCCCTACAGATTAGTCCTGTAACCTCAGAAAATGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGCCTTCCCTACAGATTAGTCCTGTAACCTCAGAAAATGGGATC  100

seq1  TCATTCATTCTCATATACATGACTGCCTTTATTAGTGCATTAGTTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCTCATATACATGACTGCCTTTATTAGTGCATTAGTTTTGAA  150

seq1  GTTCACCTGTAATATGTTTTTAAAACAATTGCCTCCCCTTTCCCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTGTAATATGTTTTTAAAACAATTGCCTCCCCTTTCCCTCAGAT  200

seq1  GATATGGTCATGACCCCCAGTGATCATATGATATTTACTGATTTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGTCATGACCCCCAGTGATCATATGATATTTACTGATTTTTTTTC  250

seq1  TATGCATGTGAGCCTATTATAAACTTTGCATTACAAAACAGATTGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGTGAGCCTATTATAAACTTTGCATTACAAAACAGATTGCAAAG  300

seq1  TAAGAGACAGGCAACTAGCAAATTTTCCTCGAGGTATTGTTTTCACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACAGGCAACTAGCAAATTTTCCTCGAGGTATTGTTTTCACCTCT  350

seq1  ACTTACCAGATTATGGGTGCAATCCCTGTATCATATTCTACTCCTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAGATTATGGGTGCAATCCCTGTATCATATTCTACTCCTTGCTT  400

seq1  AGGTAACATCTATCCCTCTGGAAAGACTGTAAATAGAAATTAGAATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATCTATCCCTCTGGAAAGACTGTAAATAGAAATTAGAATTACT  450

seq1  AAGGACCAATGCATTTCCAAACTGTATCCCTGAATAACTGAAAGACAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAATGCATTTCCAAACTGTATCCCTGAATAACTGAAAGACAGTC  500

seq1  TCAATCTGAAAACAAACTTCATTGAGAGTGAAAAGCAAAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGAAAACAAACTTCATTGAGAGTGAAAAGCAAAAAAAAAAAAAA  550

seq1  ATCCACCCCCCCAAAAAAAATCCACTAATGAAGCAGGCTGCATGAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCCCCCAAAAAAAATCCACTAATGAAGCAGGCTGCATGAAAAAC  600

seq1  AAGGTCATGAGTGACTAGAATGTTAGGGAATTCAGAATGGTGACCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGAGTGACTAGAATGTTAGGGAATTCAGAATGGTGACCACATG  650

seq1  CACAAGCAGAAAGACAGAGAAAGTGGGAGGGGGACAAATCCTAAACAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAGAAAGACAGAGAAAGTGGGAGGGGGACAAATCCTAAACAGCG  700

seq1  TGTTAAGGAGATCATAAAACTTTTTTCATCAGTAACACGAGTTAGTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGAGATCATAAAACTTTTTTCATCAGTAACACGAGTTAGTAGGT  750

seq1  AATAGTTAATAGTAAGGAAAAGCTTTCAAAACAGTTAGATACGTGTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAATAGTAAGGAAAAGCTTTCAAAACAGTTAGATACGTGTCAAC  800

seq1  ACAAAATCACATCATAAAGTCATGAGAAGAGCTTATGACAACTTCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCACATCATAAAGTCATGAGAAGAGCTTATGACAACTTCTATAT  850

seq1  GGTGAAGGTTGACTGCTTTCCCCAAACTAGTCCATAATTTGCCAGCCTGG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGTTGACTGCTTTCCCCAAACTAGTCCATAATTTGCCAGCCTGG  900

seq1  TTTCTGGCCTTACTCTACAACTTCCAGAACAGCCTGCCCTCCTCTCCTGC  950
      ||||||| |||||||||||||||||||||||||||||||| |||| ||||
seq2  TTTCTGGGCTTACTCTACAACTTCCAGAACAGCCTGCCCT-CTCT-CTGC  948

seq1  TGCCCTTCTTCATTCTGTAACAGAAAGTGACTGGCCAGTTCCTAGAAACA  1000
      |||||||||    ||  ||||||||||||||||| |||||||||||||||
seq2  TGCCCTTCT---CTCCCTAACAGAAAGTGACTGGTCAGTTCCTAGAAACA  995

seq1  -TCTGAGAATTTGTCCTTTC-TCAAGAACATTGTCATGGAGTGCCAGGTC  1048
       ||||||||||||| ||||| |||||||||||||||||||||| ||||||
seq2  TTCTGAGAATTTGTTCTTTCTTCAAGAACATTGTCATGGAGTG-CAGGTC  1044

seq1  TTCCTTTCTAGCTCACTAAATACAAAGGACTTTTTAACCTTCTGCGTTTT  1098
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCTTTCTAGCTCACTAAATAC-AAGGACTTTTTAACCTTCTGCGTTTT  1093

seq1: chr8_46627474_46628535
seq2: B6Ng01-170G07.g_68_1118 (reverse)

