BAC Information

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BAC

Clone NameB6Ng01-171D04
Chromosome8 (Build37)
Map Location 49,496,086 - 49,611,626
singlet/doubletdoublet
Overlap geneOdz3
Upstream gene4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171D04.bB6Ng01-171D04.g
ACCGA000145GA000146
length1,088729
definitionB6Ng01-171D04.b B6Ng01-171D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,610,526 - 49,611,626)(49,496,086 - 49,496,707)
sequence
gaattccaatatataagaaattgttatgatgctgtttattttttacaaat
aaatgaaggagaccatgagatacccttctcccctaaaattctgtatgtgc
attcaggaagtacacagggcaaaagtaagcaatggagacactttaaaatg
gaatctgtgccgcagtccctgcatatggccgataatagcgatacgtgttt
ggctatatttttatcagcaattattttgttttgagaattgacttatgaca
gaattctgaggccattgtgaagatggctttcgcttatttcagccgtgctc
ttttttttttagtgtaattggcactagaaataaagcagctttcagtaatt
acattgtatggatgaaaattcttgatttttctgtggagtcaaatcaatac
tgaagtttcactatcacagtctctgtaaatgaaggtttcgggtcaggagt
ggggatgcaggagccattggcagggctcactgttcccagaaatttttcct
agcaatgcagtaggccagggtcccagtgacactcttgagaattataattg
ccttgtgccaacgtgggaaaggagcatttttaaaatataatttttgagac
ttaattttctagtcctttttcagtaactgatatactaagtaacttgtttt
caaaggatatatccacctatatgtatttgaattattagtaaaaaaaaatt
agtattagtgaaaatgaaaaacaaatttaccttttgactgtatttgggag
attgtatataaagacagcaggagttgtgctctgagcagtatgctgtagta
tctctttgcattttagaataaaacacataggtactttgtgaaattgtctt
catctggttttacctctgggtttctgtgatggatttcccgggcaatcctg
aacagaggcgtggcttaatagtcaaataacagtgatgtcacttgaaggcc
attgtttcaaggaagagagctttggcatcaggggagtgatttgagttcgt
actgatcatttcataagtttgaaagctgaagaatttctgtttgtcccact
aagcctactgttggaagttgttttatgctcaaaatata

gaattcacacccattacagtaaataaagtaaaaaacaaaaaacaaaaacg
aacaaacccagtttagctaacctgataggatatcagattctttgaactgt
ttttctttatacctgtaaacaaatgctttcctcggtcttgatcagagaga
agctcttctctgtaatgaacagtggtgaatgcacaaactcattgctggct
attcaagttactgagattaaaggataattgcaagttcaggcataaataag
acatttcttccatgaccaacacgggctgaaggaaaactgctaaaagaggt
ggcagaaaaacaacaacaacaacaacaacaacaacaacaacaacaacaca
aacctaagagccaaaaaaacagctaaaggtctgtggaatcctatcctagc
acatgagccagcctatcagctcctagcagctgcgcatgctcgagctggtt
ccgcatcagctgtcagtcatgtcaagagtcagccatggataggagcgaag
ctcattgttcccgccccctctccgtggagctactggctactgatgaattc
tgggaaaagtaaagttgtcttcttcaatgacgcactcagtggtgagagtt
cccatcccatggtcacccagatggctctggctaagcttcgtggctcacaa
aacaaaacaaaataaggcatgaacataagaatcaggcttgtagggatgag
gagtgtatgcgtgtgtggtggggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49610526_49611626
seq2: B6Ng01-171D04.b_43_1130 (reverse)

seq1  TATATTTTTGAGCATAAAACAACTCTCCAAACAGGTTAAGCTTTAGTGGG  50
      |||| ||||||||||||||||||| ||| |||||  || || ||||||||
seq2  TATA-TTTTGAGCATAAAACAACT-TCC-AACAG--TAGGC-TTAGTGGG  44

