BAC Information

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BAC

Clone NameB6Ng01-181A10
Chromosome8 (Build37)
Map Location 108,030,624 - 108,175,974
singlet/doubletdoublet
Overlap geneHsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf
Upstream geneCcdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837
Downstream geneEG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181A10.bB6Ng01-181A10.g
ACCGA007298GA007299
length1,152985
definitionB6Ng01-181A10.b B6Ng01-181A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,174,823 - 108,175,974)(108,030,624 - 108,031,610)
sequence
gaattctttaaagaaacatgactgctgcacatttgtggcacacgtatata
catatactcaggtatacatacttatcagaatatacatatgttttagtttt
gtaagaaatcaaattgggaggtagagttgggagccaagtacttttgatgt
cccgggtttggtctctagtattgcaaaaacaaaataacaagtaaaacagg
tagggaaatagctaagtaaaacattggtcacacatgtgaggacccagagt
ctaattcacagaacctatgtaaaaaagctggccacccagcaaatcaaacc
agcaccatcaaatttgcaatcacatgcccaggtattaatttttgactaca
taaatcttagtagtgtagcatgtaagataatgtagttaaatgtattcaat
tgttcctaggaaactatcaaaacaaatacttcatattcatcactgcagca
tttagtcattgggagaaaagttatattttcaacaatctgttactgataag
ataaaactgggtttggctagatatagtggcatattcctttaatcccagca
ctcaggcgacaagaggcacacgatcaatatacatagagatgctgaggaga
gcaaaaacctgggtttcatggtacatgcctgtaactgcacatgaaaggca
gaaagagaggactgctgagaatgctgaggtcatcctgatctacatagtgt
tccagagcagccagggatatgtgagtgctcgcctcacaacaggaagtaag
gcctgtgaggtggtggggcgagcactcaggagacaagggcagcaggatct
ggagccagggccatcactggccacaaagctggaagccaatctaagctgta
tgaaaccctagctcaaaagtcctatatgtaccatatattgtaacgtctgc
ttcacagcttatatgagaattcattcttattaataaatttacactgtaaa
caacaataacacaaagttccttcatgaactggggaattataagtgcccag
ttacaaagtgccctgcctagcatggagagatgattaacagacagtcttat
taatttgtaccggaaacagaatgaatggtaaacaaaagattgtgaccttt
ggttgaaaacgaactcccagttgactggacacttatggatctgtgcctta
gc
gaattcagaaatctgcctgcctctgctcccctactgctaggatggactga
caatgacaatctataggtttcatgtgtacactcatctgtacacatacatg
atacacacacacacacacacacacacacacacacgagcaaaagatagaaa
gaaaaagaaacaaaaggaaagtaaaagtccactcttctatttcctgctta
caatcctcaagtcttccttctcgcagagaagttgcatttcttcctactgt
gaaattggaattgaagccatcagtcttcaagacattgccggcctgctaac
tgcagctgatctttgtgcttaactggttacccttccattcctggaaagac
tcagtccctccaccctagcaaggcaggctctcctggctctgagaactgcc
agaggcgtctcctgggtggaggttgggggagctcatcctatctgggcctc
agccagcagaaccgaaacctgtggtaatatcacttcatccagaaaacctc
gctctgagcttcaaagtagagagtgcctccgtcccagagctctaggggac
tctgctttctttctgtcaggggctctgctactctgcagcattgatctgat
tcaggccagctcctccagccagatcacaggaaggcgaaccacagagagga
atcacctttctcttgttctccactgcttccctaacagatgatagggaagc
acacaggaaacacccgaagtgtgggacgtggtggcacacgcctgccagct
caaccttcggaagattcgtaggacgacagcaatgcagaaggacaataaac
gggaagccatcttgggctacacagcagagactctgtctcaataaacaaca
aacaacaacaataaacagtaataaataataataaacatagatgattgcgt
gagacaggaaagatggagggaggagagagagatggtggtgtgcttctgtt
ttgttttctaggcagggctttttctgtgttagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108174823_108175974
seq2: B6Ng01-181A10.b_43_1194 (reverse)

seq1  GCTAAGGCA-GGAT-CATAAGTTGGTCAGTCAACT-GGAGTCTGTTTTAC  47
      |||||||||  ||| |||||| ||  ||||||||| |||||  ||||| |
seq2  GCTAAGGCACAGATCCATAAG-TGTCCAGTCAACTGGGAGTTCGTTTT-C  48

seq1  AAACAAA-GTCACAACTTTTTGTTTAACATTCTATCTGTTTTCTGTAACA  96
      || |||| |||||||  ||||||||| |||||  ||||||| | || |||
seq2  AACCAAAGGTCACAATCTTTTGTTTACCATTCATTCTGTTTCCGGT-ACA  97

