BAC Information

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BAC

Clone NameB6Ng01-178H10
Chromosome8 (Build37)
Map Location 89,379,826 - 89,536,826
singlet/doubletdoublet
Overlap geneBC004022, LOC666960
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H10.bB6Ng01-178H10.g
ACCGA005444GA005445
length1,1081,091
definitionB6Ng01-178H10.b B6Ng01-178H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,379,826 - 89,380,934)(89,535,751 - 89,536,826)
sequence
gaattcctgttcatgcctctggaaacaaatgacctggctgtttttcacac
catagcagccagtcaacatgtctaaggcagaggagagctaggtaacacta
gctagagcagtgatcatcaccccaggcagggcagtggcggggaatagtgg
aaagccctttccgagttaacccggacagcatgacttccttctggcttcca
cttagtaaaaactagttgtggaactgctatagaaagaccagcaacgctgg
gcgtggtggcgcatgcctttaatctgagcactcaggaggcagaagcagag
gcaggctgatttctgagttcaaggccagcctggtctacaaagtgagttcc
aggacagccaggactatacagagaaaccctgtctcgaaaaaaaaaaaaaa
aaaaaaaaagacagaccagcaagaaagtggacagaatgtacagttctgac
aagtgaacgggcaaaccccatctacacggaaaatcaccaaagcaacaagt
caggtgctctcaggctggggtttcagacgcctctgtgatgtcgagccaga
caccgcaaacatgtccactgactcacgactgactcattcatggtgacaag
ggggaaatgaaccaaaaacctacagagtcagcagcataaggcaggtgttt
tggaatttctcatcatatacatgagctgcagacatcatgtcagacaaaga
aacagcaacccagggcagacaggggagttcccaccaggataccctgctcc
tggtggcctcagatttccttctcaattaagacagcaaatgggtgagggtc
cctctgaagcagttatgcatccaatgttgataaggtctgaacattctaat
tttaacttctggcaggccagttgctgagaaagactttatgggccccaagt
tctaggtgtgactctgggaaggtcatggaagtgataccaaattttttgct
ccaaaaaacttgtatgaagatcccatcacaaccccacattaatatatagt
tactcaattaatatataatgatggatgatgatgccacagggctgagatga
agtttagaaggcgaatatttgctagtattgtctagattcaaggtcaattc
tcacacag

gaattccaaagtagatcagtcacatgattccaagttgtcccacctttgtg
tgtatagtcaaggaaatcaaagcaatataagctgaggagctgctgcatgc
tcaaagtaactgtgagatcactcacatggtttgatatggaaaagatgaga
tgcccaacaacagatgactgtctaaataaagtgtgatataaacatacaat
gaagtgttattcagccataaagaagaatgaaaccctgtcatctgccccca
aataaataaaaaaggagtgcgtatgttaagtggaaggcacagaagacaag
tacctcatgtttccctgtgcataagctggaaaatgtggagctgaaagcag
aaccatgacaactatggtggggaggggacatcaacaggacacgctgcatg
catgtgtgtcaaggctacactaaatcccacttaataaatgatgactacat
gctcataaaaataaaagagaacacataagtaacaagtaagtaaatgaaaa
gatacagagaggaagtaagattaaaatcacagtgaagtaagctatacatt
aaccagaatagcttagtgtgtggatggatgcaggtatgtgtgcaccaagt
gtcatacactgcttcacccaatagctgtagactatacattattctcaagt
ctgtatgggcatctcagcaagacacgtggcatcctaagccaggaagttca
ctttaaacaatttaaagtaacagagatcatatgatgtctagtttcagacc
acagtagaattaaaccagaaatttataatgaaaggattcctggaaaatcc
taaaatgctagaaaattaaaccaacaccctccccattagtaagccaaaca
atctcaaaataaaaatttaaaatattgtaactagatgaagatacaaccca
tccaaagtcatgctacacaagtgatgtgggagggaaaccctggagcagag
gatgctagagcggagatgctagagttgaagatgctagagcagaagttgct
gccagagagagagagattttctaaaagcagccactgtaaaactaaactca
gcaacacaaacaaacccaaatgcgccaataggagaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89379826_89380934
seq2: B6Ng01-178H10.b_47_1154

seq1  GAATTCCTGTTCATGCCTCTGGAAACAAATGACCTGGCTGTTTTTCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCATGCCTCTGGAAACAAATGACCTGGCTGTTTTTCACAC  50

seq1  CATAGCAGCCAGTCAACATGTCTAAGGCAGAGGAGAGCTAGGTAACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGCCAGTCAACATGTCTAAGGCAGAGGAGAGCTAGGTAACACTA  100

seq1  GCTAGAGCAGTGATCATCACCCCAGGCAGGGCAGTGGCGGGGAATAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCAGTGATCATCACCCCAGGCAGGGCAGTGGCGGGGAATAGTGG  150

