BAC Information

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BAC

Clone NameB6Ng01-175K18
Chromosome8 (Build37)
Map Location 128,540,762 - 128,677,837
singlet/doubletdoublet
Overlap geneKcnk1
Upstream geneTsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891
Downstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175K18.bB6Ng01-175K18.g
ACCGA003415GA003416
length1,0281,141
definitionB6Ng01-175K18.b B6Ng01-175K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,676,825 - 128,677,837)(128,540,762 - 128,541,873)
sequence
gaattcttgttaaaagagtttacaggacacccacgggagatggaaacaat
cggagggattggacattgtttctttttttcagggtggtaacagtcccaca
gatgtgcctgctcaaattcacccaattgcatgtattaacagagtgctggg
ttttctatgattcaatgaaataatttttttaaaatgcagttttaggagca
ctctgaatgtgaggacagactaggctacatgcatttcaacacctttgcat
aagaaacaagaagcaattagccccacaggtcacctaccagcagcttcaaa
gataatggtagatgaaagtattctcttggggtagtgtgtaaaggtgattc
cccaacaggcattttaacagtgtcgggaacgaggcagagctggctttatc
aggatcgatcctgggctaaaactgtgaatttttgaccgtgattaaaaatt
caactcaaacactaactgattttttttaaagtctcataaaaatgtaactg
actgtttccacaaacccatcagccgctgttctagatgccagaggcactcc
aaggcgagccagtctttctggagtgttccctaacttatcttgctgtagcg
gaatggcctctcgtgaaattggtgattatttatttagccacagttgtgat
tacaagcctgcgtgcttgaaccagcagctaagttagcgtgagacgacacc
aaccctggtgaagcaggtttcttgcaaagggtcctaatgtacctcgaagc
acgatgacaatatcagcccacagtcactgaggggcagaaataccatagtt
acagaaactgggagaggcaatctctcaaggaactctgtgccttagttacc
ttccatataaggtgtgtggaaagagaacaattttgccttcccttgactct
ttcagctgcctaccgcttaattggaagcattgccaggctgggtgtttcct
tggtggtagaagctcgaaggagagaaaggaatgaagatcggattttgtgc
ccagtggattgagggcctggggtagtgt
gaattctccccagccttagaacatgttcacacctttggaaagggaaggga
tggtaagctaatctggctcaaggggtgggataacccataacagtacattg
gttgatagaggagagtcatcagctgtttaatttagggcaacagtcctgaa
agttcttaccctaaatagcaaaacagggtgcgggaccctcaaggtcagct
gcagtgaaattaagccagggtttccacaccacacagtcctctctgttgac
ttcacctgtggctgattaatgtctcctttttttttttccccctcacccgc
cagcctgtgcaatttattttaagacagctcagatttttttcttgatcaat
tgctgtcaggatcactgtggaggatgttatcttaaagatgtggtgcgaat
gaaactgtgtgcagagggtagagtggagcaggcaggtggcttccttgtgg
tctgctaggagctgcgtggggacagctcacgcaccatttcttccggcagc
agtgaaacagttgtctatagtttcaggtgcacacatgagctccagacaga
cagcaagcacatggatcattcactttatcctcaggatacctgtgtgaagc
atcatagaagtccacagggaacgccttggatgactgacgaggcagaagtg
tatgctaattgagaaactgctgcctctgacaggtgtaaagtttccattca
gcttcagtggacatcgtgccttcttcctgtagccactagggatgttgaca
aaggacgatttgtgagtctcgggaattggaggtgggcagattccattggc
tccagagagtgcctcatgaccctcatccctttcactcattatgagagttg
aggaccaatttcaccttctattctagaactgggattttggggcccaagtg
ggagctctcttgatgacttgtggcttttctggtgactaggacatgttgca
aacacgaacattcaagaaaactgtgtccggggttggagatatggcaatca
tcatttaatggcactgggcttgctctcccaggagtactcagtttggtttc
ccagctaccccacatttgggtgtgactcacaaccatcttgataactttcc
tctccaatggggatcgtgaacacacataactttggggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_128676825_128677837
seq2: B6Ng01-175K18.b_43_1070 (reverse)

seq1  ACACTACCCCAGCCCCTC-ATCCACTGGGCACAAA--TCGATCTTCATTC  47
      |||||||||||| ||||| ||||||||||||||||   ||||||||||||
seq2  ACACTACCCCAGGCCCTCAATCCACTGGGCACAAAATCCGATCTTCATTC  50

seq1  C-TTCTCTCC-TCCAGCTTCTACCACCA--GGAACA-CCAGCCT-GCCAT  91
      | |||||||| || ||||||||||||||  | |||| ||||||| || ||
seq2  CTTTCTCTCCTTCGAGCTTCTACCACCAAGGAAACACCCAGCCTGGCAAT  100

seq1  GCTTCC-ATTTAGC-GTAGGCAGCTGAAAGAGTCA--GGGAGGC-AAATT  136
      |||||| ||| ||| ||||||||||||||||||||  || |||| |||||
seq2  GCTTCCAATTAAGCGGTAGGCAGCTGAAAGAGTCAAGGGAAGGCAAAATT  150

