BAC Information

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BAC

Clone NameB6Ng01-182L20
Chromosome8 (Build37)
Map Location 108,097,948 - 108,270,544
singlet/doubletdoublet
Overlap geneEG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Upstream geneLOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp
Downstream geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182L20.bB6Ng01-182L20.g
ACCGA008551GA008552
length848501
definitionB6Ng01-182L20.b B6Ng01-182L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,097,948 - 108,098,794)(108,270,038 - 108,270,544)
sequence
gaattccatacacatatgcaatatgtcttgatcatatccgccattatccc
cccttggaaccccactggatcctccctaacgagttccctttaaacaattt
tttaaaaataacccagactccaattagtgctgcctgcatgcacctgacac
ccctgaagagaaatctctctctccagtagccatcaactgccaggactcag
gtagccactactgttttgaagtcctgatcctcctgcctctccctcccacg
tactgagattgtagctgcaccattattcccagttaaagttattaccccat
aaatatcctgcttcaggtattttaatatagtggaaaagcactcttactac
tgccatttctctgaagttggtgatttttgatacagggtgctacactgtat
caggctggcctgaaactcactatgttgatcaggctagtcttaaactcaca
tagatccacttagctctgtctcttgagtgctggggggttaaaagcatgtg
ccactgtgcccagtctttgatttttttttttttcccagacggtgtttctc
tgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctc
gaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggc
gtgcgccaccacgcccggccagtaaagtactcttatccccagagtggccc
tgatttgccatttaggagagtactgaggctgttctctctcaccggattta
cagagaagaacttctagaatgacccagacttgggtatccttctattcaaa
agaaaacctgggacctgcatgatggatcagcaggggcgtcgggggggg
aagtgacatcaggatgtccttttgatggggtgtggtgacagactgtgagg
acagagacgggcagggaggcttcattgttgccatgtttctttgaaagtgg
ttaagtttgactcactccattcgtttgggtccactgttactttccttcgt
tttatatcagtttctgtttggctgaacagggcctccatactatctactgt
ggtcctccagacttagctatgcagtagtctttggtaagagaagaaaaggt
gccggtaaggagactaaggtagctggtggtgtggttcctgtggtggaaag
gcagagtgagtgctgaggaagtgcttctgggctaaggacgcccttgagag
ctcctgtgacaggagagacacagagcagcaggcagcgcctccccagtcgt
cagtgtgctgccacctgggacttgtttaccttcctgagcccgtgactact
caggcctcaagctaatgacataaacgtgtgtgtgtgtgtgtgtgtgtgtg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108097948_108098794
seq2: B6Ng01-182L20.b_48_895

seq1  GAATTCCATACACATATGCAATATGTCTTGATCATATCCGCCATTATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACACATATGCAATATGTCTTGATCATATCCGCCATTATCCC  50

seq1  CCCTTGGAACCCCACTGGATCCTCCCTAACGAGTTCCCTTTAAACAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGAACCCCACTGGATCCTCCCTAACGAGTTCCCTTTAAACAATTT  100

seq1  TTTAAAAATAACCCAGACTCCAATTAGTGCTGCCTGCATGCACCTGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAACCCAGACTCCAATTAGTGCTGCCTGCATGCACCTGACAC  150

seq1  CCCTGAAGAGAAATCTCTCTCTCCAGTAGCCATCAACTGCCAGGACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGAGAAATCTCTCTCTCCAGTAGCCATCAACTGCCAGGACTCAG  200

seq1  GTAGCCACTACTGTTTTGAAGTCCTGATCCTCCTGCCTCTCCCTCCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACTACTGTTTTGAAGTCCTGATCCTCCTGCCTCTCCCTCCCACG  250

seq1  TACTGAGATTGTAGCTGCACCATTATTCCCAGTTAAAGTTATTACCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGATTGTAGCTGCACCATTATTCCCAGTTAAAGTTATTACCCCAT  300

seq1  AAATATCCTGCTTCAGGTATTTTAATATAGTGGAAAAGCACTCTTACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCTGCTTCAGGTATTTTAATATAGTGGAAAAGCACTCTTACTAC  350

