BAC Information

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BAC

Clone NameB6Ng01-187I20
Chromosome8 (Build37)
Map Location 50,998,714 - 51,114,923
singlet/doubletdoublet
Overlap geneLOC100039919
Upstream geneLOC100039866, 4930555F03Rik
Downstream geneEG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187I20.bB6Ng01-187I20.g
ACCGA012101GA012102
length1,2081,143
definitionB6Ng01-187I20.b B6Ng01-187I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,998,714 - 50,999,898)(51,113,786 - 51,114,923)
sequence
gaattccatctactttcagaaaatcccatggacaacaaatgttcatccta
tcctctttctgtctgcatcattttccatctctatttgaacttatccaaac
tccatctttattactatatatgactttagaaattgatattgaaaaatatt
tcctgtttcacttgcatgctttatgtgtgttttgtttcacttccacacct
tttgaagatattatcatttaaataaatagcatatgtataggtattttgcc
tagatatatgtctttgtatcacatttgtgcctggtgtacaaaaggccaga
caccctttaacggaaagaacagattattatgagctatcatatgggttgtt
ggaattgaatcggggtgttctttatgagcaacaagtgttgttaactgttg
agaaatctcctctgcccctcaggttttacagttgacttcaccctttttcc
cttctatccattctaagtaaaaagcagaacactaaaagtgttcctagtac
taaatggaataaaaagtagaacattcatttttttgtttccattattttac
attgcaatcctgataatttacctaattttattcagcaaggagtgagggtg
cactcttgcaattctaataaggagttaaaggcaggagaagcaggagcttg
tggtgattctggacaatataaaaatacccacccctcgaacacacacacac
acacacacacacacacacacacacacacattctctctctctcacacacac
aaactcacacacactcacatagacacatttacatacatacaaacacatac
atacactttcagactcacagagacagagacagagagagacacacacacaa
tgatcaagtattccaatagtagatatataaccaaaatgaaagatgcgagt
atcctgaaggtgtaactgccctctcattccttttgtaagaccatgccaaa
gtagcttaaggaatggaaaatatttaagtattccatcaatttatgagtac
catgaagaaaaaggtttagttacctcccatcatatttgtaagaaaaaaat
gaagtgcaatcctgaatatatgagaagcaaaatataaaactggtgatgaa
cccactgtaaatgaaaataggcaggcatgaaaagaaaagggaacctatat
taaccacatgccaaatggaaatatttgaatgttcagagggttgagaatgt
gtgaaaag

gaattcatctaaaacaatgtatgtaaattatggtagtcaacaatttaaag
gcaaatacatttggaacaatgtgtatgaattatgtacaaaataattaatt
tctatagtagaaaacaatatataactcactccatgtcatacatagtgaat
acagaagtgtttctatagttttctaaataaaatacgtgtgatatttggtt
atgtttttatttttttatttcagtttattctgtgaagatgcaaataactt
ttgaatacagaacatcctagggacttcatacatttaattttccattaata
gttataatatgtttaaggaaaatgttagtataatcgttcatttgaaccta
agagatttacttaatctctgtgtaacctgtgagctaagacaccatctacc
tgactgcctcatcaacccttaaatgatggctgattgacttagaaagtaga
gaaaaaaacgctatgtagagcaaaataagattaacttattcccactcaag
agaactccagttcattaagttcagatatcctctttaacagagcaaatgtc
acctggtattctttgcagaactctctattcagggcagaatctaggaaaac
agacaaattacacctgttcatatgtagtatgttatttatcatttaagacc
tagaaactacctatttttctgccagcacccattatccactaacacattaa
tctgttaccagaaagacatacaactggtatgccttgtcagttgccatgca
tatgctgttcatgctttcattgttaaatccaatgttttgttaattttcaa
ttgtttttttttttctgaaagaatgaatggttttcttccctataaagtga
ccactgacttaatttcaagatcatgaaatttaaaagaaatatcttggaat
gagtcatagctctcaatattctccattataatgaatttaccagtctttga
tcaaaggaggaattgttttagcaggtagattagtcattttgaattttcat
tgtctgtggtttgatgttaagcatgtgacaaacactttatggaagctttc
tttacgtgtattatcatcttcacataatggatctatgatatattctttca
gtgtcaactattcagaatacaatagtattctagatgatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50998714_50999898
seq2: B6Ng01-187I20.b_49_1256

