BAC Information

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BAC

Clone NameB6Ng01-171M07
Chromosome8 (Build37)
Map Location 104,025,127 - 104,191,831
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042086, LOC100042092, LOC384895
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M07.bB6Ng01-171M07.g
ACCGA000561GA000562
length1,1011,152
definitionB6Ng01-171M07.b B6Ng01-171M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,025,127 - 104,026,216)(104,190,661 - 104,191,831)
sequence
gaattcagattatactcctccagtttcaaccctgtttgaatgtagccatc
aaattgaactcaaggttgcctaaggcatatcaggttaagttgtgtgtagc
ttcagtttgtcaagataggacaagttacttctcatagtagacacaaacca
aacaaaaccaaaaatggtcctcaaattatactcacttaagatctaaagtt
aaactgcgtgtatgtacttatttttctgtttaaaccaaagtctactttct
tttaacatactgaacctgtttcttaggacttctggttactttcatcttgt
tattcattctatagaagaaagtttccagtgctactgaggcagatgggata
ggaataggagaaagcacacttctattctaagtttcaagtagttcatgtta
gtcttggtttcagaggaaagactggaattggttagctgaccctaaaacaa
ttgagtgagaaataagagcacatgtatatcttactggttagccaccaata
tgtataagatacttacccagaaactatacaattcttccttaatgaatttg
gccagatgatgtttgaattctatttgcaatgtagaaatgtattaggagaa
gcaccacatataaaaacaaagtaaaaaatgtaaagattttcatgaattaa
aaatacaatatatacaaataacaacccatcttttatttaatgtaacatag
agttaattgcatctcaaaacttcattatcatcagtcaaataggaaaatta
aagttctatcaataaatgacgatgttggtagatatttgatctttgataca
catgaagatctaaataaacactggtctagactcttttagttataattcac
atctttttcatttgtggatatttctcttcattattatttttaatatctca
accatgcagaaaaatgtcaaaggcaaatcagtgataaattactacaggga
caacactaaacatatagattaaatgtagtaaagcaattattatataagat
ttcagcagcctttttcttaaacctgaagttgcagttagacctatatacaa
tgtttcatgggggcctggaaagaatgtctgagttataagaagcaattggc
t

gaattctatattggactcagatttagcactgttgatggtgggacaaatta
agtacaaaaggagagaagtagagaagaaattaattaaaaagtaacagttt
gtcgtcatgtaccagggtggcatataaggagtgtgaaatctatcttgtaa
gtgataaggaactacacagtgataaggaaggtttgggaagttggagacag
tagttaagtaacaatgctaataaaggaagtagaaaacaagaagggaaaac
aggaagaagatggaggatagagaagaaaaggaaggaaaaataaatgactt
attgaaaacatactatgtagaaaggctatttcagtagaacctggtcttta
gaaactcaatttgaaaataaatatctgatgaaactgagaatttgttcaaa
atgttcaagctgggttttttgatgcaagcatgaaggaatccaggcatttg
agaagtaccagtagaatcaagatacatagccacacttagatacatagtaa
gattgagggcaggctcaattacataagcacctatattttgtcacatataa
gtttacttattgcacagttcatcagaaccaatgtaggattttagagtttg
tatcttccctgattctcctacttactttcagtcaccttgctgttttatat
ttagaagcttccttgcagactgaatgctcattgaggagttacaaatcaca
gaattaccgctaccagaccctggtgtcatagagtgatacagtaatccagg
gataaaggtaaattcaggttagatttcttcttttttatacagtagtttca
gcttaccagctacactaggcacgtgttttcattcagtcttcagatattgg
gaaaaataaattattttagatttgctgaaaggatgtccatctttcagcct
aacaggataataagatatgggtcatggggaatgactctttctgtctctat
ttcttttcctgtccttgcctttttctcttctgtcccatccccctctctct
ctgtctctctcagccctatcaatctcctctcctctcttgttctcatgaag
ttgcatgactatgcctatgtgtaaccgttcctctgggtttacatgttatt
caatgtccatggatacatcggtttatggcctgaaggcgagtgctcaaaat
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104025127_104026216
seq2: B6Ng01-171M07.b_43_1143

seq1  GAATTCAGATTATACTCCTCCAGTTTCAACCCTGTTTGAATGTAGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTATACTCCTCCAGTTTCAACCCTGTTTGAATGTAGCCATC  50

seq1  AAATTGAACTCAAGGTTGCCTAAGGCATATCAGGTTAAGTTGTGTGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAACTCAAGGTTGCCTAAGGCATATCAGGTTAAGTTGTGTGTAGC  100

seq1  TTCAGTTTGTCAAGATAGGACAAGTTACTTCTCATAGTAGACACAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGTCAAGATAGGACAAGTTACTTCTCATAGTAGACACAAACCA  150

seq1  AACAAAACCAAAAATGGTCCTCAAATTATACTCACTTAAGATCTAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCAAAAATGGTCCTCAAATTATACTCACTTAAGATCTAAAGTT  200

