BAC Information

Click to search

BAC

Clone NameB6Ng01-182M24
Chromosome8 (Build37)
Map Location 102,806,005 - 102,912,884
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182M24.bB6Ng01-182M24.g
ACCGA008603GA008604
length1,073539
definitionB6Ng01-182M24.b B6Ng01-182M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,911,797 - 102,912,884)(102,806,005 - 102,806,549)
sequence
gaattcttttgcaatgttaagaaaaaaaatatttatgcttcttgtctcct
cagaatcaaagacacagagacagataggagaggtgcccaggaatcaagag
gggtgactatagctgtgactcagaaaggggatatgaaaactgaaaagggc
acccatgtagaaaggcagaaatcccagtggagcaatagggacacaaaccc
atctcaaaactttccagccaaaatatattctgtttactagaaatgcaggt
acaggagatagaacaagactgagggaatcatcaaccaaaaaccagcagaa
atgagaacatatactacatatgatgtgtagttaacaggtaagaatttatg
aatggatgcctcaaaaatgataagaccaagtataccaaaacattgacatt
cactgagtcacaactgcatgtttcatcctctcataacactagataactta
ctgcttaagctttgctcagagtcctaaaagtagtctacatattatagtta
ggtactctgtctgttcgaattctgcaatataatgcaccaaacaccaagac
aatgtagaaaatatcacatagtacttttgttttgaattttgtaacttaat
tggatcctggaagaaagaaatacattattattatttggactacacacact
aaatgtactatcaagtaaattatcccttaccaaaatatgttgaagtcttt
tctgacagttttctaatgagacaagaatgaatatcactttatcctacata
agataccaacaacataacaaagaatgactcaatccaagctcagtttgaca
tatctgccaggaggaaccacctacatcagccccagctgtttatagagagc
agatttaagtaatgaaaggagtcttgaattcatctcataaaagaatttca
ggacatgtcaacttgaagcagaatcacaggattttttttttaatttgttt
gtatgtttttgtcattctgtttaaacatgagattttagtgagggtatcat
gtagtagtgatagggagctcagtatcagcatatcccatagtcatgtgact
ctcagatatcacctgcatatcat

acacttacatactaatcatgcaaaaaagatggggtaagtgggtaaaacct
agtttcattatttaaatgtcttaatcccaagccttgagtatttccatatt
agattccacccctttatcttctgaaaacaaaggaaactgctctgatggct
ttacaccatctccatgatggaacatctgagagtccattacaccagattct
gttacaggaggctctgtgatccacggaacatttatttcagcttcccagag
attccagtaagctgcttatatttctgtttgggtagaagattttgttggga
gggcaactgatagattatcttacctggttctactagcagttggtagtaga
catgatagacaattatttccaaattcatcacataaaggaaaattacaaaa
caaatgttaagattctcctgtttcattaatggcacactgtttgttgcatt
tactggtattttccaaatctctaaccctgatttcttatttaccaagaaaa
aataatcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102911797_102912884
seq2: B6Ng01-182M24.b_44_1116 (reverse)

seq1  ATGATATTCCAGGGTGATATTCTTGAGAAGTTCACATGACTATTGGGATA  50
      ||||||| |   ||||||||   |||||   ||||||||||| |||||||
seq2  ATGATATGC--AGGTGATAT--CTGAGA--GTCACATGACTA-TGGGATA  43

seq1  TGGCTGATTCCCTGAGCTCCCTATCACTTACTTCCATGGATAACCCTCAC  100
      | ||||||   |||||||||||||||| ||| | ||| ||| ||||||||
seq2  T-GCTGAT--ACTGAGCTCCCTATCAC-TAC-TACAT-GAT-ACCCTCAC  86

seq1  TAAAATCTCATGTTTAAAACAGAATGAACAAAAACATACAAACAAATT-A  149
      ||||||||||||||| |||||||||| ||||||||||||||||||||| |
seq2  TAAAATCTCATGTTT-AAACAGAATG-ACAAAAACATACAAACAAATTAA  134

seq1  AAAAAAAATCCTGTGATTCTGCTTCAAGTTGACATGTCCTGAAATTCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCTGTGATTCTGCTTCAAGTTGACATGTCCTGAAATTCTTT  184

seq1  TATGAGATGAATTCAAGACTCCTTTCATTACTTAAATCTGCTCTCTATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATGAATTCAAGACTCCTTTCATTACTTAAATCTGCTCTCTATAA  234

seq1  ACAGCTGGGGCTGATGTAGGTGGTTCCTCCTGGCAGATATGTCAAACTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGGCTGATGTAGGTGGTTCCTCCTGGCAGATATGTCAAACTGA  284

seq1  GCTTGGATTGAGTCATTCTTTGTTATGTTGTTGGTATCTTATGTAGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTGAGTCATTCTTTGTTATGTTGTTGGTATCTTATGTAGGATA  334

seq1  AAGTGATATTCATTCTTGTCTCATTAGAAAACTGTCAGAAAAGACTTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATATTCATTCTTGTCTCATTAGAAAACTGTCAGAAAAGACTTCAA  384

