BAC Information

Click to search

BAC

Clone NameB6Ng01-174H22
Chromosome8 (Build37)
Map Location 54,028,181 - 54,029,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174H22.bB6Ng01-174H22.g
ACCGA002559GA002560
length1,2201,140
definitionB6Ng01-174H22.b B6Ng01-174H22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataactcacttaaagaaatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcga
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaaaagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacaccaaa
tgcactaaataaagatagaatactaaaaagcagtaagggaaaaaggtcaa
gtaacatataaaggcaagcctatcagaattacaccagatttttcaccaga
gactatgaaagccagaagagcctggacagatgtttatacagacactaaga
gaacacaaatgccagcccagggctactaatacccagccaaactctcaatt
taccatagatgggagaaaccaaaagtattccacgacaaaactaaaatttc
acccattatcctctccacgaaatccaggcccttcaaaggataataaacag
aaaaaaaaccaattacaaaggacgggaaaccacgcccctagaaaaaacaa
gaagataatcccctcaacaaacctaaaagaaagacaaccaccaagaacca
gaaatgccactttaaacaactaaaaaataaacaggaaagccaacaattta
ccttttccttgaatattcctcttaatattcattggaacttcaattccccc
atgaaagaactaggacttaaccgaacctgcttaacccaagacgtaggaac
acctacacaattttcctgcg
gaattcttggcagtcaagcttcctaagagatcctgatcctgtgtgaccaa
gctcctgcgatgctgcgatcctgaaatactgagatcctgggcatgctaca
ttgcctggaaagtgatacctcctctggggaccaaggagctgtcagctgtg
ttggaaaccaaggtagactaacaaagaccagaaggaacctaagccacatg
ttgggcaggttttctgtgtccctgctgggataggaccctcattggttttt
ttggaacatatgttccattcgactccccagtgatgctaaaatcctgggtg
tgctagggtgcttgcagcatggagagtcctctggggacctttatttcatg
ctcaaggtggcctcaggctggagcagactggaaggtcaggaacagttttc
aaaaacctgtttccaagtgtcaagtagcaacaagcacattttcctgattc
agtggccactcaaagacaaactccaagacggagcagcttgaaataacaga
gattctacaaaggattgcttagtaatataaaccaacactcttctcttcct
tgaaaatgaagatccactactctctaagatgtcactgtgaacgtgtctag
gagatcctgagtgctgtataagtataatcattgatgttccaaattcaatc
gaatttatatcaggagtgaatttttaatttggatagaaatacaacaacaa
caaaacaacaaaagaaagtaagaaagatgtaatcttgagcttatcttatt
ttcaaaaagtttttactttttagttttcaaagttttattcctacacatga
cacatttttctcttactataaacattttttgagtaatctcttgggtttct
acccttcaggaggtcatgcttttcaggatagtgagcatgacttatttatt
ttaacaactcccaagctggctctaattactgtcacatttagaaattcaaa
cttcttaactgagcagtgaacacagttaggtcagaggcacttgcctgtga
ctttttttaaaagatggcttagtttgatatttgaagtgatggaactaagg
tgataagatcaccgaagggagaaaacctttaaggccccggattccttagt
ctgtggcattcgaacacatgattcttaggcaagcatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54028181_54029316
seq2: B6Ng01-174H22.g_67_1206 (reverse)

seq1  TAAAATGCTTGC--TAGGATCATGTGGTCTGATGCCCACAGAACTAGGAA  48
      ||||||||||||   || |||||||| ||  ||| |||||||   |||||
seq2  TAAAATGCTTGCCTAAGAATCATGTGTTCGAATG-CCACAGACTAAGGAA  49

seq1  TCTGGGGCTTTAAAATGTTTTCTCCTTTCTGTGATCTTTTATTCACCTTT  98
      || ||||| || ||| ||||||||| ||| ||||||||    ||||| ||
seq2  TCCGGGGCCTT-AAAGGTTTTCTCCCTTCGGTGATCTT---ATCACC-TT  94

seq1  AGTTCAATCACCTTCAATTATCAAACTAAGCCATCTTTTAAAAAAAAGTC  148
      ||||| |||| |||||| ||||||||||||||||||||| ||||||||||
seq2  AGTTCCATCA-CTTCAAATATCAAACTAAGCCATCTTTT-AAAAAAAGTC  142

seq1  ACA-GCAAGTGCCTCTGA-CTTACTGTG-TCACTGCTCAGTTAAG-AGTT  194
      ||| |||||||||||||| || |||||| |||||||||||||||| ||||
seq2  ACAGGCAAGTGCCTCTGACCTAACTGTGTTCACTGCTCAGTTAAGAAGTT  192