seq1  AAACTGCGTGTATGTACTTATTTTTCTGTTTAAACCAAAGTCTACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCGTGTATGTACTTATTTTTCTGTTTAAACCAAAGTCTACTTTCT  250

seq1  TTTAACATACTGAACCTGTTTCTTAGGACTTCTGGTTACTTTCATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATACTGAACCTGTTTCTTAGGACTTCTGGTTACTTTCATCTTGT  300

seq1  TATTCATTCTATAGAAGAAAGTTTCCAGTGCTACTGAGGCAGATGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCTATAGAAGAAAGTTTCCAGTGCTACTGAGGCAGATGGGATA  350

seq1  GGAATAGGAGAAAGCACACTTCTATTCTAAGTTTCAAGTAGTTCATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGAGAAAGCACACTTCTATTCTAAGTTTCAAGTAGTTCATGTTA  400

seq1  GTCTTGGTTTCAGAGGAAAGACTGGAATTGGTTAGCTGACCCTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTTCAGAGGAAAGACTGGAATTGGTTAGCTGACCCTAAAACAA  450

seq1  TTGAGTGAGAAATAAGAGCACATGTATATCTTACTGGTTAGCCACCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGAGAAATAAGAGCACATGTATATCTTACTGGTTAGCCACCAATA  500

seq1  TGTATAAGATACTTACCCAGAAACTATACAATTCTTCCTTAATGAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGATACTTACCCAGAAACTATACAATTCTTCCTTAATGAATTTG  550

seq1  GCCAGATGATGTTTGAATTCTATTTGCAATGTAGAAATGTATTAGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGATGTTTGAATTCTATTTGCAATGTAGAAATGTATTAGGAGAA  600

seq1  GCACCACATATAAAAACAAAGTAAAAAATGTAAAGATTTTCATGAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATATAAAAACAAAGTAAAAAATGTAAAGATTTTCATGAATTAA  650

seq1  AAATACAATATATACAAATAACAACCCATCTTTTATTTAATGTAACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATATATACAAATAACAACCCATCTTTTATTTAATGTAACATAG  700

seq1  AGTTAATTGCATCTCAAAACTTCATTATCATCAGTCAAATAGGAAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTGCATCTCAAAACTTCATTATCATCAGTCAAATAGGAAAATTA  750

seq1  AAGTTCTATCAATAAATGACGATGTTGGTAGATATTTGATCTTTGATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATCAATAAATGACGATGTTGGTAGATATTTGATCTTTGATACA  800

seq1  CATGAAGATCTAAATAAACACTGGTCTAGACTCTTTTAGTTATAATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATCTAAATAAACACTGGTCTAGACTCTTTTAGTTATAATTCAC  850

seq1  ATCTTTTTCATTTGTGGATATTTCTCTTCATTATTATTTTTAATATCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCATTTGTGGATATTTCTCTTCATTATTATTTTTAATATCTCA  900

seq1  ACCATGCAG-AAAATGTCAAAGGCAAATCAGTGATAAATTACTACA-GGA  948
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  ACCATGCAGAAAAATGTCAAAGGCAAATCAGTGATAAATTACTACAGGGA  950

seq1  CAACACTAAACATATAGATTAAATGTAAGTAAGCAAT--ATATATAAGAA  996
      |||||||||||||||||||||||||||   |||||||   ||||||||| 
seq2  CAACACTAAACATATAGATTAAATGTAGTAAAGCAATTATTATATAAGAT  1000

seq1  TTCAGCAGCC-TTTTCTTAAA-CTGAAG-TGCAGTTAGA-CTATAACAAA  1042
      |||||||||| |||||||||| |||||| |||||||||| |||||   ||
seq2  TTCAGCAGCCTTTTTCTTAAACCTGAAGTTGCAGTTAGACCTATATACAA  1050

seq1  TGTTTCATGGGGG-CTGGAGAGAAATGTCTGAG-TATAAG-AGC-ATTGG  1088
      ||||||||||||| ||||| || |||||||||| |||||| ||| |||||
seq2  TGTTTCATGGGGGCCTGGAAAG-AATGTCTGAGTTATAAGAAGCAATTGG  1099

seq1  CT  1090
      ||
seq2  CT  1101


seq1: chr8_104190661_104191831
seq2: B6Ng01-171M07.g_65_1216 (reverse)

seq1  TAATTTTGAGCACTGCCATTAAGGCATTAACAGGGATGATACCACAATTG  50
      ||||||||||||||  | || ||||  ||| |  ||||   |||    ||
seq2  TAATTTTGAGCACTCGCCTTCAGGCCATAA-ACCGATGTATCCA----TG  45

seq1  GGACCATTTAAAATAACA-GTAAACACAGAGGAACGTTTACACATAGGCA  99
      |   ||||   ||||||| |||||| |||||||||| |||||||||||||
seq2  G--ACATT--GAATAACATGTAAACCCAGAGGAACGGTTACACATAGGCA  91