seq1  GCCTTTCAGCCCCAAGTCTCAGATTGTTACAGATTCGGAGGCTATCGGTT  50
      ||||||| ||||| ||||||  | |||||||||||  |||   || || |
seq2  GCCTTTCCGCCCC-AGTCTC--AATGTTACAGATT--GAGAGCATTGGGT  45

seq1  TCTGAACCAGCTGGCTAATAACACGCCAGCCTACGCCCATGCGACCAGTT  100
      | ||||||||| ||||||| |||  ||||| ||||||| || | ||||||
seq2  T-TGAACCAGC-GGCTAAT-ACAGCCCAGCTTACGCCC-TG-GGCCAGTT  90

seq1  AC-AAAACAAGA-TGCTTTCTAGGTGATTTCTCAATGTTAACACGGTACA  148
      || ||||||||| ||||||||||||| ||||||||||||||||| |||||
seq2  ACAAAAACAAGATTGCTTTCTAGGTGTTTTCTCAATGTTAACAC-GTACA  139

seq1  GTGATAATTCTGTAGATCGGATTATAAAGGCGTGCTTTTAAGAAATGAGG  198
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTATAATTCTGTAGATCGGATTAT-AAGGCGTGCTTTTAAGAAATGAGG  188

seq1  AAGTAAAAATTATGTAAATTCTGCTGGTGTGGAAAAACAATCTTCTACAA  248
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTAAAAATTATGTAAATTCTGCTGGTGT-GAAAAACAATCTTCTACAA  237

seq1  ACTGTTGAACATAGAAGCCACGATGGTTCAAGCAGGAATTTTCATTACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAACATAGAAGCCACGATGGTTCAAGCAGGAATTTTCATTACAG  287

seq1  ATACTGGACGTAGAGAATATATGTTTACTTAAAATTTGCCTAGTGTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGACGTAGAGAATATATGTTTACTTAAAATTTGCCTAGTGTAAAA  337

seq1  CAGATACTTCAATGAGGTAATTTATGACCTGTTTCCACATTTACTTGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTCAATGAGGTAATTTATGACCTGTTTCCACATTTACTTGTCA  387

seq1  GTAGTTGAATGCTGCAGTTTTGCCCTGTTATGGTCTGCAATAAAAAGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAATGCTGCAGTTTTGCCCTGTTATGGTCTGCAATAAAAAGAAC  437

seq1  CCAGCTCTATAACCACAGACGGTCAAACTGGAGAATCTGTAGTATATACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTATAACCACAGACGGTCAAACTGGAGAATCTGTAGTATATACT  487

seq1  TATTTTACTCTGTAGAGGGTTTTTTTTTTTTAATCTTCAATCTTTGCATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTCTGTAGAGGGTTTTTTTTTTTTAATCTTCAATCTTTGCATG  537

seq1  TCACCAGTTGGATGCACTTAGTGTTTCCGTGTTGTAAATATTAAGAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTTGGATGCACTTAGTGTTTCCGTGTTGTAAATATTAAGAAATG  587

seq1  TACATAGATTTATGACAAACTCTTACAATCGAACTCTGTGTGATTTCGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGATTTATGACAAACTCTTACAATCGAACTCTGTGTGATTTCGAG  637

seq1  TCAAACATTTTCTCACAGGAGTGTATCACAAAGGTGAAGTTGTTTTCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATTTTCTCACAGGAGTGTATCACAAAGGTGAAGTTGTTTTCTCT  687

seq1  ATGAACGTGGTCTTGGTTTGACCTTCAAAGTTCCAAATAAAGTGTTAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGTGGTCTTGGTTTGACCTTCAAAGTTCCAAATAAAGTGTTAGTG  737

seq1  GGAAGAAATTCAAAGTAAACCATTGCAATGAGTGGGTCTTTGGAAAACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATTCAAAGTAAACCATTGCAATGAGTGGGTCTTTGGAAAACTC  787

seq1  ACCTGTACACCAGAGCTGTACACATCGACACCCCAGACTAACAACCTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACACCAGAGCTGTACACATCGACACCCCAGACTAACAACCTTCC  837

seq1  TCAGTTTTGCTGGCAATAAATTACTAAATATTTTAGCCACTGGCTTGTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTGCTGGCAATAAATTACTAAATATTTTAGCCACTGGCTTGTTG  887

seq1  AAACTGACCATCCACTCACCATCTTCTTTAAACTCCCATTTAAAGAACCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCATCCACTCACCATCTTCTTTAAACTCCCATTTAAAGAACCC  937

seq1  CCAAAGGAAAAACAACACGGGAAAAATTATTAGTGGTAAATGACTTCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAAAAACAACACGGGAAAAATTATTAGTGGTAAATGACTTCTTA  987

seq1  AGACTTACTTTTAACATAATAATTGAATACACAGAAGAGCAGAGTTCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTTTTAACATAATAATTGAATACACAGAAGAGCAGAGTTCAGG  1037

seq1  CTCAGGTTGAATTC  1062
      ||||||||||||||
seq2  CTCAGGTTGAATTC  1051