BAC Information

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BAC

Clone NameB6Ng01-170L21
Chromosome8 (Build37)
Map Location 120,999,320 - 121,127,006
singlet/doubletdoublet
Overlap geneCdh13
Upstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L21.bB6Ng01-170L21.g
ACCDH961377DH961378
length1,0981,123
definitionDH961377|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L21, 5' end.DH961378|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,125,906 - 121,127,006)(120,999,320 - 121,000,445)
sequence
gaattcaaacaaaataaaaaagccagtatctattcagcatgcatgtcttt
tggttgttttaaatatttttgacctgcagttagacaaatgcatggaaaat
gtcttgggcacggagggcaaatgccatataattatagttgttattgaaca
aagagaaagaagcctatgagaatgtcagaggtggtaactcaatgtaaacg
tcagatcctgggtgcaggagacctcccctagagtgtggaggcagaagaga
gtttataagtttgggatggagtagagccacagttgtagggacagaaactg
ccccggggatgatggttaatctcaattacaaacttaatggaatctagaat
cacagggtttctgggcaaagctataagggaataaccttgactaggttaat
tgaagtgggaagacctggccactgcaggtggtgccattccctgagctgag
acacaggactgtagaaaaggtggccgagggaaactaagtatggattcgaa
gtgacaagctgcctcatgttcctgcctctgtgactcccccacgtgaggga
ctatggcctccaaatgtgagccaaagaaaccctctccacccctaatttgg
acttcatcgtggcaactggcgaactgtttaatacagatggaaaggtgctt
ccagtgtggacagggctcagggaggtgtgaagattcagctgtgttgtgcg
gtggagagttcggggggctctggaaggcagagacacagtctcagattcag
gacacctgctcggatgtctcagctgctgctcacggcagcccctgccaagg
cagaatccagcatgacacgctctggcaggcaagcaccttcctgtatgact
gcatcccccccccactcccctctgaatcacaacagagaacagaaacactc
gaactccaagtgatttgtatttaagaactccctgtaattaaaaacctcag
tggacgtgttggcattagccatttttttttttaaaacagagggacacatc
gcaacaggacaagcacaagagcaacctcctttgtacttgacaaggaatgc
cagggaaacagaaagagaaactcaagttgaactctgggcctctgtcat
gaattctttataggagtattaatagcaatacctagacctcccaatcctcc
tcctcttcttcatcttcctcctcctcttcttcttcctcctcttccttctc
ttttcctctcctttcctcctcctcttcctcttcctttcctcttctttctt
cctccttctcctcttcctcttcttcttcctcttccttctcctcttccttc
ctcttcctcctcctcctcctcctccttcttttctccccagctccaggaag
atggggctaccaaacccagtttatgtagttctggcgatcatactcagaac
tttattatgctaggcaacacattctcctgccgagtatttccccagaacct
gtattgcccctcacagtctaggggctgattgcctaggctcagcacagtgc
atctcattcaggacttcttaggtaggtgacatcatctggacactttctca
ttcatatgccctatgtctggacagacacagccaagcagccagtagagctg
ggctctccggacatctttctgtcaggatctccaacatggaagcttccagg
gggctgtgcttttcctaggttgccttgcgttccactctctgtgctctgtt
cccaggtttcgttggcaagttaagttctgaatattttgcaataataataa
taataataaagaaatagactttattttaccctcagagagctttgcattca
ttgttggagtaatattggaaaagcattcagaaatcacagatatgtcttgc
tcaccagagcagtgagggacactctgctgttctgacgccctccaagactg
ttgccacaatcgaacctcgttaagaaaattccgtggggccttcctgttat
gttggtgcatattcattcatacaccacataggtctatcacaccgcatgct
tacttcacgtacacagtggtaaggttttctatgtatattttcatccatgg
gtatcacacactctgaccatattcttcaccccatgccctcctcttttctt
ccaccttctacttctgaaaagttggctccctaccacaccacttcataaaa
caccccacaactacaacagaagcacatgcgagccatcttcacagcaacac
agtttctttcttttggtggttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_121125906_121127006
seq2: B6Ng01-170L21.b_45_1142 (reverse)

seq1  ATGACAGAGG-CCAGAGTTTCACTTGAG-TTCTC-TTCTGTATCCCCTGG  47
      |||||||||| ||||||||  ||||||| ||||| |||||| ||||   |
seq2  ATGACAGAGGCCCAGAGTTCAACTTGAGTTTCTCTTTCTGTTTCCC--TG  48

seq1  GCACTTCCTTGTCAAGTTACAAAGGAGGTTGGCTCTTTGTGCTTGT-CTG  96
      ||| |||||||||||| ||||||||||||| |||| |||||||||| |||
seq2  GCA-TTCCTTGTCAAG-TACAAAGGAGGTT-GCTC-TTGTGCTTGTCCTG  94

