BAC Information

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BAC

Clone NameB6Ng01-188L16
Chromosome8 (Build37)
Map Location 72,350,965 - 72,494,531
singlet/doubletdoublet
Overlap geneEdg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip
Downstream geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188L16.bB6Ng01-188L16.g
ACCGA012951GA012952
length841296
definitionB6Ng01-188L16.b B6Ng01-188L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,350,965 - 72,351,801)(72,494,236 - 72,494,531)
sequence
gaattcactgtgtaggtgaggatggccttgaactcttgatggtcctgact
cccaagtgctagtactgaagctgattccttagatgtgctgagcagcctga
gggctcacctgcctcccttagtacgagggaccccatgacacagagcaagc
ctttccactctgaggttgcagagttggggtttggtttggtttagttagga
tttttttctgttggttggcaggtgttttgccattacttcagtcagtctgt
cccagtgtcctggaatcatgactcagggctgccaagaatccttcaacatg
aaatcccatggccccagccagccttgaacttgctgcatagactaggctgt
tcttgaatccattgtcttgcctccgaattgtagatgttgggattagagct
atatgctgccatacccagtttttgtctcttcctggagtcttacaaatgtt
tctttccttttgcctctgtcctacccagctctctctttaaagaacctagg
atgatttctagtttgtgcaaaccttctccttctgcctgcctcaccccctt
tttttttagacccaaagtctcacagtgcagcccagtccaccctagagctc
actgtgccactcaggctaatatcaaactctcaggtctcttcctgcctggg
ctccctgagtgctaggaatgacaagccatattgagcctgtgtctgactgc
acagcttggaaaagcacagctatgcagggggcactcagaaaactccatga
ggaagggcttcagtgtcccttggactttctacttctgagtcccccaagac
ctcagatatgccaggcctgaggtttaactcccctccctcct
tgtaggtagcttcaggacggccctcattttgcccagctagggacctcttg
ctactcctgtgggctgtactgaatgaacttctgtcttcatcttcgaagaa
gtacttgtttcccagatgaaatccttagggatttttgttccatattctgt
tctactttcagttctgggttctttatatgaaagggttgatgtcacctatg
tcagggcctagaacatccgtctgggctggggggttgggagggaagaggag
ttcctagcaggttgaggtaggcattgtggggggaggtttgaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72350965_72351801
seq2: B6Ng01-188L16.b_47_886

seq1  GAATTCACTGTGTAGGTGAGGATGGCCTTGAACTCTTGATGGTCCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGGTGAGGATGGCCTTGAACTCTTGATGGTCCTGACT  50

seq1  CCCAAGTGCTAGTACTGAAGCTGATTCCTTAGATGTGCTGAGCAGCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTAGTACTGAAGCTGATTCCTTAGATGTGCTGAGCAGCCTGA  100

seq1  GGGCTCACCTGCCTCCCTTAGTACGAGGGACCCCATGACACAGAGCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACCTGCCTCCCTTAGTACGAGGGACCCCATGACACAGAGCAAGC  150

seq1  CTTTCCACTCTGAGGTTGCAGAGTTGGGGTTTGGTTTGGTTTAGTTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACTCTGAGGTTGCAGAGTTGGGGTTTGGTTTGGTTTAGTTAGGA  200

seq1  TTTTTTTCTGTTGGTTGGCAGGTGTTTTGCCATTACTTCAGTCAGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGTTGGTTGGCAGGTGTTTTGCCATTACTTCAGTCAGTCTGT  250

seq1  CCCAGTGTCCTGGAATCATGACTCAGGGCTGCCAAGAATCCTTCAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTCCTGGAATCATGACTCAGGGCTGCCAAGAATCCTTCAACATG  300

seq1  AAATCCCATGGCCCCAGCCAGCCTTGAACTTGCTGCATAGACTAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCATGGCCCCAGCCAGCCTTGAACTTGCTGCATAGACTAGGCTGT  350

seq1  TCTTGAATCCATTGTCTTGCCTCCGAATTGTAGATGTTGGGATTAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATCCATTGTCTTGCCTCCGAATTGTAGATGTTGGGATTAGAGCT  400

seq1  ATATGCTGCCATACCCAGTTTTTGTCTCTTCCTGGAGTCTTACAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGCCATACCCAGTTTTTGTCTCTTCCTGGAGTCTTACAAATGTT  450

seq1  TCTTTCCTTTTGCCTCTGTCCTACCCAGCTCTCTCTTTAAAGAACCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTTGCCTCTGTCCTACCCAGCTCTCTCTTTAAAGAACCTAGG  500

seq1  ATGATTTCTAGTTTGTGCAAACCTTCTCCTTCTGCCTGCCTCACCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTAGTTTGTGCAAACCTTCTCCTTCTGCCTGCCTCACCCCCTT  550

seq1  TTTTTTTAGACCCAAAGTCTCACAGTGCAGCCCAGTCCACCCTAGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGACCCAAAGTCTCACAGTGCAGCCCAGTCCACCCTAGAGCTC  600

seq1  ACTGTGCCACTCAGGCTAATATCAAACTCTCAGGTCTCTTCCTGCCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCACTCAGGCTAATATCAAACTCTCAGGTCTCTTCCTGCCTGGG  650

seq1  CTCCCTGAGTGCTAGGAATGACAAGCCATATTGAGCCTGTGTCTGACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAGTGCTAGGAATGACAAGCCATATTGAGCCTGTGTCTGACTGC  700

seq1  ACAGCTTGGAAAAGCACAGCTATGCAGGGGGCAC-CAGAAAACTCCATGA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGCTTGGAAAAGCACAGCTATGCAGGGGGCACTCAGAAAACTCCATGA  750

seq1  GGAAGGGCTTCAGTGTCCCTTGGACTTTCTACTTCTGAGTCCCCCAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTTCAGTGTCCCTTGGACTTTCTACTTCTGAGTCCCCCAAGAC  800

seq1  CTCAGATATGCCAGGCCTGAGG-TTAACT-CCCTCCCTCC  837
      |||||||||||||||||||||| |||||| ||||||||||
seq2  CTCAGATATGCCAGGCCTGAGGTTTAACTCCCCTCCCTCC  840

seq1: chr8_72494236_72494531
seq2: B6Ng01-188L16.g_71_366 (reverse)

seq1  CAACCTCAAACCTCCCCCCACAATGCCTACCTCAACCTGCTAGGAACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAAACCTCCCCCCACAATGCCTACCTCAACCTGCTAGGAACTCC  50

seq1  TCTTCCCTCCCAACCCCCCAGCCCAGACGGATGTTCTAGGCCCTGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCCAACCCCCCAGCCCAGACGGATGTTCTAGGCCCTGACATA  100

seq1  GGTGACATCAACCCTTTCATATAAAGAACCCAGAACTGAAAGTAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATCAACCCTTTCATATAAAGAACCCAGAACTGAAAGTAGAACAG  150

seq1  AATATGGAACAAAAATCCCTAAGGATTTCATCTGGGAAACAAGTACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAACAAAAATCCCTAAGGATTTCATCTGGGAAACAAGTACTTCT  200

seq1  TCGAAGATGAAGACAGAAGTTCATTCAGTACAGCCCACAGGAGTAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGATGAAGACAGAAGTTCATTCAGTACAGCCCACAGGAGTAGCAAG  250

seq1  AGGTCCCTAGCTGGGCAAAATGAGGGCCGTCCTGAAGCTACCTACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTAGCTGGGCAAAATGAGGGCCGTCCTGAAGCTACCTACA  296