BAC Information

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BAC

Clone NameB6Ng01-175G12
Chromosome8 (Build37)
Map Location 9,928,943 - 10,118,437
singlet/doubletdoublet
Overlap geneLig4, Abhd13, Tnfsf13b
Upstream geneTmem28
Downstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G12.bB6Ng01-175G12.g
ACCGA003219GA003220
length2331,063
definitionB6Ng01-175G12.b B6Ng01-175G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,118,205 - 10,118,437)(9,928,943 - 9,929,999)
sequence
gaattcatattatatatgtgtgtgtgtgcttttaagagaacgatttatat
tacatatgtgtgtgtgtgtgtgtatgcatgtctgtgtatgtgtgcatgcg
tgtaagagagagtcacagagaatttatactctgtgtgtgtgtgtgtgcat
gtatgtgtatgtgtgcatgtgtgtaagagagagtcacagagaatttatac
tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctctgaaactggagatcgtgagccatcatgtggatgctaggaatt
gatccaaacttccctgaaagagcaacaagtgctcctaaccactgagcaat
ctctctagcttctggggcggtttttttttttttttttaatttgaaattgt
aaggagaacgttcatagaaaaaaaaaaaagtaacattgtaccacctaaga
aatgattgttaaaataaaaaggaaaaacagtcagtaaacaaataaaacaa
aaatgattcccatgtgaaaaaaaaaaggttataagggacctaacacaaca
taaagaaaggagtctaatgaagggcaatgggaatattgaacaaatcacat
aaaacagagcatcccctggatcctcagtatccagcggatcagcagaggtc
ctggggcctgcgagatgctcggcaggtaaagagatgtgctgccaagccca
gcgcgcggagttacacacacacacacacacacacacacacacacacacac
atgcacacgcacacgcacacacacacacacgcgcgcacacacacacacgt
acaaaaacatagatctcagccctggtagtcatctcctttctggagctatg
aaatgggggcattggagcctggggaggctaaggaaagtctccagctatgt
gaagatgggttgggacagtcacggagcatggagagtaatgccagggacag
cctgaaacaaacaccaggtagggtgaagccctgggaatgacacagcctgg
gtgcactagagccaggacctgaggctcctccatgccacactttctaccca
tcaaatccaatactgccttcaagtgagtcttccttaactttaaaatacaa
aatattctaagggatgcgcatgaaagccgaatttttctcaaaccatttcc
ttttttttctctcttttttaaaaaaaaaaatatctttacaggactgcttt
agagtcatccacacagacaggctccaaatatgggaattccgcagttataa
aacagaggaactcctctacttataaaataattcatgatgggactccactg
catatatctaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_10118205_10118437
seq2: B6Ng01-175G12.b_44_276 (reverse)

seq1  ACACACACACACACACACACACACACACACAGAGTATAAATTCTCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGAGTATAAATTCTCTGTGA  50

seq1  CTCTCTCTTACACACATGCACACATACACATACATGCACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTACACACATGCACACATACACATACATGCACACACACACACA  100

seq1  CAGAGTATAAATTCTCTGTGACTCTCTCTTACACGCATGCACACATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTATAAATTCTCTGTGACTCTCTCTTACACGCATGCACACATACAC  150

seq1  AGACATGCATACACACACACACACACATATGTAATATAAATCGTTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCATACACACACACACACACATATGTAATATAAATCGTTCTCTT  200

seq1  AAAAGCACACACACACATATATAATATGAATTC  233
      |||||||||||||||||||||||||||||||||
seq2  AAAAGCACACACACACATATATAATATGAATTC  233

seq1: chr8_9928943_9929999
seq2: B6Ng01-175G12.g_65_1127

seq1  GAATTCTCTGAAACTGGAGATCGTGAGCCATCATGTGGATGCTAGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAACTGGAGATCGTGAGCCATCATGTGGATGCTAGGAATT  50

seq1  GATCCAAACTTCCCTGAAAGAGCAACAAGTGCTCCTAACCACTGAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACTTCCCTGAAAGAGCAACAAGTGCTCCTAACCACTGAGCAAT  100

seq1  CTCTCTAGCTTCTGGGGCGGTTTTTTTTTTTTTTTTTAATTTGAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCTTCTGGGGCGGTTTTTTTTTTTTTTTTTAATTTGAAATTGT  150

