BAC Information

Click to search

BAC

Clone NameB6Ng01-180I11
Chromosome8 (Build37)
Map Location 106,846,333 - 106,847,369
singlet/doubletsinglet
Overlap geneCmtm2b
Upstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a
Downstream geneCmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180I11.bB6Ng01-180I11.g
ACCGA006934GA006935
length1,1261,046
definitionB6Ng01-180I11.b B6Ng01-180I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgcatgtatgcctgtgaaatcatttgtgctttgcagtttcat
gaggtcccatttatcagttgttgatcttagagcctgagccattggtgttc
tgtctaggacattgtctcctgtaccaatttgtttaaagctatttcccact
ttctcttctattagattaagtgtttctgggtctatgttgtggtatttgat
acacttggacttgagttttgtgcagagtgatgagtttggatctatttgaa
ttcttctacttgcagacatcagttagaccaacactttttgttgaagatgc
tttcttttttccagtgtatgtttttggggttctttgtcaaaaatcaagtg
ttgataggttgtgtgtgtttatttctgggtattcagtttgattccattga
atagcctgtctgttactgataccatgtagtttttattactattgctcttt
agtacagattgaagacagggatagtgtttcctctagaagttctttttatt
gttcaaaattgttttagatatcctgggattttttttgtttgttttttcat
atgaaattgagaattgttctttcaagagctgtaaagaattttgttggaat
cttgatagggattgcattgaatctatagattgcttttgacaagatggcca
ttttcactatgttaatcttaccaatcatgagcatggaaggtctttccatc
ttctaaatctttctcactttttttcttcagagacttgaagttcttgtcgt
agaggtctttcacttgcttggttagggttacaccaaagatttttatattt
atttttggctattgtgaagggtattgtatttctaacttctttctgaacct
gtttatcacttgtataaaggaacactactgatttttttttttttagttaa
ttttgtatcaatccactttgttgaaagcgtttatcacctctaggaaatct
ctgggttgttttgtgctcacttatgaatgctatccattatcatctgagat
agtgatacctttgaattcttccttttcaatttgtttccccttgatttcct
tttgtcgtctataattgcctctgggctagaactttacattcttaattaat
agaaatatattggggcaaaatgggat
gaattcagagacagcaataaagacttctgggcgcagggacatgcagagtg
caagtctctgattatggtaaactagattggaatgacagaggtgttggtgc
gggtgggggtggggttcctcaaaagcagggtagagcccttgcaacccctc
cggtgtacgtatatttttccattcagatcctcctcattgctgcaatggtc
tgtttccaaagagtggccactcatccaattgtaatcctgctgcttactat
ggaactgtcaatctgtgctttcttcttcttcctctactccttagccatca
acagatacattcccttcgtcttctggcctatgatggtaagtaaaaaacgg
taggaaggtgatgtgggtcacattctagccactggaggaaaaaaaaaaaa
agacaaccttgccccctctaccggtgctcgggctgggaagctgggttgga
gagggaaagccaggcaggagatgctcccaaaaaatgtaactgtgctgggt
caaagagagaagaaccaaaggctttgctgtcctcagaaatagggaaggtg
aggcgagcgtggtagcgcacgcctttaatcccagcactcgggaggcatag
gcaggcggatcttaatttgatgccagcctggtctacaaagtgagttccag
gacagccagggctatacagagaaaccctgtctcaaaaaaacaatcaatca
atcaatcaatcaatagaaattaaagacggcataacaactagccattttct
gataatgctggcatatatctcatttgggatatcattctagcattcaaaaa
aagaaaatcagactctgcattaaaccagtacagtaaaatgaagcaaatat
ccatcatgtgggagaaaagtgtcaggtccagaccccagctattctttggg
gttctttccgttattgtttgagaaatccctttatgaaggttcaagtgcag
gggaatttctgtacaaaggcagttatcttggtacattgtggcttcttcca
tttttgactcgtagcttgggttaatgtaaggactttgcttcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106846333_106847369
seq2: B6Ng01-180I11.g_68_1113

seq1  GAATTCAGAGACAGCAATAAAGACTTCTGGGCGCAGGGACATGCAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACAGCAATAAAGACTTCTGGGCGCAGGGACATGCAGAGTG  50

seq1  CAAGTCTCTGATTATGGTAAACTAGATTGGAATGACAGAGGTGTTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTGATTATGGTAAACTAGATTGGAATGACAGAGGTGTTGGTGC  100