seq1  GAATTCCATCTACTTTCAGAAAATCCCATGGACAACAAATGTTCATCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTACTTTCAGAAAATCCCATGGACAACAAATGTTCATCCTA  50

seq1  TCCTCTTTCTGTCTGCATCATTTTCCATCTCTATTTGAACTTATCCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCTGTCTGCATCATTTTCCATCTCTATTTGAACTTATCCAAAC  100

seq1  TCCATCTTTATTACTATATATGACTTTAGAAATTGATATTGAAAAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTATTACTATATATGACTTTAGAAATTGATATTGAAAAATATT  150

seq1  TCCTGTTTCACTTGCATGCTTTATGTGTGTTTTGTTTCACTTCCACACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCACTTGCATGCTTTATGTGTGTTTTGTTTCACTTCCACACCT  200

seq1  TTTGAAGATATTATCATTTAAATAAATAGCATATGTATAGGTATTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATATTATCATTTAAATAAATAGCATATGTATAGGTATTTTGCC  250

seq1  TAGATATATGTCTTTGTATCACATTTGTGCCTGGTGTACAAAAGGCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATGTCTTTGTATCACATTTGTGCCTGGTGTACAAAAGGCCAGA  300

seq1  CACCCTTTAACGGAAAGAACAGATTATTATGAGCTATCATATGGGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTAACGGAAAGAACAGATTATTATGAGCTATCATATGGGTTGTT  350

seq1  GGAATTGAATCGGGGTGTTCTTTATGAGCAACAAGTGTTGTTAACTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAATCGGGGTGTTCTTTATGAGCAACAAGTGTTGTTAACTGTTG  400

seq1  AGAAATCTCCTCTGCCCCTCAGGTTTTACAGTTGACTTCACCCTTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCCTCTGCCCCTCAGGTTTTACAGTTGACTTCACCCTTTTTCC  450

seq1  CTTCTATCCATTCTAAGTAAAAAGCAGAACACTAAAAGTGTTCCTAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCATTCTAAGTAAAAAGCAGAACACTAAAAGTGTTCCTAGTAC  500

seq1  TAAATGGAATAAAAAGTAGAACATTCATTTTTTTGTTTCCATTATTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAATAAAAAGTAGAACATTCATTTTTTTGTTTCCATTATTTTAC  550

seq1  ATTGCAATCCTGATAATTTACCTAATTTTATTCAGCAAGGAGTGAGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATCCTGATAATTTACCTAATTTTATTCAGCAAGGAGTGAGGGTG  600

seq1  CACTCTTGCAATTCTAATAAGGAGTTAAAGGCAGGAGAAGCAGGAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGCAATTCTAATAAGGAGTTAAAGGCAGGAGAAGCAGGAGCTTG  650

seq1  TGGTGATTCTGGACAATATAAAAATACCCACCCCTCGAACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTCTGGACAATATAAAAATACCCACCCCTCGAACACACACACAC  700

seq1  ACACACACACACACACACACACACACACATTCTCTCTCTCTCACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATTCTCTCTCTCTCACACACAC  750

seq1  AAACTCACACACACTCACATAGACACATTTACATACATACAAACACATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACACACACTCACATAGACACATTTACATACATACAAACACATAC  800

seq1  ATACACTTTCAGACTCACAGAGACAGAGACAGAGAGAGACACACACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTTCAGACTCACAGAGACAGAGACAGAGAGAGACACACACACAA  850