seq1  GTTCTCTTTCCACACACCTTATATGG-AGGTAACTAAGGCACAGAG-TCC  184
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  GTTCTCTTTCCACACACCTTATATGGAAGGTAACTAAGGCACAGAGTTCC  200

seq1  CTGAGAGATTGCCTCTCCCCAGTTTCTGTAACTATGGTATTTCTGCCCCT  234
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGAGAGATTGCCTCT-CCCAGTTTCTGTAACTATGGTATTTCTGCCCCT  249

seq1  CAGTGACTGTGGGCTGATATTGTCATCGTGCTTCGAGGTACATTAGGACC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGTGGGCTGATATTGTCATCGTGCTTCGAGGTACATTAGGACC  299

seq1  CTTTGCAAGAAACCTGCTTCACCAGGGTTGGTGTCGTCTCACGCTAACTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAGAAACCTGCTTCACCAGGGTTGGTGTCGTCTCACGCTAACTT  349

seq1  AGCTGCTGGTTCAAGCACGCAGGCTTGTAATCACAACTGTGGCTAAATAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGTTCAAGCACGCAGGCTTGTAATCACAACTGTGGCTAAATAA  399

seq1  ATAATCACCAATTTCACGAGAGGCCATTCCGCTACAGCAAGATAAGTTAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACCAATTTCACGAGAGGCCATTCCGCTACAGCAAGATAAGTTAG  449

seq1  GGAACACTCCAGAAAGACTGGCTCGCCTTGGAGTGCCTCTGGCATCTAGA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTCCAGAAAGACTGGCTCGCCTTGGAGTGCCTCTGGCATCTAGA  499

seq1  ACAGCGGCTGATGGGTTTGTGGAAACAGTCAGTTACATTTTTATGAGACT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCTGATGGGTTTGTGGAAACAGTCAGTTACATTTTTATGAGACT  549

seq1  TTAAAAAAAATCAGTTAGTGTTTGAGTTGAATTTTTAATCACGGTCAAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATCAGTTAGTGTTTGAGTTGAATTTTTAATCACGGTCAAAA  599

seq1  ATTCACAGTTTTAGCCCAGGATCGATCCTGATAAAGCCAGCTCTGCCTCG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTTTTAGCCCAGGATCGATCCTGATAAAGCCAGCTCTGCCTCG  649

seq1  TTCCCGACACTGTTAAAATGCCTGTTGGGGAATCACCTTTACACACTACC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGACACTGTTAAAATGCCTGTTGGGGAATCACCTTTACACACTACC  699

seq1  CCAAGAGAATACTTTCATCTACCATTATCTTTGAAGCTGCTGGTAGGTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAATACTTTCATCTACCATTATCTTTGAAGCTGCTGGTAGGTGA  749

seq1  CCTGTGGGGCTAATTGCTTCTTGTTTCTTATGCAAAGGTGTTGAAATGCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGGCTAATTGCTTCTTGTTTCTTATGCAAAGGTGTTGAAATGCA  799

seq1  TGTAGCCTAGTCTGTCCTCACATTCAGAGTGCTCCTAAAACTGCATTTTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTAGTCTGTCCTCACATTCAGAGTGCTCCTAAAACTGCATTTTA  849

seq1  AAAAAATTATTTCATTGAATCATAGAAAACCCAGCACTCTGTTAATACAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATTTCATTGAATCATAGAAAACCCAGCACTCTGTTAATACAT  899

seq1  GCAATTGGGTGAATTTGAGCAGGCACATCTGTGGGACTGTTACCACCCTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGGTGAATTTGAGCAGGCACATCTGTGGGACTGTTACCACCCTG  949

seq1  AAAAAAAGAAACAATGTCCAATCCCTCCGATTGTTTCCATCTCCCGTGGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAACAATGTCCAATCCCTCCGATTGTTTCCATCTCCCGTGGG  999

seq1  TGTCCTGTAAACTCTTTTAACAAGAATTC  1013
      |||||||||||||||||||||||||||||
seq2  TGTCCTGTAAACTCTTTTAACAAGAATTC  1028

seq1: chr8_128540762_128541873
seq2: B6Ng01-175K18.g_57_1197

seq1  GAATTCTCCCCAGCCTTAGAACATGTTCACACCTTTGGAAAGGGAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCAGCCTTAGAACATGTTCACACCTTTGGAAAGGGAAGGGA  50

seq1  TGGTAAGCTAATCTGGCTCAAGGGGTGGGATAACCCATAACAGTACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCTAATCTGGCTCAAGGGGTGGGATAACCCATAACAGTACATTG  100

seq1  GTTGATAGAGGAGAGTCATCAGCTGTTTAATTTAGGGCAACAGTCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGAGGAGAGTCATCAGCTGTTTAATTTAGGGCAACAGTCCTGAA  150

