BAC Information

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BAC

Clone NameB6Ng01-189H17
Chromosome8 (Build37)
Map Location 122,856,982 - 122,935,401
singlet/doubletdoublet
Overlap genenone
Upstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H17.bB6Ng01-189H17.g
ACCGA013493GA013494
length7541,080
definitionB6Ng01-189H17.b B6Ng01-189H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,856,982 - 122,857,734)(122,934,358 - 122,935,401)
sequence
gaattctgtctgagccacgcccccaggcccttaactggaggattctagga
aggaactctaccagtgaagccgactccactcttttttttttttttttttt
ttttttctgggatagggtcttgttaaatttctcaggctggccttgaactt
gtgcctgcctcagtcccttagagtagctgcattgacaagcctgcgctact
ctgctggaccagggagcaccagacactggttcccctggcagatctgcttt
tgccttcagccttcttttctgtccaggtcctcaagggattgtgatcatgg
atgtctttttatttggtgagaaacagggtgagacgatttctgctggcacg
cacttagcctgccgtggctctccaccagaaatcgaatactatgatccatt
ttggggggggggggcagtatttttaagtccactttaaaaaaaatcgtatt
aatttttacaggagtagaaagatgggctgcctgttctacataacatcttt
tattcaaaaaatgctgtcctagaaatcaagactgtcccagcttatgtggc
aaatggctgccattggcctatcattcctactggggagaggcaggaacctc
cagcaagtgatctagcatctctgttttcttggtcgccctgtgcatgcaat
ggaggtcacttctagaaactgaataagggcgtggcacccatatactgtgg
gggggtcagttatctgaagctgattttgctgtgcatcttgtcttcagcct
ccta
gaattcaaggtcttctttggctacacagcagtataaggcctgcctgggcc
acaggagaccctgtttaacaccaacaaaataaaacaataaagcaaagaaa
gccccctgagggatatcagtctacttacagcgccacgggggcgtccacag
ccgccgtgggctgccgcctacgaagtggcagtgacccagccacagtgtga
cagcggaatgttcagacattgccaactgtccccttgagcaagccggatca
tctctcccggagaggataaaaaagctcctctgagaaaccatcacaaagac
gcagcaccgactgcacacagactatgctctgtgcgggtgcagcctgcaga
ggccagagggatggagggctcctaggaagacaggcttcagccgggcagag
cataagatggggcatgactgggggatgagggggttccatgagggacatac
gtgccccatgaggaagatcgcaacccacccagagctacacagcagcacag
gctggatgtgggaccggaagagcagtggtcagagctggatactcctaggg
tgctgttctaggagtcagttatgaacagcagactgtgctttaaggagagc
cgggagctgcgccctaatagatgctccatcgactgcctgtgccccacttc
tctgtcccctactcagggccttgataggcctcatggccatttcctgattg
cttatttaacatgccagggagcttacaggcctgatgtgatatagggggga
aaaaagccacaccagagacctttgacccctgcagccaaggagtttatagc
atgtttcttggtaatatcaacccagggccctcttagagtacatgacgggc
cagtaaagggtccctgtggctgttcaacaaaagggactttgggtttctat
ttgctagcccacctctagcctctgacagacacgcatggagtcttcttgga
aggccaaaggggatgctttcccccagaccagcctaagaacattagactag
aagaaacccttgcctggggtaggcaggaggagtcttgggccagtgaccaa
ggggggtccccttggtggctccttgggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_122856982_122857734
seq2: B6Ng01-189H17.b_45_798

seq1  GAATTCTGTCTGAGCCACGCCCCCAGGCCCTTAACTGGAGGATTCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGAGCCACGCCCCCAGGCCCTTAACTGGAGGATTCTAGGA  50

seq1  AGGAACTCTACCAGTGAAGCCGACTCCACTCTTTTTTTTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCTACCAGTGAAGCCGACTCCACTCTTTTTTTTTTTTTTTTTTT  100

seq1  TTTTTTCTGGGATAGGGTCTTGTTAAATTTCTCAGGCTGGCCTTGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGGGATAGGGTCTTGTTAAATTTCTCAGGCTGGCCTTGAACTT  150

seq1  GTGCCTGCCTCAGTCCCTTAGAGTAGCTGCATTGACAAGCCTGCGCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCTCAGTCCCTTAGAGTAGCTGCATTGACAAGCCTGCGCTACT  200

seq1  CTGCTGGACCAGGGAGCACCAGACACTGGTTCCCCTGGCAGATCTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACCAGGGAGCACCAGACACTGGTTCCCCTGGCAGATCTGCTTT  250

seq1  TGCCTTCAGCCTTCTTTTCTGTCCAGGTCCTCAAGGGATTGTGATCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGCCTTCTTTTCTGTCCAGGTCCTCAAGGGATTGTGATCATGG  300

seq1  ATGTCTTTTTATTTGGTGAGAAACAGGGTGAGACGATTTCTGCTGGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTTATTTGGTGAGAAACAGGGTGAGACGATTTCTGCTGGCACG  350

seq1  CACTTAGCCTGCCGTGGCTCTCCACCAGAAATCGAATACTATGATCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCCTGCCGTGGCTCTCCACCAGAAATCGAATACTATGATCCATT  400

seq1  TTGGGGGGGGGGGGCAGTATTTTTAAGTCCACTTTAAAAAAAATCGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGGGGGGGCAGTATTTTTAAGTCCACTTTAAAAAAAATCGTATT  450