seq1  AACAAACAGAAATTCTCCAAGCCTTTCAAAACTAATGAAATGAATCAGTA  100
       ||||||||||||||| ||   ||||| ||||| |||||||| |||||||
seq2  -ACAAACAGAAATTCTTCA--GCTTTC-AAACTTATGAAATG-ATCAGTA  89

seq1  CGAACCTCAAAATCACTCCCCTGATGCCCAAAGCTCTCTTCCCTGAAACA  150
      |||| ||| ||||||||||||||||| ||||||||||||||| |||||||
seq2  CGAA-CTC-AAATCACTCCCCTGATG-CCAAAGCTCTCTTCCTTGAAACA  136

seq1  ATGGCC-TCAAGTGACATCACCTGTTATTTGACTATTAAGCCACGCCTCT  199
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGGCCTTCAAGTGACATCA-CTGTTATTTGACTATTAAGCCACGCCTCT  185

seq1  G-TCAGGATTGCCC-GGAAATCCATCACAGAAACCCAGAGGTAAAACCAG  247
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTCAGGATTGCCCGGGAAATCCATCACAGAAACCCAGAGGTAAAACCAG  235

seq1  ATGAAGACAATTTCACAAAGTACCTATGTGTTTTATTCTAAAATGCAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAATTTCACAAAGTACCTATGTGTTTTATTCTAAAATGCAAAG  285

seq1  AGATACTACAGCATACCTGCTCAGAGCACAACTCCTGCTGTCTTTATATA  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATACTACAGCATA-CTGCTCAGAGCACAACTCCTGCTGTCTTTATATA  334

seq1  CAATCTCCCAAATACAGTCAAAAGGTAAATTTGTTTTTCATTTTCACTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCCAAATACAGTCAAAAGGTAAATTTGTTTTTCATTTTCACTAA  384

seq1  TACTAATTTTTTTTTACTAATAATTCAAATACATATAGGTGGATATATCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTTTTTTTACTAATAATTCAAATACATATAGGTGGATATATCC  434

seq1  TTTGAAAACAAGTTACTTAGTATATCAGTTACTGAAAAAGGACTAGAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACAAGTTACTTAGTATATCAGTTACTGAAAAAGGACTAGAAAA  484

seq1  TTAAGTCTCAAAAATTATATTTTAAAAATGCTCCTTTCCCACGTTGGCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTCAAAAATTATATTTTAAAAATGCTCCTTTCCCACGTTGGCAC  534

seq1  AAGGCAATTATAATTCTCAAGAGTGTCACTGGGACCCTGGCCTACTGCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATTATAATTCTCAAGAGTGTCACTGGGACCCTGGCCTACTGCAT  584

seq1  TGCTAGGAAAAATTTCTGGGAACAGTGAGCCCTGCCAATGGCTCCTGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAAAAATTTCTGGGAACAGTGAGCCCTGCCAATGGCTCCTGCAT  634

seq1  CCCCACTCCTGACCCGAAACCTTCATTTACAGAGACTGTGATAGTGAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCTGACCCGAAACCTTCATTTACAGAGACTGTGATAGTGAAAC  684

seq1  TTCAGTATTGATTTGACTCCACAGAAAAATCAAGAATTTTCATCCATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATTGATTTGACTCCACAGAAAAATCAAGAATTTTCATCCATACA  734

seq1  ATGTAATTACTGAAAGCTGCTTTATTTCTAGTGCCAATTACACTAAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTACTGAAAGCTGCTTTATTTCTAGTGCCAATTACACTAAAAAA  784

seq1  AAAAGAGCACGGCTGAAATAAGCGAAAGCCATCTTCACAATGGCCTCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCACGGCTGAAATAAGCGAAAGCCATCTTCACAATGGCCTCAGA  834

seq1  ATTCTGTCATAAGTCAATTCTCAAAACAAAATAATTGCTGATAAAAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCATAAGTCAATTCTCAAAACAAAATAATTGCTGATAAAAATAT  884