seq1  AAAGCCCTTTCCGAGTTAACCCGGACAGCATGACTTCCTTCTGGCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTTCCGAGTTAACCCGGACAGCATGACTTCCTTCTGGCTTCCA  200

seq1  CTTAGTAAAAACTAGTTGTGGAACTGCTATAGAAAGACCAGCAACGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAAAAACTAGTTGTGGAACTGCTATAGAAAGACCAGCAACGCTGG  250

seq1  GCGTGGTGGCGCATGCCTTTAATCTGAGCACTCAGGAGGCAGAAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGCGCATGCCTTTAATCTGAGCACTCAGGAGGCAGAAGCAGAG  300

seq1  GCAGGCTGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC  350

seq1  AGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAA  400

seq1  AAAAAAAAAGACAGACCAGCAAGAAAGTGGACAGAATGTACAGTTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGACAGACCAGCAAGAAAGTGGACAGAATGTACAGTTCTGAC  450

seq1  AAGTGAACGGGCAAACCCCATCTACACGGAAAATCACCAAAGCAACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACGGGCAAACCCCATCTACACGGAAAATCACCAAAGCAACAAGT  500

seq1  CAGGTGCTCTCAGGCTGGGGTTTCAGACGCCTCTGTGATGTCGAGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTCTCAGGCTGGGGTTTCAGACGCCTCTGTGATGTCGAGCCAGA  550

seq1  CACCGCAAACATGTCCACTGACTCACGACTGACTCATTCATGGTGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCAAACATGTCCACTGACTCACGACTGACTCATTCATGGTGACAAG  600

seq1  GGGGAAATGAACCAAAAACCTACAGAGTCAGCAGCATAAGGCAGGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGAACCAAAAACCTACAGAGTCAGCAGCATAAGGCAGGTGTTT  650

seq1  TGGAATTTCTCATCATATACATGAGCTGCAGACATCATGTCAGACAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTCTCATCATATACATGAGCTGCAGACATCATGTCAGACAAAGA  700

seq1  AACAGCAACCCAGGGCAGACAGGGGAGTTCCCACCAGGATACCCTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACCCAGGGCAGACAGGGGAGTTCCCACCAGGATACCCTGCTCC  750

seq1  TGGTGGCCTCAGATTTCCTTCTCAATTAAGACAGCAAATGGGTGAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCTCAGATTTCCTTCTCAATTAAGACAGCAAATGGGTGAGGGTC  800

seq1  CCTCTGAAGCAGTTATGCATCCAATGTTGATAAGGTCTGAACATTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGCAGTTATGCATCCAATGTTGATAAGGTCTGAACATTCTAAT  850

seq1  TTTAACTTCTGGCAGGCCAGGTGCTGAGGAAAGACTTTATGGCCCCCAAG  900
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  TTTAACTTCTGGCAGGCCAGTTGCTGA-GAAAGACTTTATGGGCCCCAAG  899

seq1  -TCTAGGTGTGACTCTGGGAAGGTCATGGAAGTGATACCAAA-TTTTTGC  948
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTAGGTGTGACTCTGGGAAGGTCATGGAAGTGATACCAAATTTTTTGC  949

seq1  TCCAAAAAACTTGTATGAAGATTCCATCACA--CACACATTAATAATAAT  996
      |||||||||||||||||||||| ||||||||  | ||||||||||   ||
seq2  TCCAAAAAACTTGTATGAAGATCCCATCACAACCCCACATTAATA--TAT  997

seq1  AG-TAATAAATAATAATA-ATAATGAT-GATGATGATG-CACAAGGCTGA  1042
      || || | |||  ||||| |||||||| |||||||||| |||| ||||||
seq2  AGTTACTCAAT--TAATATATAATGATGGATGATGATGCCACAGGGCTGA  1045

seq1  GAATGAAGTTTTAGAAGCAGAATATTTGCCTAGTA-TGTCTAAGAATCAA  1091
      | |||||| ||||||||  ||||||||| |||||| ||||| ||| || |
seq2  G-ATGAAG-TTTAGAAGGCGAATATTTG-CTAGTATTGTCT-AGATTC-A  1090

seq1  AGTTCAATTCTCACACAG  1109
      || |||||||||||||||
seq2  AGGTCAATTCTCACACAG  1108


seq1: chr8_89535751_89536826
seq2: B6Ng01-178H10.g_82_1152 (reverse)

seq1  TTTTTTTCTTAT-TTGGGGTTTAATTTGGGGTTTTGTTTGTTTGTTTGCT  49
      |||||||||  | |||| |    |||||||  |||||||||    |||||
seq2  TTTTTTTCTCCTATTGGCG---CATTTGGG--TTTGTTTGT---GTTGCT  42