seq1  TTGCGATGTGTCCCCTCTGTTTTAAAAAAAAAAAATGGCTAATGCCAACA  146
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TTGCGATGTGT-CCCTCTGTTTT-AAAAAAAAAAATGGCTAATGCCAACA  142

seq1  CGTCCACTGAGGTTTTTAATTACAGGGAGTTC-TCAATACAAATCACTTG  195
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  CGTCCACTGAGGTTTTTAATTACAGGGAGTTCTTAAATACAAATCACTTG  192

seq1  GAGTTCGAGTGTTTCTGTTCTCTGTTGTGATTCAGAGGGGAGTGGGGGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGTGTTTCTGTTCTCTGTTGTGATTCAGAGGGGAGTGGGGGGG  242

seq1  GGATGCAGTCATACAGGAAGGTGCTTGCCTGCCAGAGCGTGTCATGCTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGTCATACAGGAAGGTGCTTGCCTGCCAGAGCGTGTCATGCTGG  292

seq1  ATTCTGCCTTGGCAGGGGCTGCCGTGAGCAGCAGCTGAGACATCCGAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTTGGCAGGGGCTGCCGTGAGCAGCAGCTGAGACATCCGAGCA  342

seq1  GGTGTCCTGAATCTGAGACTGTGTCTCTGCCTTCCAGAGCCCCCCGAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGAATCTGAGACTGTGTCTCTGCCTTCCAGAGCCCCCCGAACT  392

seq1  CTCCACCGCACAACACAGCTGAATCTTCACACCTCCCTGAGCCCTGTCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCGCACAACACAGCTGAATCTTCACACCTCCCTGAGCCCTGTCCA  442

seq1  CACTGGAAGCACCTTTCCATCTGTATTAAACAGTTCGCCAGTTGCCACGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGCACCTTTCCATCTGTATTAAACAGTTCGCCAGTTGCCACGA  492

seq1  TGAAGTCCAAATTAGGGGTGGAGAGGGTTTCTTTGGCTCACATTTGGAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCAAATTAGGGGTGGAGAGGGTTTCTTTGGCTCACATTTGGAGG  542

seq1  CCATAGTCCCTCACGTGGGGGAGTCACAGAGGCAGGAACATGAGGCAGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTCCCTCACGTGGGGGAGTCACAGAGGCAGGAACATGAGGCAGCT  592

seq1  TGTCACTTCGAATCCATACTTAGTTTCCCTCGGCCACCTTTTCTACAGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCGAATCCATACTTAGTTTCCCTCGGCCACCTTTTCTACAGTC  642

seq1  CTGTGTCTCAGCTCAGGGAATGGCACCACCTGCAGTGGCCAGGTCTTCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCAGCTCAGGGAATGGCACCACCTGCAGTGGCCAGGTCTTCCC  692

seq1  ACTTCAATTAACCTAGTCAAGGTTATTCCCTTATAGCTTTGCCCAGAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTAACCTAGTCAAGGTTATTCCCTTATAGCTTTGCCCAGAAAC  742

seq1  CCTGTGATTCTAGATTCCATTAAGTTTGTAATTGAGATTAACCATCATCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTCTAGATTCCATTAAGTTTGTAATTGAGATTAACCATCATCC  792

seq1  CCGGGGCAGTTTCTGTCCCTACAACTGTGGCTCTACTCCATCCCAAACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCAGTTTCTGTCCCTACAACTGTGGCTCTACTCCATCCCAAACTT  842

seq1  ATAAACTCTCTTCTGCCTCCACACTCTAGGGGAGGTCTCCTGCACCCAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTCTTCTGCCTCCACACTCTAGGGGAGGTCTCCTGCACCCAGG  892

seq1  ATCTGACGTTTACATTGAGTTACCACCTCTGACATTCTCATAGGCTTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGTTTACATTGAGTTACCACCTCTGACATTCTCATAGGCTTCTT  942

seq1  TCTCTTTGTTCAATAACAACTATAATTATATGGCATTTGCCCTCCGTGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTTCAATAACAACTATAATTATATGGCATTTGCCCTCCGTGCC  992

seq1  CAAGACATTTTCCATGCATTTGTCTAACTGCAGGTCAAAAATATTTAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATTTTCCATGCATTTGTCTAACTGCAGGTCAAAAATATTTAAAA  1042

seq1  CAACCAAAAGACATGCATGCTGAATAGATACTGGCTTTTTTATTTTGTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAAGACATGCATGCTGAATAGATACTGGCTTTTTTATTTTGTTT  1092

seq1  GAATTC  1101
      ||||||
seq2  GAATTC  1098

seq1: chr8_120999320_121000445
seq2: B6Ng01-170L21.g_66_1188

seq1  GAATTCTTTATAGGAGTATTAATAGCAATACCTAGACCTCCCAATCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGGAGTATTAATAGCAATACCTAGACCTCCCAATCCTCC  50

