BAC Information

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BAC

Clone NameB6Ng01-188G18
Chromosome8 (Build37)
Map Location 129,322,048 - 129,466,954
singlet/doubletdoublet
Overlap geneTomm20
Upstream geneE330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
Downstream geneRbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188G18.bB6Ng01-188G18.g
ACCGA012726GA012727
length1,1271,191
definitionB6Ng01-188G18.b B6Ng01-188G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,322,048 - 129,323,173)(129,465,784 - 129,466,954)
sequence
gaattcattttccatcaaggatgtccttggccctggtgtcggtccgattc
actcagcgttggcctggttagtattcagcaaggtgttggccctgacttaa
cacgtttatttcctgaactgttcttacgccaaagcacggcctctttccgc
aaacctggaagcttcccaagcagacaatcccaagtctctaaagctctgct
gcggaccaggcgcgcggatttcccagactggccatgcgtggctttttgct
gctccctggacacccccttttgttcccagtcattgccactgtgagcccag
acctgttctccttcctaattggtctggagctttctttcttcccacaatgc
ccttggcaggaacggcccacatctttatgagcagatcattgcgtggaaag
tcacattaaaatcaaggcagttacctgggtaagtacaggcaggacaaaca
cccactcgggtctgaggtactggaaagtagagagtgtgaagcagttcggg
gactttttacttcccttcgtcctctgtgctgggtggttttatgttaagtt
gacatagactaaagtcatctgagaggagaaaaatctcaattatgcctcta
taagatcagactgtaggcaagcctaactcagacaccctctcatgatccat
gtcattgacaggactgcccctgacttcccctcagataggcctagcctggt
ctactaaattacatacacccatttcctggatgtccagaacccatgtaaac
ctcggatcagccccatgtattcagggtgcttctatggaaagatgggagat
ggagacaaaatccaaaaaaaatcaagggctagctagcctagttgtccaca
gcagcaaaataacaaagaaattctgtctcaaaacacaaggtgaagaccaa
catacagggttgtcatatgaccttccacacaagtgccatggcacacacac
gtgtgctcccgtgtgcaagtgcatgtgcacacacaccaccccccctctct
cttacccacacacacacacacacaccactgcacactaccacaacacatcg
tagagggggttggttaaaggaaaaaaagaaagagccagcagtggtggtaa
cacatctttgattccatcactctggag
gaattcactaaatatgtgatttgttttaaataatggcttgcttggatttg
gagtggttctgaatttaggctttgcatgcttttgttttgagacaccatct
ctaatcctggctgttcttgaactcagagattccccttgtcctgtgctgag
attaaaggcattcacctggcttacagtttggctttgttttttgtttaatg
aatatagttgtttaaacttggtagatttacaagtgtctcaggcttatatc
aacacataactatccttgctaattgaatgtgtgactctttcagcctgttt
accattgtgactttattacagaggtagtcttatgaaactgaaggcagaac
tctagtcatcctgttaaaaatgaaacacattaaggatcttatctttatct
tctatgtccatgtcctgcattgggtagatggttgtggaaataaagttcat
tgcctttttattattttctcaaaattctggtttagcatattgtatttttc
attccttattacccagttttgctttgtgaggtggttttcatccgcatgct
gtgtctttggtgatacaggtaaaggaagacaaggtggtctggagtcaagc
gcttgagtaactgctcatcacttacgttttaggtcttagccaacaggtcc
ttcagttccagttgactcagattcatagactactttaaggttttcagaga
tgttttgcttggttgatggcttttgcttttcttggcaagactgatcttgg
agagttaagttctcttgcttacaatttgcctatctagtgcatagagaaaa
tgcctgtcacttgtaccacctggctgtttgtctaggtcattgtatttgag
taattgttacttctctaggtattgggtatttaacgataggatgcccagaa
tggcaggatatgagcctagggttcttcgtaccacatgtttacatctgtta
aattccaaaggctgctggaagctcatattacagatactaagatgagttac
ttggatgagttttatttgagtaccagttcacctctgggttgttagtgtaa
agcacctgattataaaccttgcagttgatcctcattaagcttaacaattc
tttcttagggccatacctgttgtcaagagcacctgaagcccatgtacctt
acagacctggtagttaacaaatttcggatggggctctaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129322048_129323173
seq2: B6Ng01-188G18.b_51_1177