seq1  TATTCATGCACACTCATGGAGAACAAGAGAGGGAGAGGGAGATGTGATAG  149
      || |||||||   |||| |||||||||||| ||||| |||||| ||||||
seq2  TAGTCATGCAACTTCAT-GAGAACAAGAGA-GGAGA-GGAGAT-TGATAG  137

seq1  GGCTGGAAGAGAAGGACAGGAAGAGGAAGAGGGGGATGGGAACAAGAAAG  199
      |||||  |||||  |||||  ||||  ||||||||||||| |||   |||
seq2  GGCTG--AGAGA--GACAG--AGAG--AGAGGGGGATGGG-ACA--GAAG  176

seq1  AGAAAAA-GCAAGGAACAGGAAAAGAAATAGAGACAGAAAGAGTCATTCC  248
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGCAAGG-ACAGGAAAAGAAATAGAGACAGAAAGAGTCATTCC  225

seq1  CAATGACCAATATC-TATTAT-CTGTTAGGCTGAAAGATGGACAT-CTTT  295
      | |||||| ||||| |||||| ||||||||||||||||||||||| ||||
seq2  CCATGACCCATATCTTATTATCCTGTTAGGCTGAAAGATGGACATCCTTT  275

seq1  CAGCAAATCTAAAATAATTTATTTTT-CCAATATCTGAAGACTGAATGAA  344
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCAAATCTAAAATAATTTATTTTTCCCAATATCTGAAGACTGAATGAA  325

seq1  AACACGTGCCTAGTGTAGCTGGTAAGCTGAAACTACTGTATAAAAAAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGCCTAGTGTAGCTGGTAAGCTGAAACTACTGTATAAAAAAGAA  375

seq1  GAAATCTAACCTGAATTTACCTTTATCCCTGGATTACTGTATCACTCTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTAACCTGAATTTACCTTTATCCCTGGATTACTGTATCACTCTAT  425

seq1  GACACCAGGGTCTGGTAGCGGTAATTCTGTGATTTGTAACTCCTCAATGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGGTCTGGTAGCGGTAATTCTGTGATTTGTAACTCCTCAATGA  475

seq1  GCATTCAGTCTGCAAGGAAGCTTCTAAATATAAAACAGCAAGGTGACTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTCTGCAAGGAAGCTTCTAAATATAAAACAGCAAGGTGACTGA  525

seq1  AAGTAAGTAGGAGAATCAGGGAAGATACAAACTCTAAAATCCTACATTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTAGGAGAATCAGGGAAGATACAAACTCTAAAATCCTACATTGG  575

seq1  TTCTGATGAACTGTGCAATAAGTAAACTTATATGTGACAAAATATAGGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGAACTGTGCAATAAGTAAACTTATATGTGACAAAATATAGGTG  625

seq1  CTTATGTAATTGAGCCTGCCCTCAATCTTACTATGTATCTAAGTGTGGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAATTGAGCCTGCCCTCAATCTTACTATGTATCTAAGTGTGGCT  675

seq1  ATGTATCTTGATTCTACTGGTACTTCTCAAATGCCTGGATTCCTTCATGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTGATTCTACTGGTACTTCTCAAATGCCTGGATTCCTTCATGC  725

seq1  TTGCATCAAAAAACCCAGCTTGAACATTTTGAACAAATTCTCAGTTTCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCAAAAAACCCAGCTTGAACATTTTGAACAAATTCTCAGTTTCAT  775

seq1  CAGATATTTATTTTCAAATTGAGTTTCTAAAGACCAGGTTCTACTGAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTATTTTCAAATTGAGTTTCTAAAGACCAGGTTCTACTGAAAT  825

seq1  AGCCTTTCTACATAGTATGTTTTCAATAAGTCATTTATTTTTCCTTCCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTACATAGTATGTTTTCAATAAGTCATTTATTTTTCCTTCCTT  875

seq1  TTCTTCTCTATCCTCCATCTTCTTCCTGTTTTCCCTTCTTGTTTTCTACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTATCCTCCATCTTCTTCCTGTTTTCCCTTCTTGTTTTCTACT  925

seq1  TCCTTTATTAGCATTGTTACTTAACTACTGTCTCCAACTTCCCAAACCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTAGCATTGTTACTTAACTACTGTCTCCAACTTCCCAAACCTT  975

seq1  CCTTATCACTGTGTAGTTCCTTATCACTTACAAGATAGATTTCACACTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCACTGTGTAGTTCCTTATCACTTACAAGATAGATTTCACACTCC  1025

seq1  TTATATGCCACCCTGGTACATGACGACAAACTGTTACTTTTTAATTAATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCCACCCTGGTACATGACGACAAACTGTTACTTTTTAATTAATT  1075

seq1  TCTTCTCTACTTCTCTCCTTTTGTACTTAATTTGTCCCACCATCAACAGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTACTTCTCTCCTTTTGTACTTAATTTGTCCCACCATCAACAGT  1125

seq1  GCTAAATCTGAGTCCAATATAGAATTC  1171
      |||||||||||||||||||||||||||
seq2  GCTAAATCTGAGTCCAATATAGAATTC  1152


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