seq1  AGTTCTTACCCTAAATAGCAAAACAGGGTGCGGGACCCTCAAGGTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTACCCTAAATAGCAAAACAGGGTGCGGGACCCTCAAGGTCAGCT  200

seq1  GCAGTGAAATTAAGCCAGGGTTTCCACACCACACAGTCCTCTCTGTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAAATTAAGCCAGGGTTTCCACACCACACAGTCCTCTCTGTTGAC  250

seq1  TTCACCTGTGGCTGATTAATGTCTCCTTTTTTTTTTTCCCCCTCACCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGTGGCTGATTAATGTCTCCTTTTTTTTTTTCCCCCTCACCCGC  300

seq1  CAGCCTGTGCAATTTATTTTAAGACAGCTCAGATTTTTTTCTTGATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGCAATTTATTTTAAGACAGCTCAGATTTTTTTCTTGATCAAT  350

seq1  TGCTGTCAGGATCACTGTGGAGGATGTTATCTTAAAGATGTGGTGCGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGGATCACTGTGGAGGATGTTATCTTAAAGATGTGGTGCGAAT  400

seq1  GAAACTGTGTGCAGAGGGTAGAGTGGAGCAGGCAGGTGGCTTCCTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTGTGCAGAGGGTAGAGTGGAGCAGGCAGGTGGCTTCCTTGTGG  450

seq1  TCTGCTAGGAGCTGCGTGGGGACAGCTCACGCACCATTTCTTCCGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGGAGCTGCGTGGGGACAGCTCACGCACCATTTCTTCCGGCAGC  500

seq1  AGTGAAACAGTTGTCTATAGTTTCAGGTGCACACATGAGCTCCAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACAGTTGTCTATAGTTTCAGGTGCACACATGAGCTCCAGACAGA  550

seq1  CAGCAAGCACATGGATCATTCACTTTATCCTCAGGATACCTGTGTGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCACATGGATCATTCACTTTATCCTCAGGATACCTGTGTGAAGC  600

seq1  ATCATAGAAGTCCACAGGGAACGCCTTGGATGACTGACGAGGCAGAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGAAGTCCACAGGGAACGCCTTGGATGACTGACGAGGCAGAAGTG  650

seq1  TATGCTAATTGAGAAACTGCTGCCTCTGACAGGTGTAAAGTTTCCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAATTGAGAAACTGCTGCCTCTGACAGGTGTAAAGTTTCCATTCA  700

seq1  GCTTCAGTGGACATCGTGCCTTCTTCCTGTAGCCACTAGGGATGTTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTGGACATCGTGCCTTCTTCCTGTAGCCACTAGGGATGTTGACA  750

seq1  AAGGACGA-TTGTGAGTCTCGGGAA-TGGAGGTGGGCAGATTCCATTGGC  798
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AAGGACGATTTGTGAGTCTCGGGAATTGGAGGTGGGCAGATTCCATTGGC  800

seq1  TCCAGAGAGTGCCTCATGACCCTCATCCC-TTCACTCATTATGAGAGTTG  847
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCAGAGAGTGCCTCATGACCCTCATCCCTTTCACTCATTATGAGAGTTG  850

seq1  AGGACCAA-TTCACCTTCTATTCTAGAACTGGGATTT--GGGGCCAAGTG  894
      |||||||| ||||||||||||||||||||||||||||  ||| |||||||
seq2  AGGACCAATTTCACCTTCTATTCTAGAACTGGGATTTTGGGGCCCAAGTG  900

seq1  GGAGCTCTCTTGATGACTTGTGGCTTTTCT-GTGACTAGGAACATGTTGC  943
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GGAGCTCTCTTGATGACTTGTGGCTTTTCTGGTGACTAGG-ACATGTTGC  949

seq1  AAACACG-ACA-TCAAGAAAACTGTGT-CTGGGTTGGAGATATGGC-ATC  989
      ||||||| ||| ||||||||||||||| | |||||||||||||||| |||
seq2  AAACACGAACATTCAAGAAAACTGTGTCCGGGGTTGGAGATATGGCAATC  999

seq1  ATCA-TTAAGGGCACTGG--CTGCTCTCCCA-GAGGACTCAGTTTGGTTT  1035
      |||| |||| ||||||||   |||||||||| ||| ||||||||||||||
seq2  ATCATTTAATGGCACTGGGCTTGCTCTCCCAGGAGTACTCAGTTTGGTTT  1049

seq1  -CCAGC--ACCCACATT---GGGTGGCTCACAACCATCT--GTAACTTTC  1077
       |||||   ||||||||   | ||| |||||||||||||   ||||||||
seq2  CCCAGCTACCCCACATTTGGGTGTGACTCACAACCATCTTGATAACTTTC  1099

seq1  ACCTCCAATGGGG-TC-TG-ACACAC---ACTTT-GGGCATC  1112
        ||||||||||| || || ||||||   ||||| |||||||
seq2  CTCTCCAATGGGGATCGTGAACACACATAACTTTGGGGCATC  1141