seq1  TGATCAAGTATTCCAATAGTAGATATATAACC-AAATGAAAGATGCGAGT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATCAAGTATTCCAATAGTAGATATATAACCAAAATGAAAGATGCGAGT  900

seq1  ATCCTGAAGGTGTAACTGCCCTCTCATTCCTTTTGT-AGACCATGCCAAA  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCTGAAGGTGTAACTGCCCTCTCATTCCTTTTGTAAGACCATGCCAAA  950

seq1  GTAGC-TAAGGAATGGAAATAATTTAAGTATT-CATCAATTTATGAGTA-  995
      ||||| |||||||||||||  ||||||||||| |||||||||||||||| 
seq2  GTAGCTTAAGGAATGGAAAATATTTAAGTATTCCATCAATTTATGAGTAC  1000

seq1  CATGAAGAAAAA-GTTTAGTTAC--TCCATCAATATTTGTAAG-AAAAAA  1041
      |||||||||||| ||||||||||   ||||| ||||||||||| ||||||
seq2  CATGAAGAAAAAGGTTTAGTTACCTCCCATC-ATATTTGTAAGAAAAAAA  1049

seq1  TG-AGTGCAATCCTGATATAT-TGAG-AGC-AAATATAAAACT-GTGATG  1086
      || ||||||||||||| |||| |||| ||| |||||||||||| ||||||
seq2  TGAAGTGCAATCCTGA-ATATATGAGAAGCAAAATATAAAACTGGTGATG  1098

seq1  -ACCCACTGTTAAATG-AAATAGGCAGGCATAGAAAGAAA--GGAA-CTA  1131
       |||||||| |||||| ||||||||||||||  |||||||  |||| |||
seq2  AACCCACTG-TAAATGAAAATAGGCAGGCATGAAAAGAAAAGGGAACCTA  1147

seq1  TA-TAACCACATGC--AATTGAAATATTTGATGTTTCAGA-GGTTGAGA-  1176
      || |||||||||||  ||| |||||||||||   |||||| |||||||| 
seq2  TATTAACCACATGCCAAATGGAAATATTTGAATGTTCAGAGGGTTGAGAA  1197

seq1  --TGTGAAAAG  1185
        |||||||||
seq2  TGTGTGAAAAG  1208


seq1: chr8_51113786_51114923
seq2: B6Ng01-187I20.g_66_1208 (reverse)

seq1  TCATCAATCATCTAGGAATACTTATTGTATTCTGAATAGTTGACACTG-A  49
      ||||| |||||||| |||||| |||||||||||||||||||||||||| |
seq2  TCATC-ATCATCTA-GAATAC-TATTGTATTCTGAATAGTTGACACTGAA  47

seq1  AGATTATATCATAGA-CCATTATGGTGAAGATGATAATACACGTAAAGAA  98
      ||| ||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AGAATATATCATAGATCCATTAT-GTGAAGATGATAATACACGTAAAGAA  96

seq1  AGCTTCCATTAAAGTGTTTGTCACATGCTTAACATC-AACCACAGAC-AT  146
      |||||||| ||||||||||||||||||||||||||| |||||||||| ||
seq2  AGCTTCCA-TAAAGTGTTTGTCACATGCTTAACATCAAACCACAGACAAT  145

seq1  GAAATTTCAAAATGACTAATCTACCTGCT-AAACATTTCCTCTTTTGATC  195
      |||| |||||||||||||||||||||||| ||||| |||||| |||||||
seq2  GAAAATTCAAAATGACTAATCTACCTGCTAAAACAATTCCTCCTTTGATC  195

seq1  AAAGACTGGTAAATTCATTATA--TGAGAATAATTGAGAGCTATGACTCA  243
      ||||||||||||||||||||||   |||||| ||||||||||||||||||
seq2  AAAGACTGGTAAATTCATTATAATGGAGAAT-ATTGAGAGCTATGACTCA  244