seq1  AATAATTAAGACTGTCTTGTTAATCATTCTCTCCATGCTAGGCA-GGCAC  145
      ||| | |||||||||| ||||||||| ||||||||||||||||| |||||
seq2  AATTAATAAGACTGTC-TGTTAATCA-TCTCTCCATGCTAGGCAGGGCAC  145

seq1  TTTGTCACTGGGCACCTTATA--TTCCCAGTTCATGAAGGACTTTTGTTG  193
      ||||| |||||||| ||||||  | ||||||||||||||||  |||| ||
seq2  TTTGTAACTGGGCA-CTTATAATTCCCCAGTTCATGAAGGAACTTTG-TG  193

seq1  TTATTGTTGTTTACAGTGTAAATTTA-TAATAAGAATGAATTTCTCATAT  242
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TTATTGTTGTTTACAGTGTAAATTTATTAATAAGAATGAA-TTCTCATAT  242

seq1  AAGCTGTGAAGCAGACGTTACAATATATGGTACATATAGGACTTTTGAGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGAAGCAGACGTTACAATATATGGTACATATAGGACTTTTGAGC  292

seq1  TAGGGTTTCATACAGCTTAGATTGGCTTCCAGCTTTGTGGCCAGTGATGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCATACAGCTTAGATTGGCTTCCAGCTTTGTGGCCAGTGATGG  342

seq1  CCCTGGCTCCAGATCCTGCTGCCCTTGTCTCCTGAGTGCTCGCCCCACCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTCCAGATCCTGCTGCCCTTGTCTCCTGAGTGCTCGCCCCACCA  392

seq1  CCTCACAGGCCTTACTTCCTGTTGTGAGGCGAGCACTCACATATCCCTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGGCCTTACTTCCTGTTGTGAGGCGAGCACTCACATATCCCTGG  442

seq1  CTGCTCTGGAACACTATGTAGATCAGGATGACCTCAGCATTCTCAGCAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGAACACTATGTAGATCAGGATGACCTCAGCATTCTCAGCAGT  492

seq1  CCTCTCTTTCTGCCTTTCATGTGCAGTTACAGGCATGTACCATGAAACCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCTGCCTTTCATGTGCAGTTACAGGCATGTACCATGAAACCC  542

seq1  AGGTTTTTGCTCTCCTCAGCATCTCTATGTATATTGATCGTGTGCCTCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGCTCTCCTCAGCATCTCTATGTATATTGATCGTGTGCCTCTT  592

seq1  GTCGCCTGAGTGCTGGGATTAAAGGAATATGCCACTATATCTAGCCAAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCTGAGTGCTGGGATTAAAGGAATATGCCACTATATCTAGCCAAAC  642

seq1  CCAGTTTTATCTTATCAGTAACAGATTGTTGAAAATATAACTTTTCTCCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTATCTTATCAGTAACAGATTGTTGAAAATATAACTTTTCTCCC  692

seq1  AATGACTAAATGCTGCAGTGATGAATATGAAGTATTTGTTTTGATAGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTAAATGCTGCAGTGATGAATATGAAGTATTTGTTTTGATAGTTT  742

seq1  CCTAGGAACAATTGAATACATTTAACTACATTATCTTACATGCTACACTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAACAATTGAATACATTTAACTACATTATCTTACATGCTACACTA  792

seq1  CTAAGATTTATGTAGTCAAAAATTAATACCTGGGCATGTGATTGCAAATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTTATGTAGTCAAAAATTAATACCTGGGCATGTGATTGCAAATT  842

seq1  TGATGGTGCTGGTTTGATTTGCTGGGTGGCCAGCTTTTTTACATAGGTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGCTGGTTTGATTTGCTGGGTGGCCAGCTTTTTTACATAGGTTC  892

seq1  TGTGAATTAGACTCTGGGTCCTCACATGTGTGACCAATGTTTTACTTAGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTAGACTCTGGGTCCTCACATGTGTGACCAATGTTTTACTTAGC  942

seq1  TATTTCCCTACCTGTTTTACTTGTTATTTTGTTTTTGCAATACTAGAGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTACCTGTTTTACTTGTTATTTTGTTTTTGCAATACTAGAGAC  992

seq1  CAAACCCGGGACATCAAAAGTACTTGGCTCCCAACTCTACCTCCCAATTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCGGGACATCAAAAGTACTTGGCTCCCAACTCTACCTCCCAATTT  1042

seq1  GATTTCTTACAAAACTAAAACATATGTATATTCTGATAAGTATGTATACC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTACAAAACTAAAACATATGTATATTCTGATAAGTATGTATACC  1092

