BAC Information

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BAC

Clone NameB6Ng01-170J08
Chromosome8 (Build37)
Map Location 5,067,706 - 5,068,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
Downstream geneLOC436026, Slc10a2, LOC434275, LOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J08.bB6Ng01-170J08.g
ACCDH961259DH961260
length1,1191,146
definitionDH961259|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J08, 5' end.DH961260|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaattccagaactcacatgaaaatctgtatttgtgcacctttga
atctgtgattccagcactgggtgatgcagggacaaaattacttgcttgaa
ctgaatggctgacagcctaagcccggtttagagagagattgtagttcaat
agaataaagaatgataaagcaagacctccaacacattcctctggtatctt
accaacaagcacagctaccacacacacaacactgttttgtcaatgtccaa
tcctttctctcattctaaggtaataagacacaaatatattgagcttctgt
gaatatatttcacacagattttaatgccatgttcatactctgggatgctt
ctatactgaacagtttctagatttttatgaattggttgaaaataatattt
aagacttcaaagtgaatatataatgaaagagaaattgaacaacaatcagt
ctgctcagaaatttccaagaagaggacgaggtaatatatctagactcctc
atccatctgagcatcaagtgtttattaggcaaacagggtgttccaggaag
ggaaaatagatcaaatggctttcactaaagcactataaatcatagtttat
tttcctgatccttaattagcacaattaaagaagaaatcaccaccactcca
gaagattcatttattaaacattcatttttttcttgatgtaagaaaatacg
taatattttatctccagtgactctctaaggaaggtccactaaggagcaca
caggttgcagaagcagcagagcagctgggtggggtcctgtggacctacat
ctgcacccaggaggtggagctgatcctcagcacacagtaataatgggaga
tttcaacaccccaatctcatcaacgaatagatcatgtaaacagaaactaa
gcatagacatggggaaactaacataagttatgaaacaaatggatttaaca
gatatctatagaacattttatcctaaaacaaaggatataacttcttccca
gaacctcatggtaaatatccaaattgatcatataatcagttataaaacag
gcatcaacaggatgcaaaatgtggaaataattccatgcatctatccagat
caccatggactaggaggat
gaattctttttccgtatctaacgagatgatcatgtggtttttgtctttga
gtttgtttataatactggattacgttgatggatttacaaatactgaacca
tccctgcatccctggaataaaacctacttggtcaggatggatgatttctt
taatgtgttcttggattcggctcgagagaattttattgagtatttttgca
tcgatattcttaagggaacctggtcagaagttctccatctttgttggatc
tttctgtattttaggtatcagagtaattgtggcttcatacaatgagttgg
gtagagtaccttctatttctattttgtggaatagtttgtgcagaactggg
attagatcttctttgaaggtctggtagaactctgcactaaacccatctga
tcctgggctttttttggctgggagactattaatgactgcttctatttctt
taggggatatgggactgtttagatcgttaacttgatcctgatttaacttt
ggtacctggtatctgtctagaaatttgtccattttttccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggtttt
ttcaggatccgttgttatgtcacccttttcatttctgattttgttaatta
ggatgttgtccctgtgccctctagtgagtctagctaagggtttatctatc
ttgttgattttctcaaagaaccaactccttgattggttaattctttgaat
agttcttcttgtttccacttggttgatttaacccctgagtttgattattt
cctgccctctactcctcttgggtgaatttgcttcctttttttctagagct
tttagatgtgttgtcaagctgctagtatgtgctctctcccatttcttctt
ggaggcactcagagctatgagtttccctcttagaaatgctttcattgtgt
ccataagtttgggtatgtgtggcttcatttcattaacctctaaaaagtct
taatttctttctttatttccttccttaaccaaggtatcattgagcaagag
gttgtcaaggtccacggaatgttgccctctatatatgtggtatgaaaatc
agtcctaggccctgggggctcgaagggatcatgggaaatctcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5067706_5068825
seq2: B6Ng01-170J08.b_43_1161 (reverse)

seq1  ATCCT--TAGTCCATGGTGATCTGATAAGATGCATGGAATTATTTCAACA  48
      |||||  |||||||||||||||||   ||||||||||||||||||| |||
seq2  ATCCTCCTAGTCCATGGTGATCTGGATAGATGCATGGAATTATTTCCACA  50

seq1  TTTTTGCAT-CTGTTGATGCCTGTTTTATAACTGATTATATGATCAATTT  97
       |||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  -TTTTGCATCCTGTTGATGCCTGTTTTATAACTGATTATATGATCAA-TT  98