seq1  TTCCAAGATATTTCTTTTAAATTTCATGATCTTGAAATTAAGTCAGTGGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATATTTCTTTTAAATTTCATGATCTTGAAATTAAGTCAGTGGT  294

seq1  CACTTTATA-GGAAG-AAACCATTCATTCTTTCAG-AAAAAAAAAACAAT  340
      ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  CACTTTATAGGGAAGAAAACCATTCATTCTTTCAGAAAAAAAAAAACAAT  344

seq1  TG-AAATTAACAAAACATTGGATTTAACAATGAAAGCATGAACAGCATAT  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTAACAAAACATTGGATTTAACAATGAAAGCATGAACAGCATAT  394

seq1  GCATGGCAACTGACAAGGCATACCAGTTGTATGTCTTTCTGGTAACAGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAACTGACAAGGCATACCAGTTGTATGTCTTTCTGGTAACAGAT  444

seq1  TAATGTGTTAGTGGATAATGGGTGCTGGCAGAAAAATAGGTAGTTTCTAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTAGTGGATAATGGGTGCTGGCAGAAAAATAGGTAGTTTCTAG  494

seq1  GTCTTAAATGATAAATAACATACTACATATGAACAGGTGTAATTTGTCTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAATGATAAATAACATACTACATATGAACAGGTGTAATTTGTCTG  544

seq1  TTTTCCTAGATTCTGCCCTGAATAGAGAGTTCTGCAAAGAATACCAGGTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGATTCTGCCCTGAATAGAGAGTTCTGCAAAGAATACCAGGTG  594

seq1  ACATTTGCTCTGTTAAAGAGGATATCTGAACTTAATGAACTGGAGTTCTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTCTGTTAAAGAGGATATCTGAACTTAATGAACTGGAGTTCTC  644

seq1  TTGAGTGGGAATAAGTTAATCTTATTTTGCTCTACATAGCGTTTTTTTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGGGAATAAGTTAATCTTATTTTGCTCTACATAGCGTTTTTTTCT  694

seq1  CTACTTTCTAAGTCAATCAGCCATCATTTAAGGGTTGATGAGGCAGTCAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTAAGTCAATCAGCCATCATTTAAGGGTTGATGAGGCAGTCAG  744

seq1  GTAGATGGTGTCTTAGCTCACAGGTTACACAGAGATTAAGTAAATCTCTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGTGTCTTAGCTCACAGGTTACACAGAGATTAAGTAAATCTCTT  794

seq1  AGGTTCAAATGAACGATTATACTAACATTTTCCTTAAACATATTATAACT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAAATGAACGATTATACTAACATTTTCCTTAAACATATTATAACT  844

seq1  ATTAATGGAAAATTAAATGTATGAAGTCCCTAGGATGTTCTGTATTCAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGAAAATTAAATGTATGAAGTCCCTAGGATGTTCTGTATTCAAA  894

seq1  AGTTATTTGCATCTTCACAGAATAAACTGAAATAAAAAAATAAAAACATA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGCATCTTCACAGAATAAACTGAAATAAAAAAATAAAAACATA  944

seq1  ACCAAATATCACACGTATTTTATTTAGAAAACTATAGAAACACTTCTGTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATATCACACGTATTTTATTTAGAAAACTATAGAAACACTTCTGTA  994

seq1  TTCACTATGTATGACATGGAGTGAGTTATATATTGTTTTCTACTATAGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATGTATGACATGGAGTGAGTTATATATTGTTTTCTACTATAGAA  1044

seq1  ATTAATTATTTTGTACATAATTCATACACATTGTTCCAAATGTATTTGCC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATTTTGTACATAATTCATACACATTGTTCCAAATGTATTTGCC  1094

seq1  TTTAAATTGTTGACTACCATAATTTACATACATTGTTTTAGATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGTTGACTACCATAATTTACATACATTGTTTTAGATGAATTC  1143


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