seq1  GAATTCATTTTCCATCAAGGATGTCCTTGGCCCTGGTGTCGGTCCGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCCATCAAGGATGTCCTTGGCCCTGGTGTCGGTCCGATTC  50

seq1  ACTCAGCGTTGGCCTGGTTAGTATTCAGCAAGGTGTTGGCCCTGACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCGTTGGCCTGGTTAGTATTCAGCAAGGTGTTGGCCCTGACTTAA  100

seq1  CACGTTTATTTCCTGAACTGTTCTTACGCCAAAGCACGGCCTCTTTCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTATTTCCTGAACTGTTCTTACGCCAAAGCACGGCCTCTTTCCGC  150

seq1  AAACCTGGAAGCTTCCCAAGCAGACAATCCCAAGTCTCTAAAGCTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGAAGCTTCCCAAGCAGACAATCCCAAGTCTCTAAAGCTCTGCT  200

seq1  GCGGACCAGGCGCGCGGATTTCCCAGACTGGCCATGCGTGGCTTTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACCAGGCGCGCGGATTTCCCAGACTGGCCATGCGTGGCTTTTTGCT  250

seq1  GCTCCCTGGACACCCCCTTTTGTTCCCAGTCATTGCCACTGTGAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGACACCCCCTTTTGTTCCCAGTCATTGCCACTGTGAGCCCAG  300

seq1  ACCTGTTCTCCTTCCTAATTGGTCTGGAGCTTTCTTTCTTCCCACAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCTCCTTCCTAATTGGTCTGGAGCTTTCTTTCTTCCCACAATGC  350

seq1  CCTTGGCAGGAACGGCCCACATCTTTATGAGCAGATCATTGCGTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGGAACGGCCCACATCTTTATGAGCAGATCATTGCGTGGAAAG  400

seq1  TCACATTAAAATCAAGGCAGTTACCTGGGTAAGTACAGGCAGGACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAAAATCAAGGCAGTTACCTGGGTAAGTACAGGCAGGACAAACA  450

seq1  CCCACTCGGGTCTGAGGTACTGGAAAGTAGAGAGTGTGAAGCAGTTCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCGGGTCTGAGGTACTGGAAAGTAGAGAGTGTGAAGCAGTTCGGG  500

seq1  GACTTTTTACTTCCCTTCGTCCTCTGTGCTGGGTGGTTTTATGTTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTACTTCCCTTCGTCCTCTGTGCTGGGTGGTTTTATGTTAAGTT  550

seq1  GACATAGACTAAAGTCATCTGAGAGGAGAAAAATCTCAATTATGCCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGACTAAAGTCATCTGAGAGGAGAAAAATCTCAATTATGCCTCTA  600

seq1  TAAGATCAGACTGTAGGCAAGCCTAACTCAGACACCCTCTCATGATCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAGACTGTAGGCAAGCCTAACTCAGACACCCTCTCATGATCCAT  650

seq1  GTCATTGACAGGACTGCCCCTGACTTCCCCTCAGATAGGCCTAGCCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGACAGGACTGCCCCTGACTTCCCCTCAGATAGGCCTAGCCTGGT  700

seq1  CTACTAAATTACATACACCCATTTCCTGGATGTCCAGAACCCATGTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAATTACATACACCCATTTCCTGGATGTCCAGAACCCATGTAAAC  750

seq1  CTCGGATCAGCCCCATGTATTCAGGGTGCTTCTATGGAAAGATGGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGATCAGCCCCATGTATTCAGGGTGCTTCTATGGAAAGATGGGAGAT  800

