BAC Information

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BAC

Clone NameB6Ng01-171C12
Chromosome8 (Build37)
Map Location 79,406,187 - 79,407,236
singlet/doubletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226, LOC384847
Downstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C12.bB6Ng01-171C12.g
ACCGA000113GA000114
length1,0911,152
definitionB6Ng01-171C12.b B6Ng01-171C12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaactctgaagagagcatcatggcagccatttacctcacgaatg
acaagaagagaaagctggaatccaagaagggcttaggctagatccagtca
gggagtatgtcttcatgtcttatcaattccatcgtagaaagacccacttc
caccaattaggtcccatctcctgatctttatcactcacaggtgatattca
ccaatggatcaggcatctgatgagatcaaagactccagaatccaataact
tagcaatatttcatcaccttgcacccgatccctgagcctcaaatccatag
ttatatacataggtgtatatagctgattttatattcaagccatagcagag
gtgaagactgaaaaccttgggtataggatacagcctgggtttagatatca
cccccaaacactgtataactgcaggtaaattgttaagctccatgatttag
tttcatcacctgtaaaatgaggaaacatacattacttacttcatagattt
ggggtggagattggccatttatgcagcagatggagtgtaccaaataatgc
atgtccgcctcagtatcttcacatgtgttcacttctaaacaacctgttcc
taaccattcctcttccacattctttctttttccttcttttcttttctttt
ttgtagatatggtctccccaccccatcctgctcccatccccacccctctt
ccatccagtttcctccttccatctacatctgatgtctatttttgtttccc
cttctgagaaaaattcaagcaccctcccttgggccctccttgttaattag
attctttgtatctgttgattatagcatggttactatgtaccttatagcta
atatccacttatcactgagtatatatcatgcacatccttttggttgggtt
acctcactcaggatgatattggcctagctctgtccatttgcctgccaaaa
ttcatgattgtctttgtttataatggactgagttagtattccattgtgta
gatatatcacatttcctatctatctcattgagagacatttcagtggtttc
ctagttttctgactataaattaaagctgctattaaacatag
gaattccagtcccatacgtaaacatgataaaaaagcaatgtacaacaaac
cagtagccaacatcaaagtaaatggtgagaagctggaagcaatcccacta
aaatcagggactagacaaggatgcccaccttcatacctattcaatatact
atttgaagtcctagccagagcaattcaacaacaaaagaagatcaaggggg
tacaaattggaaaggaagaagtcaaaatatcactatttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagggaactcctaaacct
aataaacagcttcagtgaagtagctgtatataaaattaactcaaacaaga
caatggcctttctctacacaaaggataaacaggctgagaaagaaattagg
gaaacaacacccttcacaatagtcacaaataatataaaataccttggcgt
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctc
tgaagaaagaaattaaagaagatctcaggagatggaaagatctcccatgc
tcatgaactggcaggattaatatagtcaaaatggctatcttgccaaaagc
aatctacagattcaatgggatccccatcaaaattccaactcaattcttca
acaaattagaaagggaaatctgcaaattcatctggaataacaaaaaacct
agtatagcaagaactcttctcaatgataaaagaacctctggtggaatcat
catgcctgacctaaagctgtactacagagcaattgtgataaaaactgcat
ggtactggtatagtgacagacaagtagaccaacagaatagaattgaagac
ccagatatgaacccacacacctatggtccacttgatctttgacaggggag
ctaaaaccatccagtggaaaaaaagacagcattttcaacaaatagtgcct
ggcacccactggcatctatcttgtagaagagtgcgaatgatcctttccta
tctcttcatactaggtcaaccttagtgatagacttccacattaaaccaga
agaactgacctataaggagaagtgggcaaaagcctcgagatgccaagcga
aatcctgaatgacgaatgcttgccttaagatcaccactggaactctaccc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79406187_79407236
seq2: B6Ng01-171C12.b_73_1123 (reverse)

seq1  CTATGTTT-ATAGCAGCTTTATTTTTAATAGTCAG-AAACTA-GAAACAA  47
      |||||||| |||||||||||| |||  |||||||| |||||| ||||| |
seq2  CTATGTTTAATAGCAGCTTTAATTT--ATAGTCAGAAAACTAGGAAACCA  48

seq1  CTGAAATGTCTCTCAATTGAAGAATAGATAAAGAAAATGTGATATATCTA  97
      |||||||||||||||| |||   ||||||  || ||||||||||||||||
seq2  CTGAAATGTCTCTCAA-TGA--GATAGAT--AGGAAATGTGATATATCTA  93

