BAC Information

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BAC

Clone NameB6Ng01-179H12
Chromosome8 (Build37)
Map Location 55,275,586 - 55,481,795
singlet/doubletdoublet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H12.bB6Ng01-179H12.g
ACCGA006180GA006181
length8021,124
definitionB6Ng01-179H12.b B6Ng01-179H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,275,586 - 55,276,386)(55,480,672 - 55,481,795)
sequence
gaattctattgggaatcttactatgcctacaaactatagtggcattacta
agggcatctagctctacccaggagcattgctttaagcagtgctgagatag
cagaagagctgagtatcttagctcactttcttgcccctgcttcctatttt
cttagtattagaaatttttatgatgtttgtgtgtatgcgcgcgcacgcgt
atgcatgtgcgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgc
gtgtgtgtgtgtgtgtgtttatgtgtacctgcagagggcagagtggtgtt
ggactgaggtacaagtgctaggggttggtcagagcactgacaggtacaaa
gctaggcaaaagaggcacaggcaaataaaaaatgtggcaaatatccagct
tcttcttcaacttctagaccaaaccacaaaggcttagcagctgaggacat
atctgaagaattctccccgtcagtaaacctcacacctgcttctgtgattg
ctcttgtccagcatggtcaggtaagtttaaagtcagatcagggcatgttc
acccaaagttgtgcacccatcagatttcctgtcgttgttgaaactggcaa
acttgggaaagaagactaataaagacatttaaaatcctcagtcctccagg
ataggccagccaaatcttctttgcaatgaaccatctcctttccttccttt
ttcttttttttcctcctcctcttcttcttcctttcccctcctcctaattc
tcgtttccttctcctttcctcctcctcctcctctaccctttcctcctcct
cc
gaattcactttaatattttaaaattcaattaatatatttaattgtgttta
tgagggggggtacagtgggggtcacatgcataccagtgcacttgtgtgga
ggtcaggggacatctagcttgaagtgattctctccatagaccatgagagc
cctagctatggtttgaaagcatatagtcataggtagtagtcaatatcttt
gcttgccgagccatattggcagtcttcattcaataattctttaatttatt
tctactggtgacaagttgttttaaaaatttgtttgaaagtatatacacat
tttgttcttattctggaaagttctagtcattgataaaacttgatactgtc
atttaattcagctttgcctcctctagcatttatttcagcttgtgcagtca
gctctcaactcttacctctctaaaggtaaatgcttttatttctcttattg
ccctgaatattttatatttttccaccacatatgttagtgcaatactccta
cttataatctgtatgtgcttttatggatacaggtagattatcttgcttaa
atcttttaagaatatatttcagtagagtttaaattggtagccctttaaat
ttcaagttttcttctgacttgatttttctcttttattagaaataatgtat
ctagttgtttagactaactcactgcactctctaccttgtcctctaggttt
ctgctatttttccatatttccaatgcttggtatctttttgtctttagaat
aaaccaacattaccatacacccatatgaccacgtctagcttgttctagaa
gtgaaaacaacatttgttttttcatccttgcctgtctggacaatttttct
cctcaactctattgaattttctgatagttctcaaatttgctgagcagcct
cacttcaaggtcttagcattgttcttgccataattagacattttcttcct
actattcagctgaattttctttgattcgccactcaaaaataaactgactt
actcaaacctgccacaaataccaatagccctttcatggattagttttttt
cagacttacagttctcctccaggactgattaccatcttactgttcatttt
ttatctgcgatcctccaacacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55275586_55276386
seq2: B6Ng01-179H12.b_42_843

seq1  GAATTCTATTGGGAATCTTACTATGCCTACAAACTATAGTGGCATTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGGAATCTTACTATGCCTACAAACTATAGTGGCATTACTA  50

seq1  AGGGCATCTAGCTCTACCCAGGAGCATTGCTTTAAGCAGTGCTGAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCTAGCTCTACCCAGGAGCATTGCTTTAAGCAGTGCTGAGATAG  100

seq1  CAGAAGAGCTGAGTATCTTAGCTCACTTTCTTGCCCCTGCTTCCTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCTGAGTATCTTAGCTCACTTTCTTGCCCCTGCTTCCTATTTT  150