seq1  CATATTTTGGTAAGGGATAATTTACTTGATAGTACATTTAGTGTGTGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTGGTAAGGGATAATTTACTTGATAGTACATTTAGTGTGTGTAG  434

seq1  TCCAAATAATAATAATGTATTTCTTTCTTCCAGGATCCAATTAAGTTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAATAATAATGTATTTCTTTCTTCCAGGATCCAATTAAGTTACA  484

seq1  AAATTCAAAACAAAAGTACTATGTGATATTTTCTACATTGTCTTGGTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAACAAAAGTACTATGTGATATTTTCTACATTGTCTTGGTGTT  534

seq1  TGGTGCATTATATTGCAGAATTCGAACAGACAGAGTACCTAACTATAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTATATTGCAGAATTCGAACAGACAGAGTACCTAACTATAATA  584

seq1  TGTAGACTACTTTTAGGACTCTGAGCAAAGCTTAAGCAGTAAGTTATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTACTTTTAGGACTCTGAGCAAAGCTTAAGCAGTAAGTTATCTA  634

seq1  GTGTTATGAGAGGATGAAACATGCAGTTGTGACTCAGTGAATGTCAATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGAGAGGATGAAACATGCAGTTGTGACTCAGTGAATGTCAATGT  684

seq1  TTTGGTATACTTGGTCTTATCATTTTTGAGGCATCCATTCATAAATTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATACTTGGTCTTATCATTTTTGAGGCATCCATTCATAAATTCTT  734

seq1  ACCTGTTAACTACACATCATATGTAGTATATGTTCTCATTTCTGCTGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTAACTACACATCATATGTAGTATATGTTCTCATTTCTGCTGGTT  784

seq1  TTTGGTTGATGATTCCCTCAGTCTTGTTCTATCTCCTGTACCTGCATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGATGATTCCCTCAGTCTTGTTCTATCTCCTGTACCTGCATTTC  834

seq1  TAGTAAACAGAATATATTTTGGCTGGAAAGTTTTGAGATGGGTTTGTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACAGAATATATTTTGGCTGGAAAGTTTTGAGATGGGTTTGTGTC  884

seq1  CCTATTGCTCCACTGGGATTTCTGCCTTTCTACATGGGTGCCCTTTTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCTCCACTGGGATTTCTGCCTTTCTACATGGGTGCCCTTTTCAG  934

seq1  TTTTCATATCCCCTTTCTGAGTCACAGCTATAGTCACCCCTCTTGATTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATCCCCTTTCTGAGTCACAGCTATAGTCACCCCTCTTGATTCC  984

seq1  TGGGCACCTCTCCTATCTGTCTCTGTGTCTTTGATTCTGAGGAGACAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACCTCTCCTATCTGTCTCTGTGTCTTTGATTCTGAGGAGACAAGA  1034

seq1  AGCATAAATATTTTTTTTCTTAACATTGCAAAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATATTTTTTTTCTTAACATTGCAAAAGAATTC  1073


seq1: chr8_102806005_102806549
seq2: B6Ng01-182M24.g_61_605

seq1  GAATTCACACTTACATACTAATCATGCAAAAAAGATGGGGTAAGTGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTTACATACTAATCATGCAAAAAAGATGGGGTAAGTGGGTA  50

seq1  AAACCTAGTTTCATTATTTAAATGTCTTAATCCCAAGCCTTGAGTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTTTCATTATTTAAATGTCTTAATCCCAAGCCTTGAGTATTTC  100

seq1  CATATTAGATTCCACCCCTTTATCTTCTGAAAACAAAGGAAACTGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGATTCCACCCCTTTATCTTCTGAAAACAAAGGAAACTGCTCTG  150

seq1  ATGGCTTTACACCATCTCCATGATGGAACATCTGAGAGTCCATTACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTACACCATCTCCATGATGGAACATCTGAGAGTCCATTACACCA  200

seq1  GATTCTGTTACAGGAGGCTCTGTGATCCACGGAACATTTATTTCAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTACAGGAGGCTCTGTGATCCACGGAACATTTATTTCAGCTTC  250

seq1  CCAGAGATTCCAGTAAGCTGCTTATATTTCTGTTTGGGTAGAAGATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATTCCAGTAAGCTGCTTATATTTCTGTTTGGGTAGAAGATTTTG  300

seq1  TTGGGAGGGCAACTGATAGATTATCTTACCTGGTTCTACTAGCAGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGCAACTGATAGATTATCTTACCTGGTTCTACTAGCAGTTGGT  350

seq1  AGTAGAAATGATAGACAATTATTTCCAAATTCATCACATAAAGGAAAATT  400
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATGATAGACAATTATTTCCAAATTCATCACATAAAGGAAAATT  400

seq1  ACAAAACAAATGTTAAGATTCTCCTGTTTCATTAATGGCACACTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAATGTTAAGATTCTCCTGTTTCATTAATGGCACACTGTTTGT  450

seq1  TGCATTTACTGGTATTTTCCAAATCTCTAACCCTGATTTCTTATTTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACTGGTATTTTCCAAATCTCTAACCCTGATTTCTTATTTACCA  500

seq1  AGAAAAAATAATCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATAATCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  545


| Home | SequenceCutter | Blast | Download |