seq1  AGCCAAACACGTATCGCTATTATCGGCCATATGCAGGGACTGCGGCACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACACGTATCGCTATTATCGGCCATATGCAGGGACTGCGGCACAG  934

seq1  ATTCCATTTTAAAGTGTCTCCATTGCTTACTTTTGCCCTGTGTACTTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTTAAAGTGTCTCCATTGCTTACTTTTGCCCTGTGTACTTCCT  984

seq1  GAATGCACATACAGAATTTTAGGGGAGAAGGGTATCTCATGGTCTCCTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACATACAGAATTTTAGGGGAGAAGGGTATCTCATGGTCTCCTTC  1034

seq1  ATTTATTTGTAAAAAATAAACAGCATCATAACAATTTCTTATATATTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTAAAAAATAAACAGCATCATAACAATTTCTTATATATTGGA  1084

seq1  ATTC  1101
      ||||
seq2  ATTC  1088


seq1: chr8_49496086_49496707
seq2: B6Ng01-171D04.g_171_793

seq1  TTATACCTGTAAACAAATGCTTTCCTCGGTCTTGATCAGAGAGAAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTGTAAACAAATGCTTTCCTCGGTCTTGATCAGAGAGAAGCTCT  50

seq1  TCTCTGTAATGAACAGTGGTGAATGCACAAACTCATTGCTGGCTATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAATGAACAGTGGTGAATGCACAAACTCATTGCTGGCTATTCAA  100

seq1  GTTACTGAGATTAAAGGATAATTGCAAGTTCAGGCATAAATAAGACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGATTAAAGGATAATTGCAAGTTCAGGCATAAATAAGACATTT  150

seq1  CTTCCATGACCAACACGGGCTGAAGGAAAACTGCTAAAAGAGGTGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGACCAACACGGGCTGAAGGAAAACTGCTAAAAGAGGTGGCAGA  200

seq1  AAAACAACAACAACAACAACAACAACAACAACAACAACAACACAAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAACAACAACAACAACAACAACAACAACACAAACCTA  250

seq1  AGAGCCAAAAAAACAGCTAAAGGTCTGTGGAATCCTATCCTAGCACATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAAAAAACAGCTAAAGGTCTGTGGAATCCTATCCTAGCACATGA  300

seq1  GCCAGCCTATCAGCTCCTAGCAGCTGCGCATGCTCGAGCTGGTTCCGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTATCAGCTCCTAGCAGCTGCGCATGCTCGAGCTGGTTCCGCAT  350

seq1  CAGCTGTCAGTCATGTCAAGAGTCAGCCATGGATAGGAGCGAAGCTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCAGTCATGTCAAGAGTCAGCCATGGATAGGAGCGAAGCTCATT  400

seq1  GTTCCCGCCCCCTCTCCGTGGAGCTACTGGCTACTGATGAATTCTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGCCCCCTCTCCGTGGAGCTACTGGCTACTGATGAATTCTGGGAA  450

seq1  AAGTAAAGTTGTCTTCTTCAATGACGCACTCAGTGGTGAGAGTTCCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGTTGTCTTCTTCAATGACGCACTCAGTGGTGAGAGTTCCCATC  500

seq1  CCATGGTCACCCAGATGGCTCTGGCTAAGCTTCGTGGCTCACAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCACCCAGATGGCTCTGGCTAAGCTTCGTGGCTCACAAAACAAA  550

seq1  ACAAAATAAGGCATGAACATAAGAATCAGGCTTGTAGGGATGAGGAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAGGCATGAACATAAGAATCAGGCTTGTAGGGATGAGGAGTGT  600

seq1  ATGCGTGTGTGGT-GGGGGAGGA  622
      ||||||||||||| |||||||||
seq2  ATGCGTGTGTGGTGGGGGGAGGA  623


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