seq1  GGAGACAAAATCCAAAAAAAATC-AGGGCTAGCTAGCCTAG-TGTCCACA  848
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GGAGACAAAATCCAAAAAAAATCAAGGGCTAGCTAGCCTAGTTGTCCACA  850

seq1  GCAGCAAAATAACAAAGAAATTCTGTCTCAAAACACAAGGTGAAGACCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAATAACAAAGAAATTCTGTCTCAAAACACAAGGTGAAGACCAA  900

seq1  CATACAGGGTTGTCATATGACC-TCCACACAAGTGCCATGGCACACACAC  947
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATACAGGGTTGTCATATGACCTTCCACACAAGTGCCATGGCACACACAC  950

seq1  GTGTGCTCCCGTGTGCAAGTGCATGTGCACACACACCACCCCCCCTCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCCCGTGTGCAAGTGCATGTGCACACACACCACCCCCCCTCTCT  1000

seq1  CTTACACACACACACACACACACACACAC-ACACACACACAC-ACACACG  1045
      ||||| ||||||||||||||||||| |||  |||||   ||| |||||  
seq2  CTTACCCACACACACACACACACAC-CACTGCACACTACCACAACACATC  1049

seq1  GGAGAAGGGGGGTTGGGTTAAAAAGAAAAAAGAAAGAGCCAGGCAGTGGT  1095
      | |||  ||||||| |||||||   |||||||||||||||| ||||||||
seq2  GTAGA--GGGGGTT-GGTTAAAGGAAAAAAAGAAAGAGCCA-GCAGTGGT  1095

seq1  GGT-ACACATCTTTGATCCCATCACTCGGGAG  1126
      ||| ||||||||||||| ||||||||| ||||
seq2  GGTAACACATCTTTGATTCCATCACTCTGGAG  1127

seq1: chr8_129465784_129466954
seq2: B6Ng01-188G18.g_68_1258 (reverse)

seq1  GGTT-GAGCCCCATCCCGAAATTGTTAACTAC--GGGCTGGTTAGTTAAC  47
      |||| |||||||||||  || |||||||||||  || || || || | ||
seq2  GGTTAGAGCCCCATCCGAAATTTGTTAACTACCAGGTCT-GTAAGGT-AC  48

seq1  AATGGCTTC-GGTGCTCT--GCAACA-GTAT-GCCCTAAGAAAGAATTGT  92
      |  |||||| ||||||||   ||||| |||| ||||||||||||||||||
seq2  ATGGGCTTCAGGTGCTCTTGACAACAGGTATGGCCCTAAGAAAGAATTGT  98

seq1  T-AGCTT-ATGGGGATC-ACTGCCAGGTTTATATTCA-GTGCCTTACACT  138
      | ||||| ||| ||||| ||||| ||||||||| ||| |||| |||||||
seq2  TAAGCTTAATGAGGATCAACTGCAAGGTTTATAATCAGGTGCTTTACACT  148

seq1  TACA--CCAGA-GTGAACCTGGTACTC-AATAAAACTCATCC-AGTAACT  183
       |||  ||||| ||||| ||||||||| |||||||||||||| |||||||
seq2  AACAACCCAGAGGTGAA-CTGGTACTCAAATAAAACTCATCCAAGTAACT  197

seq1  CATC-TAGTATCTGTAATTATGAGGCTTCCAGCAGCC-TTGGAA-TTAAC  230
      |||| |||||||||||| ||||| ||||||||||||| |||||| |||||
seq2  CATCTTAGTATCTGTAA-TATGA-GCTTCCAGCAGCCTTTGGAATTTAAC  245

seq1  AGATGTAAAACATGTGGTACG-AGAA-CCTAGGCTCATATCCTGCCATTC  278
      |||||| |||||||||||||| |||| |||||||||||||||||||||||
seq2  AGATGT-AAACATGTGGTACGAAGAACCCTAGGCTCATATCCTGCCATTC  294