seq1  CTTAGTATTAGAAATTTTTATGATGTTTGTGTGTATGCGCGCGCACGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTAGAAATTTTTATGATGTTTGTGTGTATGCGCGCGCACGCGT  200

seq1  ATGCATGTGCGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGCGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGC  250

seq1  GTGTGTGTGTGTGTGTGTTTATGTGTACCTGCAGAGGGCAGAGTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTTATGTGTACCTGCAGAGGGCAGAGTGGTGTT  300

seq1  GGACTGAGGTACAAGTGCTAGGGGTTGGTCAGAGCACTGACAGGTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGGTACAAGTGCTAGGGGTTGGTCAGAGCACTGACAGGTACAAA  350

seq1  GCTAGGCAAAAGAGGCACAGGCAAATAAAAAATGTGGCAAATATCCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAAAAGAGGCACAGGCAAATAAAAAATGTGGCAAATATCCAGCT  400

seq1  TCTTCTTCAACTTCTAGACCAAACCACAAAGGCTTAGCAGCTGAGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCAACTTCTAGACCAAACCACAAAGGCTTAGCAGCTGAGGACAT  450

seq1  ATCTGAAGAATTCTCCCCGTCAGTAAACCTCACACCTGCTTCTGTGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGAATTCTCCCCGTCAGTAAACCTCACACCTGCTTCTGTGATTG  500

seq1  CTCTTGTCCAGCATGGTCAGGTAAGTTTAAAGTCAGATCAGGGCATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCCAGCATGGTCAGGTAAGTTTAAAGTCAGATCAGGGCATGTTC  550

seq1  ACCCAAAGTTGTGCACCCATCAGATTTCCTGTCGTTGTTGAAACTGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGTTGTGCACCCATCAGATTTCCTGTCGTTGTTGAAACTGGCAA  600

seq1  ACTTGGGAAAGAAGACTAATAAAGACATTTAAAATCCTCAGTCCTCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAAAGAAGACTAATAAAGACATTTAAAATCCTCAGTCCTCCAGG  650

seq1  ATAGGCCAGCCAAATCTTCTTTGCAATGAACCATCTCCTTTCCTTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCAGCCAAATCTTCTTTGCAATGAACCATCTCCTTTCCTTCCTTT  700

seq1  TTCTTTTTTTTCCTCCTCCTCTTCTTCTTCC-TTCCCCTCCTCCTAATTC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTTTTTTTCCTCCTCCTCTTCTTCTTCCTTTCCCCTCCTCCTAATTC  750

seq1  TCGTTTCCTTCTCCTTTCCTCCTCCTCCTCCTCTAACCTTTCCTCCTCCT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCGTTTCCTTCTCCTTTCCTCCTCCTCCTCCTCTACCCTTTCCTCCTCCT  800

seq1  CC  801
      ||
seq2  CC  802

seq1: chr8_55480672_55481795
seq2: B6Ng01-179H12.g_70_1193 (reverse)

seq1  AAGGTGTTGTAGATTCACAAGATAAAAAAAATGAACAGTCAGATGGTAAT  50
      ||||||||| ||  || | ||||  |||||||||||||| ||||||||||
seq2  AAGGTGTTGGAGGATCGC-AGAT--AAAAAATGAACAGTAAGATGGTAAT  47

seq1  CAGTCCTGGA-GAGAACTGT-AGTCTGAAAAAAAATTAAATCATGAAGGG  98
      |||||||||| ||||||||| |||||| ||||||| |||  |||||| ||
seq2  CAGTCCTGGAGGAGAACTGTAAGTCTG-AAAAAAACTAATCCATGAAAGG  96

seq1  GCTA-TGGTA-TTGTGACAAGTTGTGAGTTAGTCAG-TTATTTTTGAGTG  145
      |||| ||||| ||||| || ||| ||||| |||||| |||||||||||||
seq2  GCTATTGGTATTTGTGGCAGGTT-TGAGTAAGTCAGTTTATTTTTGAGTG  145

seq1  GCGAAATCAAAAGAAAATTCAGCTGAATAGTAGGAAGAAAATGTCTAAAT  195
      ||| |||| ||||||||||||||||||||||||||||||||||||| |||
seq2  GCG-AATC-AAAGAAAATTCAGCTGAATAGTAGGAAGAAAATGTCT-AAT  192