seq1  TGCCATTTCTCTGAAGTTGGTGATTTTTGATACAGGGTGCTACACTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCTCTGAAGTTGGTGATTTTTGATACAGGGTGCTACACTGTAT  400

seq1  CAGGCTGGCCTGAAACTCACTATGTTGATCAGGCTAGTCTTAAACTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTGAAACTCACTATGTTGATCAGGCTAGTCTTAAACTCACA  450

seq1  TAGATCCACTTAGCTCTGTCTCTTGAGTGCTGGGGGGTTAAAAGCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCACTTAGCTCTGTCTCTTGAGTGCTGGGGGGTTAAAAGCATGTG  500

seq1  CCACTGTGCCCAGTCTTTGATTTTTTTTTTTTTCCCAGACGGTGTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGCCCAGTCTTTGATTTTTTTTTTTTTCCCAGACGGTGTTTCTC  550

seq1  TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  600

seq1  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  650

seq1  GTGCGCCACCACGCCCGGCCAGTAAAGTACTCTTATCCCCAGAGTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCACGCCCGGCCAGTAAAGTACTCTTATCCCCAGAGTGGCCC  700

seq1  TGATTTGCCA-TTAGGAGAGTACTGAGGCTGTTCTCTCTCACCGGATTTA  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCCATTTAGGAGAGTACTGAGGCTGTTCTCTCTCACCGGATTTA  750

seq1  CAGAGAAGAACTTCTAGAATGACCAAGACTT-GGTATCCCTCTATTCAAA  798
      |||||||||||||||||||||||| |||||| ||||||| ||||||||||
seq2  CAGAGAAGAACTTCTAGAATGACCCAGACTTGGGTATCCTTCTATTCAAA  800

seq1  AGAGAAACCTGGGACCTGCATGATGGATCAGCAGGGGGGTCGGGGGGGG  847
      ||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGA-AAACCTGGGACCTGCATGATGGATCAGCAGGGGCGTCGGGGGGGG  848

seq1: chr8_108270038_108270544
seq2: B6Ng01-182L20.g_69_575 (reverse)

seq1  GCACACACACACACACACACACACACGTTTATGTCATTAGCTTGAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACACGTTTATGTCATTAGCTTGAGGCCT  50

seq1  GAGTAGTCACGGGCTCAGGAAGGTAAACAAGTCCCAGGTGGCAGCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCACGGGCTCAGGAAGGTAAACAAGTCCCAGGTGGCAGCACACT  100

seq1  GACGACTGGGGAGGCGCTGCCTGCTGCTCTGTGTCTCTCCTGTCACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTGGGGAGGCGCTGCCTGCTGCTCTGTGTCTCTCCTGTCACAGGA  150

seq1  GCTCTCAAGGGCGTCCTTAGCCCAGAAGCACTTCCTCAGCACTCACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAGGGCGTCCTTAGCCCAGAAGCACTTCCTCAGCACTCACTCTG  200

seq1  CCTTTCCACCACAGGAACCACACCACCAGCTACCTTAGTCTCCTTACCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCACCACAGGAACCACACCACCAGCTACCTTAGTCTCCTTACCGG  250

seq1  CACCTTTTCTTCTCTTACCAAAGACTACTGCATAGCTAAGTCTGGAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTCTTCTCTTACCAAAGACTACTGCATAGCTAAGTCTGGAGGAC  300

seq1  CACAGTAGATAGTATGGAGGCCCTGTTCAGCCAAACAGAAACTGATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGATAGTATGGAGGCCCTGTTCAGCCAAACAGAAACTGATATAA  350

seq1  AACGAAGGAAAGTAACAGTGGACCCAAACGAATGGAGTGAGTCAAACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGGAAAGTAACAGTGGACCCAAACGAATGGAGTGAGTCAAACTTA  400

seq1  ACCACTTTCAAAGAAACATGGCAACAATGAAGCCTCCCTGCCCGTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCAAAGAAACATGGCAACAATGAAGCCTCCCTGCCCGTCTCTG  450

seq1  TCCTCACAGTCTGTCACCACACCCCATCAAAAGGACATCCTGATGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGTCTGTCACCACACCCCATCAAAAGGACATCCTGATGTCACT  500

seq1  TGAATTC  507
      |||||||
seq2  TGAATTC  507