seq1  CACAATGGAATACT-ACTCAG-CCATTATAAACAAAGAC-ATCATGAATT  144
      |||||||||||||| |||||| ||||||||||||||||| ||||||||||
seq2  CACAATGGAATACTAACTCAGTCCATTATAAACAAAGACAATCATGAATT  143

seq1  TT-GCAGGCAAATGGACAGAGCTAGG-CAATATCATCCTGAGTGAGGTAA  192
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGGCAGGCAAATGGACAGAGCTAGGCCAATATCATCCTGAGTGAGGTAA  193

seq1  CCCAACCCAAAAGGATGTGCATGATATATACTCAGTGATAAGTGGATATT  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAA-CCAAAAGGATGTGCATGATATATACTCAGTGATAAGTGGATATT  242

seq1  AGCTATAAGGTACATAGTAACCATGCTATAATCAACAGATACAAAGAATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAGGTACATAGTAACCATGCTATAATCAACAGATACAAAGAATC  292

seq1  TAATTAACAAGGAGGGCCCAAGGGAGGGTGCTTGAATTTTTCTCAGAAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAAGGAGGGCCCAAGGGAGGGTGCTTGAATTTTTCTCAGAAGG  342

seq1  GGAAAC-AAAATAGACATCAGATGTAGATGGAAGGAGGAAACTGGATGGA  391
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAAATAGACATCAGATGTAGATGGAAGGAGGAAACTGGATGGA  392

seq1  AGAGGGGTGGGGATGGGAGCAGGATGGGGTGGGGAGACCATATCTACAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTGGGGATGGGAGCAGGATGGGGTGGGGAGACCATATCTACAAA  442

seq1  AAAGAAAAGAAAAGAAGGAAAAAGAAAGAATGTGGAAGAGGAATGGTTAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAGAAGGAAAAAGAAAGAATGTGGAAGAGGAATGGTTAG  492

seq1  GAACAGGTTGTTTAGAAGTGAACACATGTGAAGATACTGAGGCGGACATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGTTGTTTAGAAGTGAACACATGTGAAGATACTGAGGCGGACATG  542

seq1  CATTATTTGGTACACTCCATCTGCTGCATAAATGGCCAATCTCCACCCCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGGTACACTCCATCTGCTGCATAAATGGCCAATCTCCACCCCA  592

seq1  AATCTATGAAGTAAGTAATGTATGTTTCCTCATTTTACAGGTGATGAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAAGTAAGTAATGTATGTTTCCTCATTTTACAGGTGATGAAAC  642

seq1  TAAATCATGGAGCTTAACAATTTACCTGCAGTTATACAGTGTTTGGGGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATGGAGCTTAACAATTTACCTGCAGTTATACAGTGTTTGGGGGT  692

seq1  GATATCTAAACCCAGGCTGTATCCTATACCCAAGGTTTTCAGTCTTCACC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAAACCCAGGCTGTATCCTATACCCAAGGTTTTCAGTCTTCACC  742

seq1  TCTGCTATGGCTTGAATATAAAATCAGCTATATACACCTATGTATATAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGGCTTGAATATAAAATCAGCTATATACACCTATGTATATAAC  792

seq1  TATGGATTTGAGGCTCAGGGATCGGGTGCAAGGTGATGAAATATTGCTAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTTGAGGCTCAGGGATCGGGTGCAAGGTGATGAAATATTGCTAA  842

seq1  GTTATTGGATTCTGGAGTCTTTGATCTCATCAGATGCCTGATCCATTGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGATTCTGGAGTCTTTGATCTCATCAGATGCCTGATCCATTGGT  892

seq1  GAATATCACCTGTGAGTGATAAAGATCAGGAGATGGGACCTAATTGGTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCACCTGTGAGTGATAAAGATCAGGAGATGGGACCTAATTGGTGG  942

seq1  AAGTGGGTCTTTCTACGATGGAATTGATAAGACATGAAGACATACTCCCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTCTTTCTACGATGGAATTGATAAGACATGAAGACATACTCCCT  992

seq1  GACTGGATCTAGCCTAAGCCCTTCTTGGATTCCAGCTTTCTCTTCTTGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATCTAGCCTAAGCCCTTCTTGGATTCCAGCTTTCTCTTCTTGTC  1042

seq1  ATTCGTGAG  1050
      |||||||||
seq2  ATTCGTGAG  1051