seq1  TATGGCAAGAACAAATGCTAAGACCTTGAAGTGAGGCTGCTCAGCAAATT  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAGAAC-AATGCTAAGACCTTGAAGTGAGGCTGCTCAGCAAATT  241

seq1  TGAGAACTATCAAGAAAATTC-ATAGAGTTGAGGAGAAAAATTGTCCAGA  294
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TGAGAACTATC-AGAAAATTCAATAGAGTTGAGGAGAAAAATTGTCCAGA  290

seq1  CAGGCAAGGATGAAAAAACAAATGTTGTTTTCACTTCTAGAACAAGCTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGGATGAAAAAACAAATGTTGTTTTCACTTCTAGAACAAGCTAG  340

seq1  ACGTGGTCATATGGGTGTATGGTAATGTTGGTTTATTCT-AAGACAAAAA  393
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACGTGGTCATATGGGTGTATGGTAATGTTGGTTTATTCTAAAGACAAAAA  390

seq1  GATACCAAGCATTGGAAATATGG-AAAATAGCAGAAACCTAGAGGACAAG  442
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATACCAAGCATTGGAAATATGGAAAAATAGCAGAAACCTAGAGGACAAG  440

seq1  GTAGAGAGTGCAGTGAGTTAGTCT-AACAACTAGATACATTATTTCTAAT  491
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGAGAGTGCAGTGAGTTAGTCTAAACAACTAGATACATTATTTCTAAT  490

seq1  -AAAGAGAAAAATCAAGTCAGAAGAAAACTTGAAATTTAAAGGGCTACCA  540
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAAATCAAGTCAGAAGAAAACTTGAAATTTAAAGGGCTACCA  540

seq1  ATTTAAACTCTACTGAAATATATTCTTAAAAGATTTAAGCAAGATAATCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTCTACTGAAATATATTCTTAAAAGATTTAAGCAAGATAATCT  590

seq1  ACCTGTATCCATAAAAGCACATACAGATTATAAGTAGGAGTATTGCACTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATCCATAAAAGCACATACAGATTATAAGTAGGAGTATTGCACTA  640

seq1  ACATATGTGGTGGAAAAATATAAAATATTCAGGGCAATAAGAGAAATAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGGTGGAAAAATATAAAATATTCAGGGCAATAAGAGAAATAAA  690

seq1  AGCATTTACCTTTAGAGAGGTAAGAGTTGAGAGCTGACTGCACAAGCTGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTACCTTTAGAGAGGTAAGAGTTGAGAGCTGACTGCACAAGCTGA  740

seq1  AATAAATGCTAGAGGAGGCAAAGCTGAATTAAATGACAGTATCAAGTTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCTAGAGGAGGCAAAGCTGAATTAAATGACAGTATCAAGTTTT  790

seq1  ATCAATGACTAGAACTTTCCAGAATAAGAACAAAATGTGTATATACTTTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGACTAGAACTTTCCAGAATAAGAACAAAATGTGTATATACTTTC  840

seq1  AAACAAATTTTTAAAACAACTTGTCACCAGTAGAAATAAATTAAAGAATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTTTTAAAACAACTTGTCACCAGTAGAAATAAATTAAAGAATT  890

seq1  ATTGAATGAAGACTGCCAATATGGCTCGGCAAGCAAAGATATTGACTACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGAAGACTGCCAATATGGCTCGGCAAGCAAAGATATTGACTACT  940

seq1  ACCTATGACTATATGCTTTCAAACCATAGCTAGGGCTCTCATGGTCTATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGACTATATGCTTTCAAACCATAGCTAGGGCTCTCATGGTCTATG  990

seq1  GAGAGAATCACTTCAAGCTAGATGTCCCCTGACCTCCACACAAGTGCACT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATCACTTCAAGCTAGATGTCCCCTGACCTCCACACAAGTGCACT  1040

seq1  GGTATGCATGTGACCCACACTGTACCCCCCCTCATAAACACAATTAAATA  1090
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTATGCATGTGACCCCCACTGTACCCCCCCTCATAAACACAATTAAATA  1090

seq1  TATTAATTGAATTTTAAAATATTAAAGTGAATTC  1124
      ||||||||||||||||||||||||||||||||||
seq2  TATTAATTGAATTTTAAAATATTAAAGTGAATTC  1124