seq1  TCCTCTTCTTCATCTTCCTCCTCCTCTTCTTCTTCCTCCTCTTCCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTTCATCTTCCTCCTCCTCTTCTTCTTCCTCCTCTTCCTTCTC  100

seq1  TTTTCCTCTCCTTTCCTCCTCCTCTTCCTCTTCCTTTCCTCTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTCCTTTCCTCCTCCTCTTCCTCTTCCTTTCCTCTTCTTTCTT  150

seq1  CCTCCTTCTCCTCTTCCTCTTCTTCTTCCTCTTCCTTCTCCTCTTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCCTCTTCCTCTTCTTCTTCCTCTTCCTTCTCCTCTTCCTTC  200

seq1  CTCTTCCTCCTCCTCCTCCTCCTCCTTCTTTTCTCCCCAGCTCCAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCCTCCTCCTCCTCCTCCTTCTTTTCTCCCCAGCTCCAGGAAG  250

seq1  ATGGGGCTACCAAACCCAGTTTATGTAGTTCTGGCGATCATACTCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTACCAAACCCAGTTTATGTAGTTCTGGCGATCATACTCAGAAC  300

seq1  TTTATTATGCTAGGCAACACATTCTCCTGCCGAGTATTTCCCCAGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGCTAGGCAACACATTCTCCTGCCGAGTATTTCCCCAGAACCT  350

seq1  GTATTGCCCCTCACAGTCTAGGGGCTGATTGCCTAGGCTCAGCACAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCCCCTCACAGTCTAGGGGCTGATTGCCTAGGCTCAGCACAGTGC  400

seq1  ATCTCATTCAGGACTTCTTAGGTAGGTGACATCATCTGGACACTTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTCAGGACTTCTTAGGTAGGTGACATCATCTGGACACTTTCTCA  450

seq1  TTCATATGCCCTATGTCTGGACAGACACAGCCAAGCAGCCAGTAGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGCCCTATGTCTGGACAGACACAGCCAAGCAGCCAGTAGAGCTG  500

seq1  GGCTCTCCGGACATCTTTCTGTCAGGATCTCCAACATGGAAGCTTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCGGACATCTTTCTGTCAGGATCTCCAACATGGAAGCTTCCAGG  550

seq1  GGGCTGTGCTTTTCCTAGGTTGCCTTGCGTTCCACTCTCTGTGCTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCTTTTCCTAGGTTGCCTTGCGTTCCACTCTCTGTGCTCTGTT  600

seq1  CCCAGGTTTCGTTGGCAAGTTAAGTTCTGAATATTTTGCAATAATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTCGTTGGCAAGTTAAGTTCTGAATATTTTGCAATAATAATAA  650

seq1  TAATAATAAAGAAATAGACTTTATTTTACCCTCAGAGAGCTTTGCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAAGAAATAGACTTTATTTTACCCTCAGAGAGCTTTGCATTCA  700

seq1  TTGTTGGAGTAATATTGGAAAAGCATTCAGAAATCACAGATATGTCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGTAATATTGGAAAAGCATTCAGAAATCACAGATATGTCTTGC  750

seq1  TCACCAGAGCAGTGAGGGACACTCTGCTGTTCTGACGCCCTCCAAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGCAGTGAGGGACACTCTGCTGTTCTGACGCCCTCCAAGACTG  800

seq1  TTGCCACAATCGAACCTCGTTAAGAAAATTCCGTGGGGCCTTCCTGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAATCGAACCTCGTTAAGAAAATTCCGTGGGGCCTTCCTGTTAT  850

seq1  GTTGGTGCATATTCATTCATACACCACATAGGTCTATCACACCGCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCATATTCATTCATACACCACATAGGTCTATCACACCGCATGCT  900

seq1  TACTTCACGTACACAGTGGTAAGGTTTTCTATGTATATTTTCATCCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACGTACACAGTGGTAAGGTTTTCTATGTATATTTTCATCCATGG  950

seq1  GTATCACACACTCTGACCATATTCTTCACCCCATGCCCTCCTCTTTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACACACTCTGACCATATTCTTCACCCCATGCCCTCCTCTTTTCTT  1000

seq1  CCACCTTCTACTCCTG-ATAGTTGCCTCCCTACCACACCCACTTCATACA  1049
      |||||||||||| ||| | ||||| |||||||||||| |||||||||| |
seq2  CCACCTTCTACTTCTGAAAAGTTGGCTCCCTACCACA-CCACTTCATA-A  1048

seq1  CACACACACACACACACACACAGAGGCACATGCGAGCCATC-TCACAGCA  1098
       |||| | ||||   ||| ||||| |||||||||||||||| ||||||| 
seq2  AACAC-CCCACAACTACA-ACAGAAGCACATGCGAGCCATCTTCACAGC-  1095

seq1  AACACAAGTTTCCTTCTTTT-GTGGTTGA  1126
      ||||| |||||| ||||||| ||||||||
seq2  AACAC-AGTTTCTTTCTTTTGGTGGTTGA  1123