seq1  TGAGTATATGTATATACGTGTGCCACAAATGTGCAGCAGTCATGTTTCTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATGTATATACGTGTGCCACAAATGTGCAGCAGTCATGTTTCTT  1142

seq1  TAAAGAATTC  1152
      ||||||||||
seq2  TAAAGAATTC  1152

seq1: chr8_108030624_108031610
seq2: B6Ng01-181A10.g_66_1050

seq1  GAATTCAGAAATCTGCCTGCCTCTGCTCCCCTACTGCTAGGATGGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCTCCCCTACTGCTAGGATGGACTGA  50

seq1  CAATGACAATCTATAGGTTTCATGTGTACACTCATCTGTACACATACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAATCTATAGGTTTCATGTGTACACTCATCTGTACACATACATG  100

seq1  ATACACACACACACACACACACACACACACACACGAGCAAAAGATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACACACGAGCAAAAGATAGAAA  150

seq1  GAAAAAGAAACAAAAGGAAAGTAAAAGTCCACTCTTCTATTTCCTGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAACAAAAGGAAAGTAAAAGTCCACTCTTCTATTTCCTGCTTA  200

seq1  CAATCCTCAAGTCTTCCTTCTCGCAGAGAAGTTGCATTTCTTCCTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAAGTCTTCCTTCTCGCAGAGAAGTTGCATTTCTTCCTACTGT  250

seq1  GAAATTGGAATTGAAGCCATCAGTCTTCAAGACATTGCCGGCCTGCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGAATTGAAGCCATCAGTCTTCAAGACATTGCCGGCCTGCTAAC  300

seq1  TGCAGCTGATCTTTGTGCTTAACTGGTTACCCTTCCATTCCTGGAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGATCTTTGTGCTTAACTGGTTACCCTTCCATTCCTGGAAAGAC  350

seq1  TCAGTCCCTCCACCCTAGCAAGGCAGGCTCTCCTGGCTCTGAGAACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCTCCACCCTAGCAAGGCAGGCTCTCCTGGCTCTGAGAACTGCC  400

seq1  AGAGGCGTCTCCTGGGTGGAGGTTGGGGGAGCTCATCCTATCTGGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGTCTCCTGGGTGGAGGTTGGGGGAGCTCATCCTATCTGGGCCTC  450

seq1  AGCCAGCAGAACCGAAACCTGTGGTAATATCACTTCATCCAGAAAACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGAACCGAAACCTGTGGTAATATCACTTCATCCAGAAAACCTC  500

seq1  GCTCTGAGCTTCAAAGTAGAGAGTGCCTCCGTCCCAGAGCTCTAGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGCTTCAAAGTAGAGAGTGCCTCCGTCCCAGAGCTCTAGGGGAC  550

seq1  TCTGCTTTCTTTCTGTCAGGGGCTCTGCTACTCTGCAGCATTGATCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTTTCTGTCAGGGGCTCTGCTACTCTGCAGCATTGATCTGAT  600

seq1  TCAGGCCAGCTCCTCCAGCCAGATCACAGGAAGGCGAACCACAGAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGCTCCTCCAGCCAGATCACAGGAAGGCGAACCACAGAGAGGA  650

seq1  ATCACCTTTCTCTTGTTCTCCACTGCTTCCCTAACAGATGATAGGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTTCTCTTGTTCTCCACTGCTTCCCTAACAGATGATAGGGAAGC  700

seq1  ACACAGGAAACACCCGAAGTGTGGGACGTGGTGGCACACGCCTGCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAAACACCCGAAGTGTGGGACGTGGTGGCACACGCCTGCCAGCT  750

seq1  CAACCTTCGGAAGATTCGTAGGACGACAGCAATGCAGAAGGACAATAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCGGAAGATTCGTAGGACGACAGCAATGCAGAAGGACAATAAAC  800

seq1  GGGAAGCCATCTTGGGCTACACAGCAGAGACTCTGTCTCAAATAAACAAC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGAAGCCATCTTGGGCTACACAGCAGAGACTCTGTCTC-AATAAACAAC  849

seq1  AAACAACAACAATAAACAGTAATAAATAATAATAAACAATAGATGATTGC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACAACAACAATAAACAGTAATAAATAATAATAAAC-ATAGATGATTGC  898

seq1  GTGAGACAGGAAAAGATGGAGGGAGGAGAGAGAGATGGTGGTGTGCTTCT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGG-AAAGATGGAGGGAGGAGAGAGAGATGGTGGTGTGCTTCT  947

seq1  GTTTTGTTTTTCTAGGCAGGGC-TTTTCTGTG-TAGCCC  987
      |||||| ||||||||||||||| ||||||||| ||||||
seq2  GTTTTG-TTTTCTAGGCAGGGCTTTTTCTGTGTTAGCCC  985