seq1  TGGATAATTTACCATGAGGTTCTGGGAAGAAGTTATATCCTTTTGTTTTA  147
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAT-ATTTACCATGAGGTTCTGGGAAGAAGTTATATCC-TTTGTTTTA  146

seq1  GGATAAAATGTTCTATAGATATCTGTTAAATCCATTTGTTTCATAACTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAATGTTCTATAGATATCTGTTAAATCCATTTGTTTCATAACTTA  196

seq1  TGTTAGTTTCCCCATGTCTATGCTTAGTTTCTGTTTACATGATCTATTCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTCCCCATGTCTATGCTTAGTTTCTGTTTACATGATCTATTCG  246

seq1  TTGATGAGATTGGGGTGTTGAAATCTCCCATTATTACTGTGTGCTGAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGATTGGGGTGTTGAAATCTCCCATTATTACTGTGTGCTGAGGA  296

seq1  TCAGCTCCACCTCCTGGGTGCAGATGTAGGTCCACAGGACCCCACCCAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCACCTCCTGGGTGCAGATGTAGGTCCACAGGACCCCACCCAGC  346

seq1  TGCTCTGCTGCTTCTGCAACCTGTGTGCTCCTTAGTGGACCTTCCTTAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTGCTTCTGCAACCTGTGTGCTCCTTAGTGGACCTTCCTTAGA  396

seq1  GAGTCACTGGAGATAAAATATTACGTATTTTCTTACATCAAGAAAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTGGAGATAAAATATTACGTATTTTCTTACATCAAGAAAAAAAT  446

seq1  GAATGTTTAATAAATGAATCTTCTGGAGTGGTGGTGATTTCTTCTTTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTAATAAATGAATCTTCTGGAGTGGTGGTGATTTCTTCTTTAAT  496

seq1  TGTGCTAATTAAGGATCAGGAAAATAAACTATGATTTATAGTGCTTTAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAATTAAGGATCAGGAAAATAAACTATGATTTATAGTGCTTTAGT  546

seq1  GAAAGCCATTTGATCTATTTTCCCTTCCTGGAACACCCTGTTTGCCTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATTTGATCTATTTTCCCTTCCTGGAACACCCTGTTTGCCTAAT  596

seq1  AAACACTTGATGCTCAGATGGATGAGGAGTCTAGATATATTACCTCGTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGATGCTCAGATGGATGAGGAGTCTAGATATATTACCTCGTCC  646

seq1  TCTTCTTGGAAATTTCTGAGCAGACTGATTGTTGTTCAATTTCTCTTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGGAAATTTCTGAGCAGACTGATTGTTGTTCAATTTCTCTTTCA  696

seq1  TTATATATTCACTTTGAAGTCTTAAATATTATTTTCAACCAATTCATAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTCACTTTGAAGTCTTAAATATTATTTTCAACCAATTCATAAA  746

seq1  AATCTAGAAACTGTTCAGTATAGAAGCATCCCAGAGTATGAACATGGCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAACTGTTCAGTATAGAAGCATCCCAGAGTATGAACATGGCAT  796

seq1  TAAAATCTGTGTGAAATATATTCACAGAAGCTCAATATATTTGTGTCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGTGTGAAATATATTCACAGAAGCTCAATATATTTGTGTCTTA  846

seq1  TTACCTTAGAATGAGAGAAAGGATTGGACATTGACAAAACAGTGTTGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGAATGAGAGAAAGGATTGGACATTGACAAAACAGTGTTGTGT  896

seq1  GTGTGGTAGCTGTGCTTGTTGGTAAGATACCAGAGGAATGTGTTGGAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAGCTGTGCTTGTTGGTAAGATACCAGAGGAATGTGTTGGAGGT  946

seq1  CTTGCTTTATCATTCTTTATTCTATTGAACTACAATCTCTCTCTAAACCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTATCATTCTTTATTCTATTGAACTACAATCTCTCTCTAAACCG  996

seq1  GGCTTAGGCTGTCAGCCATTCAGTTCAAGCAAGTAATTTTGTCCCTGCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGCTGTCAGCCATTCAGTTCAAGCAAGTAATTTTGTCCCTGCAT  1046

seq1  CACCCAGTGCTGGAATCACAGATTCAAAGGTGCACAAATACAGATTTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCTGGAATCACAGATTCAAAGGTGCACAAATACAGATTTTCA  1096

seq1  TGTGAGTTCTGGAATTTGAATTC  1120
      |||||||||||||||||||||||
seq2  TGTGAGTTCTGGAATTTGAATTC  1119