seq1  AAGGAGAACGTTCATAGAAAAAAAAAAAAGTAACATTGTACCACCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACGTTCATAGAAAAAAAAAAAAGTAACATTGTACCACCTAAGA  200

seq1  AATGATTGTTAAAATAAAAAGGAAAAACAGTCAGTAAACAAATAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGTTAAAATAAAAAGGAAAAACAGTCAGTAAACAAATAAAACAA  250

seq1  AAATGATTCCCATGTGAAAAAAAAAAGGTTATAAGGGACCTAACACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCCCATGTGAAAAAAAAAAGGTTATAAGGGACCTAACACAACA  300

seq1  TAAAGAAAGGAGTCTAATGAAGGGCAATGGGAATATTGAACAAATCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGGAGTCTAATGAAGGGCAATGGGAATATTGAACAAATCACAT  350

seq1  AAAACAGAGCATCCCCTGGATCCTCAGTATCCAGCGGATCAGCAGAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGCATCCCCTGGATCCTCAGTATCCAGCGGATCAGCAGAGGTC  400

seq1  CTGGGGCCTGCGAGATGCTCGGCAGGTAAAGAGATGTGCTGCCAAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCTGCGAGATGCTCGGCAGGTAAAGAGATGTGCTGCCAAGCCCA  450

seq1  GCGCGCGGAGTTACACACACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGGAGTTACACACACACACACACACACACACACACACACACACAC  500

seq1  ATGCACACGCACACGCACACACACACACACGCGCGCACACACACACACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACGCACACGCACACACACACACACGCGCGCACACACACACACGT  550

seq1  ACAAAAACATAGATCTCAGCCCTGGTAGTCATCTCCTTTCTGGAGCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATAGATCTCAGCCCTGGTAGTCATCTCCTTTCTGGAGCTATG  600

seq1  AAATGGGGGCATTGGAGCCTGGGGAGGCTAAGGAAAGTCTCCAGCTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGGCATTGGAGCCTGGGGAGGCTAAGGAAAGTCTCCAGCTATGT  650

seq1  GAAGATGGGTTGGGACAGTCACGGAGCATGGAGAGTAATGCCAGGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGTTGGGACAGTCACGGAGCATGGAGAGTAATGCCAGGGACAG  700

seq1  CCTGAAACAAACACCAGGTAGGGTGAAGCCCTGGGAATGACACAGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACAAACACCAGGTAGGGTGAAGCCCTGGGAATGACACAGCCTGG  750

seq1  GTGCACTAGAGCCAGGACCTGAGGCTCCTCCATGCCACAC-TTCTACCCA  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGCACTAGAGCCAGGACCTGAGGCTCCTCCATGCCACACTTTCTACCCA  800

seq1  TCAAATCCAATACTGCCTTCAAGTGAGTCTTCCTTAAC-TTAAAATACAA  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAATCCAATACTGCCTTCAAGTGAGTCTTCCTTAACTTTAAAATACAA  850

seq1  AATATTCTAAGGAATGCGCATGAAAGCCGATATTTTCTCAAACCATTTCC  898
      |||||||||||| |||||||||||||||||  ||||||||||||||||||
seq2  AATATTCTAAGGGATGCGCATGAAAGCCGAATTTTTCTCAAACCATTTCC  900

seq1  TTTTTTTTCTCTCTTTTTT--AAAAAAAAATATC-TTACA-GACTGCTTT  944
      |||||||||||||||||||  ||||||||||||| ||||| |||||||||
seq2  TTTTTTTTCTCTCTTTTTTAAAAAAAAAAATATCTTTACAGGACTGCTTT  950

seq1  AGAGTCATC--CACAGACA-GCTCCAAATTATGGAAATCCGCAGTTATAA  991
      |||||||||  |||||||| |||||||||   |||| |||||||||||||
seq2  AGAGTCATCCACACAGACAGGCTCCAAATATGGGAATTCCGCAGTTATAA  1000

seq1  AACAGGAAGAAACTCCTCTACTTAT-AAATAATTCATGATGGGACTCCAC  1040
      |||||  || ||||||||||||||| ||||||||||||||||||||||||
seq2  AACAG--AGGAACTCCTCTACTTATAAAATAATTCATGATGGGACTCCAC  1048

seq1  TGCATTATAATCTACCC  1057
      |||| ||| ||||||||
seq2  TGCA-TAT-ATCTACCC  1063