seq1  GGGTGGGGGTGGGGTTCCTCAAAAGCAGGGTAGAGCCCTTGCAACCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTGGGGTTCCTCAAAAGCAGGGTAGAGCCCTTGCAACCCCTC  150

seq1  CGGTGTACGTATATTTTTCCATTCAGATCCTCCTCATTGCTGCAATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTACGTATATTTTTCCATTCAGATCCTCCTCATTGCTGCAATGGTC  200

seq1  TGTTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCTGCTGCTTACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCTGCTGCTTACTAT  250

seq1  GGAACTGTCAATCTGTGCTTTCTTCTTCTTCCTCTACTCCTTAGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTCAATCTGTGCTTTCTTCTTCTTCCTCTACTCCTTAGCCATCA  300

seq1  ACAGATACATTCCCTTCGTCTTCTGGCCTATGATGGTAAGTAAAAAACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACATTCCCTTCGTCTTCTGGCCTATGATGGTAAGTAAAAAACGG  350

seq1  TAGGAAGGTGATGTGGGTCACATTCTAGCCACTGGAGGAAAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGTGATGTGGGTCACATTCTAGCCACTGGAGGAAAAAAAAAAAA  400

seq1  AGACAACCTTGCCCCCTCTACCGGTGCTCGGGCTGGGAAGCTGGGTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCTTGCCCCCTCTACCGGTGCTCGGGCTGGGAAGCTGGGTTGGA  450

seq1  GAGGGAAAGCCAGGCAGGAGATGCTCCCAAAAAATGTAACTGTGCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAGCCAGGCAGGAGATGCTCCCAAAAAATGTAACTGTGCTGGGT  500

seq1  CAAAGAGAGAAGAACCAAAGGCTTTGCTGTCCTCAGAAATAGGGAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGAAGAACCAAAGGCTTTGCTGTCCTCAGAAATAGGGAAGGTG  550

seq1  AGGCGAGCGTGGTAGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGCGTGGTAGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATAG  600

seq1  GCAGGCGGATCTTAATTTGATGCCAGCCTGGTCTACAAAGTGAGTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATCTTAATTTGATGCCAGCCTGGTCTACAAAGTGAGTTCCAG  650

seq1  GACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACAATCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACAATCAATCA  700

seq1  ATCAATCAATCAATAGAAA-TAAAGACGGCATAACAACTAGCCA-TTTCT  748
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  ATCAATCAATCAATAGAAATTAAAGACGGCATAACAACTAGCCATTTTCT  750

seq1  GATAATGCTGGCATATATCTCA-TTGGGATATCATTCTAGCATTCAAAAA  797
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATAATGCTGGCATATATCTCATTTGGGATATCATTCTAGCATTCAAAAA  800

seq1  AAGAAAATCAGACTCTGCA-TAAACCAGTACAGTAAAATGAAGCAAATAT  846
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGAAAATCAGACTCTGCATTAAACCAGTACAGTAAAATGAAGCAAATAT  850

seq1  CAATCATGTGGGAGAAAAGTGTCAGGTCAAGACCCCAGCTATTCCTTGGG  896
      | |||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CCATCATGTGGGAGAAAAGTGTCAGGTCCAGACCCCAGCTATTCTTTGGG  900

seq1  GTTTCTTTCCGTTATTGTTTGAG-AATTCCTTTATG-AGGTTCAAGTGCA  944
      | ||||||||||||||||||||| ||| |||||||| |||||||||||||
seq2  G-TTCTTTCCGTTATTGTTTGAGAAATCCCTTTATGAAGGTTCAAGTGCA  949

seq1  GGGGGATTTCAGGTACAAAGGGAGTAAT-TTGGTAAAATTGTGGCT--CT  991
      |||| |||||  ||||||||| ||| || ||||| | |||||||||   |
seq2  GGGGAATTTC-TGTACAAAGGCAGTTATCTTGGT-ACATTGTGGCTTCTT  997

seq1  CCA-TTTTGACTCGTAGGCTTGGGTT-ATGTAAGGAC-TTGC-TCACACA  1037
      ||| |||||||||||| ||||||||| |||||||||| |||| |||||||
seq2  CCATTTTTGACTCGTA-GCTTGGGTTAATGTAAGGACTTTGCTTCACACA  1046