seq1  T-GGCATCCTATCGTTAAATACCCAATACCTAGAG-AGTAACAATTACTC  326
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGCATCCTATCGTTAAATACCCAATACCTAGAGAAGTAACAATTACTC  344

seq1  -AATACAATGACCTAGAC-AACAGCCAGGTGGTACAAGTGACAGGCATTT  374
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATACAATGACCTAGACAAACAGCCAGGTGGTACAAGTGACAGGCATTT  394

seq1  TCTCTATGCACTAGATAGGCAAATTGTAAGCAAGAGAACTTAACTCTCCA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGCACTAGATAGGCAAATTGTAAGCAAGAGAACTTAACTCTCCA  444

seq1  AGATCAGTCTTGCCAAGAAAAGCAAAAGCCATCAACCAAGCAAAACATCT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTCTTGCCAAGAAAAGCAAAAGCCATCAACCAAGCAAAACATCT  494

seq1  CTGAAAACCTTAAAGTAGTCTATGAATCTGAGTCAACTGGAACTGAAGGA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACCTTAAAGTAGTCTATGAATCTGAGTCAACTGGAACTGAAGGA  544

seq1  CCTGTTGGCTAAGACCTAAAACGTAAGTGATGAGCAGTTACTCAAGCGCT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGCTAAGACCTAAAACGTAAGTGATGAGCAGTTACTCAAGCGCT  594

seq1  TGACTCCAGACCACCTTGTCTTCCTTTACCTGTATCACCAAAGACACAGC  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGACCACCTTGTCTTCCTTTACCTGTATCACCAAAGACACAGC  644

seq1  ATGCGGATGAAAACCACCTCACAAAGCAAAACTGGGTAATAAGGAATGAA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGATGAAAACCACCTCACAAAGCAAAACTGGGTAATAAGGAATGAA  694

seq1  AAATACAATATGCTAAACCAGAATTTTGAGAAAATAATAAAAAGGCAATG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATATGCTAAACCAGAATTTTGAGAAAATAATAAAAAGGCAATG  744

seq1  AACTTTATTTCCACAACCATCTACCCAATGCAGGACATGGACATAGAAGA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTTCCACAACCATCTACCCAATGCAGGACATGGACATAGAAGA  794

seq1  TAAAGATAAGATCCTTAATGTGTTTCATTTTTAACAGGATGACTAGAGTT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAAGATCCTTAATGTGTTTCATTTTTAACAGGATGACTAGAGTT  844

seq1  CTGCCTTCAGTTTCATAAGACTACCTCTGTAATAAAGTCACAATGGTAAA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCAGTTTCATAAGACTACCTCTGTAATAAAGTCACAATGGTAAA  894

seq1  CAGGCTGAAAGAGTCACACATTCAATTAGCAAGGATAGTTATGTGTTGAT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAAGAGTCACACATTCAATTAGCAAGGATAGTTATGTGTTGAT  944

seq1  ATAAGCCTGAGACACTTGTAAATCTACCAAGTTTAAACAACTATATTCAT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTGAGACACTTGTAAATCTACCAAGTTTAAACAACTATATTCAT  994

seq1  TAAACAAAAAACAAAGCCAAACTGTAAGCCAGGTGAATGCCTTTAATCTC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAAACAAAGCCAAACTGTAAGCCAGGTGAATGCCTTTAATCTC  1044

seq1  AGCACAGGACAAGGGGAATCTCTGAGTTCAAGAACAGCCAGGATTAGAGA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGACAAGGGGAATCTCTGAGTTCAAGAACAGCCAGGATTAGAGA  1094

seq1  TGGTGTCTCAAAACAAAAGCATGCAAAGCCTAAATTCAGAACCACTCCAA  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCAAAACAAAAGCATGCAAAGCCTAAATTCAGAACCACTCCAA  1144

seq1  ATCCAAGCAAGCCATTATTTAAAACAAATCACATATTTAGTGAATTC  1171
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCAAGCCATTATTTAAAACAAATCACATATTTAGTGAATTC  1191