seq1  TGAATTCTTAAATGTGACAGTAATTAGAGCCAGCTTGGGAGTTGTTAAAA  244
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCTAAATGTGACAGTAATTAGAGCCAGCTTGGGAGTTGTTAAAA  242

seq1  TAAATAAGTCATGCTCACTATCCTTGAAAGCATGACCTCCTGAA-GGTAG  293
      ||||||||||||||||||||||||  |||||||||||||||||| |||||
seq2  TAAATAAGTCATGCTCACTATCCTGAAAAGCATGACCTCCTGAAGGGTAG  292

seq1  AAA-CCAAGAGATTACTC-AAAAATGTTTATAGTAAGAG-AAAATGTGTC  340
      ||| |||||||||||||| |||||||||||||||||||| ||||||||||
seq2  AAACCCAAGAGATTACTCAAAAAATGTTTATAGTAAGAGAAAAATGTGTC  342

seq1  ATGTGTAGGAAT-AAACTTTGAAAACTAAAAAGT-AAAACTTTTTGAAAA  388
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  ATGTGTAGGAATAAAACTTTGAAAACTAAAAAGTAAAAACTTTTTGAAAA  392

seq1  TAAGATAAGCTCAAGATTACATCTTTCTTACTTTCTTTTGTTGTTTTGTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAGCTCAAGATTACATCTTTCTTACTTTCTTTTGTTGTTTTGTT  442

seq1  GTTGTTGTATTTCTATCCAAATTAAAAATTCACTCCTGATATAAATTCGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTATTTCTATCCAAATTAAAAATTCACTCCTGATATAAATTCGA  492

seq1  TTGAATTTGGAACATCAATGATTATACTTATACAGCACTCAGGATCTCCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGGAACATCAATGATTATACTTATACAGCACTCAGGATCTCCT  542

seq1  AGACACGTTCACAGTGACATCTTAGAGAGTAGTGGATCTTCATTTTCAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGTTCACAGTGACATCTTAGAGAGTAGTGGATCTTCATTTTCAAG  592

seq1  GAAGAGAAGAGTGTTGGTTTATATTACTAAGCAATCCTTTGTAGAATCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAGTGTTGGTTTATATTACTAAGCAATCCTTTGTAGAATCTC  642

seq1  TGTTATTTCAAGCTGCTCCGTCTTGGAGTTTGTCTTTGAGTGGCCACTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCAAGCTGCTCCGTCTTGGAGTTTGTCTTTGAGTGGCCACTGA  692

seq1  ATCAGGAAAATGTGCTTGTTGCTACTTGACACTTGGAAACAGGTTTTTGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAAATGTGCTTGTTGCTACTTGACACTTGGAAACAGGTTTTTGA  742

seq1  AAACTGTTCCTGACCTTCCAGTCTGCTCCAGCCTGAGGCCACCTTGAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTCCTGACCTTCCAGTCTGCTCCAGCCTGAGGCCACCTTGAGCA  792

seq1  TGAAATAAAGGTCCCCAGAGGACTCTCCATGCTGCAAGCACCCTAGCACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAGGTCCCCAGAGGACTCTCCATGCTGCAAGCACCCTAGCACA  842

seq1  CCCAGGATTTTAGCATCACTGGGGAGTCGAATGGAACATATGTTCCAAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATTTTAGCATCACTGGGGAGTCGAATGGAACATATGTTCCAAAA  892

seq1  AAACCAATGAGGGTCCTATCCCAGCAGGGACACAGAAAACCTGCCCAACA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGAGGGTCCTATCCCAGCAGGGACACAGAAAACCTGCCCAACA  942

seq1  TGTGGCTTAGGTTCCTTCTGGTCTTTGTTAGTCTACCTTGGTTTCCAACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTAGGTTCCTTCTGGTCTTTGTTAGTCTACCTTGGTTTCCAACA  992

seq1  CAGCTGACAGCTCCTTGGTCCCCAGAGGAGGTATCACTTTCCAGGCAATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACAGCTCCTTGGTCCCCAGAGGAGGTATCACTTTCCAGGCAATG  1042

seq1  TAGCATGCCCAGGATCTCAGTATTTCAGGATCGCAGCATCGCAGGAGCTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCCCAGGATCTCAGTATTTCAGGATCGCAGCATCGCAGGAGCTT  1092

seq1  GGTCACACAGGATCAGGATCTCTTAGGAAGCTTGACTGCCAAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACAGGATCAGGATCTCTTAGGAAGCTTGACTGCCAAGAATTC  1140