seq1  GAGTTTAGGTTTTACAGT-GCTGCTTTTTAGAAATCTCTCTCTCTCTGGC  98
      ||||||| |||||||||| |||||||||   |||||||||||||||||||
seq2  GAGTTTA-GTTTTACAGTGGCTGCTTTTAGAAAATCTCTCTCTCTCTGGC  91

seq1  AGCAACCTCTGCTCTAGCATCTTCCACTCTAGCATCCTCCGCTCTAGCAT  148
      |||||| ||||||||||||||||| |||||||||| ||||||||||||||
seq2  AGCAACTTCTGCTCTAGCATCTTCAACTCTAGCAT-CTCCGCTCTAGCAT  140

seq1  CCTCTGCTCCA-GGTTTCCCCTCCACATCACTTGTGTAGCATGACTTTGG  197
      ||||||||||| ||||||||  ||||||||||||||||||||||||||||
seq2  CCTCTGCTCCAGGGTTTCCCTCCCACATCACTTGTGTAGCATGACTTTGG  190

seq1  ATGGGTTGTATCTTCATCTAGTTACAATATTTTAAA-TTTTATTTTGAGA  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGGTTGTATCTTCATCTAGTTACAATATTTTAAATTTTTATTTTGAGA  240

seq1  TTGTTTGGCTTACTAATGGGGAGGGTGTT-GTTTAATTTTCTAGCATTTT  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGTTTGGCTTACTAATGGGGAGGGTGTTGGTTTAATTTTCTAGCATTTT  290

seq1  AGGATTTTCCAGGAATCCTTTCATTATAAATTTCTGGTTTAATTCTACTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCCAGGAATCCTTTCATTATAAATTTCTGGTTTAATTCTACTG  340

seq1  TGGTCTGAAACTAGACATCATATGATCTCTGTTACTTTAAATTGTTTAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAAACTAGACATCATATGATCTCTGTTACTTTAAATTGTTTAAA  390

seq1  GTGAACTTCCTGGCTTAGGATGCCACGTGTCTTGCTGAGATGCCCATACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTCCTGGCTTAGGATGCCACGTGTCTTGCTGAGATGCCCATACA  440

seq1  GACTTGAGAATAATGTATAGTCTACAGCTATTGGGTGAAGCAGTGTATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGAATAATGTATAGTCTACAGCTATTGGGTGAAGCAGTGTATGA  490

seq1  CACTTGGTGCACACATACCTGCATCCATCCACACACTAAGCTATTCTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTGCACACATACCTGCATCCATCCACACACTAAGCTATTCTGGT  540

seq1  TAATGTATAGCTTACTTCACTGTGATTTTAATCTTACTTCCTCTCTGTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATAGCTTACTTCACTGTGATTTTAATCTTACTTCCTCTCTGTAT  590

seq1  CTTTTCATTTACTTACTTGTTACTTATGTGTTCTCTTTTATTTTTATGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTACTTACTTGTTACTTATGTGTTCTCTTTTATTTTTATGAG  640

seq1  CATGTAGTCATCATTTATTAAGTGGGATTTAGTGTAGCCTTGACACACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTCATCATTTATTAAGTGGGATTTAGTGTAGCCTTGACACACAT  690

seq1  GCATGCAGCGTGTCCTGTTGATGTCCCCTCCCCACCATAGTTGTCATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGCGTGTCCTGTTGATGTCCCCTCCCCACCATAGTTGTCATGGT  740

seq1  TCTGCTTTCAGCTCCACATTTTCCAGCTTATGCACAGGGAAACATGAGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCAGCTCCACATTTTCCAGCTTATGCACAGGGAAACATGAGGT  790

seq1  ACTTGTCTTCTGTGCCTTCCACTTAACATACGCACTCCTTTTTTATTTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTCTGTGCCTTCCACTTAACATACGCACTCCTTTTTTATTTAT  840

seq1  TTGGGGGCAGATGACAGGGTTTCATTCTTCTTTATGGCTGAATAACACTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCAGATGACAGGGTTTCATTCTTCTTTATGGCTGAATAACACTT  890

seq1  CATTGTATGTTTATATCACACTTTATTTAGACAGTCATCTGTTGTTGGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATGTTTATATCACACTTTATTTAGACAGTCATCTGTTGTTGGGC  940

seq1  ATCTCATCTTTTCCATATCAAACCATGTGAGTGATCTCACAGTTACTTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTTTTCCATATCAAACCATGTGAGTGATCTCACAGTTACTTTG  990

seq1  AGCATGCAGCAGCTCCTCAGCTTATATTGCTTTGATTTCCTTGACTATAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGCAGCTCCTCAGCTTATATTGCTTTGATTTCCTTGACTATAC  1040

seq1  ACACAAAGGTGGGACAACTTGGAATCATGTG  1076
      |||||||||||||||||||||||||||||||
seq2  ACACAAAGGTGGGACAACTTGGAATCATGTG  1071


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