seq1  AATTTTTACAGGAGTAGAAAGATGGGCTGCCTGTTCTACATAACATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTACAGGAGTAGAAAGATGGGCTGCCTGTTCTACATAACATCTTT  500

seq1  TATTCAAAAAATGCTGTCCTAGAAATCAAGACTGTCCCAGCTTATGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAAATGCTGTCCTAGAAATCAAGACTGTCCCAGCTTATGTGGC  550

seq1  AAATGGCTGCCATTGGCCTATCATTCCTACTGGGGAGAGGCAGGAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGCCATTGGCCTATCATTCCTACTGGGGAGAGGCAGGAACCTC  600

seq1  CAGCAAGTGATCTAGCATCTCTG-TTTCTTGGTCGCCCTGTGCATGCAAT  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGCAAGTGATCTAGCATCTCTGTTTTCTTGGTCGCCCTGTGCATGCAAT  650

seq1  GGAGGTCACTTCTAG-AACTGAATAAGGGCGTGGCACCCAGATACTGTGG  698
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GGAGGTCACTTCTAGAAACTGAATAAGGGCGTGGCACCCATATACTGTGG  700

seq1  GGGGTCCAGTCATCTGAAGCTGATCTTGCCTGGCCATCTTGCCTCCAGCC  748
      ||||  |||| ||||||||||||| ||| |||  ||||||| || |||||
seq2  GGGGGTCAGTTATCTGAAGCTGATTTTG-CTGTGCATCTTGTCTTCAGCC  749

seq1  TCCTA  753
      |||||
seq2  TCCTA  754

seq1: chr8_122934358_122935401
seq2: B6Ng01-189H17.g_64_1143 (reverse)

seq1  TTACC--AGGAGCCAC--AAGGGACCCCC--TGGTCACT-GCCCA--GCT  41
      |||||  |||||||||  | |||||||||  |||||||| |||||   ||
seq2  TTACCCAAGGAGCCACCAAGGGGACCCCCCTTGGTCACTGGCCCAAGACT  50

seq1  -CTCCTGCCTA-CCCAG--CAGGGTT--CTCTAGTCT-ATG-TCT--AGC  81
       |||||||||| |||||   ||||||   |||||||| ||| |||   ||
seq2  CCTCCTGCCTACCCCAGGCAAGGGTTTCTTCTAGTCTAATGTTCTTAGGC  100

seq1  T-GTCTGGGGG-AAGCATCCCCTT--GGCTTCC-AGAAGACT-CATGCGT  125
      | ||||||||| ||||||||||||  | ||||| |||||||| |||||||
seq2  TGGTCTGGGGGAAAGCATCCCCTTTGGCCTTCCAAGAAGACTCCATGCGT  150

seq1  GTCTGTCAGA-GCTAGAGGTGGGCTAGC-AATAGAAACCC-AAGTCCC-T  171
      |||||||||| ||||||||||||||||| ||||||||||| ||||||| |
seq2  GTCTGTCAGAGGCTAGAGGTGGGCTAGCAAATAGAAACCCAAAGTCCCTT  200

seq1  TTGT--GACAGCCACA-GGACCC-TTACTGG-CCGTCATGTACTCTAAGA  216
      ||||   ||||||||| |||||| ||||||| ||||||||||||||||||
seq2  TTGTTGAACAGCCACAGGGACCCTTTACTGGCCCGTCATGTACTCTAAGA  250

seq1  GGGCCCTGGGTTGATATTACCAAG-AACATGCTAT-AACTCCTTGGCTGC  264
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GGGCCCTGGGTTGATATTACCAAGAAACATGCTATAAACTCCTTGGCTGC  300

seq1  AGGGGTCAAAGGTCTCTGGTGTGGCTTTTTTCCCCCCTATATCACATCAG  314
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAAAGGTCTCTGGTGTGGCTTTTTTCCCCCCTATATCACATCAG  350

seq1  GCCTGTAAGCTCCCTGGCATGTTAAATAAGCAATCAGGAAATGGCCATGA  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAGCTCCCTGGCATGTTAAATAAGCAATCAGGAAATGGCCATGA  400

seq1  GGCCTATCAAGGCCCTGAGTAGGGGACAGAGAAGTGGGGCACAGGCAGTC  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATCAAGGCCCTGAGTAGGGGACAGAGAAGTGGGGCACAGGCAGTC  450

seq1  GATGGAGCATCTATTAGGGCGCAGCTCCCGGCTCTCCTTAAAGCACAGTC  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCATCTATTAGGGCGCAGCTCCCGGCTCTCCTTAAAGCACAGTC  500

seq1  TGCTGTTCATAACTGACTCCTAGAACAGCACCCTAGGAGTATCCAGCTCT  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCATAACTGACTCCTAGAACAGCACCCTAGGAGTATCCAGCTCT  550

seq1  GACCACTGCTCTTCCGGTCCCACATCCAGCCTGTGCTGCTGTGTAGCTCT  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGCTCTTCCGGTCCCACATCCAGCCTGTGCTGCTGTGTAGCTCT  600

seq1  GGGTGGGTTGCGATCTTCCTCATGGGGCACGTATGTCCCTCATGGAACCC  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTTGCGATCTTCCTCATGGGGCACGTATGTCCCTCATGGAACCC  650

seq1  CCTCATCCCCCAGTCATGCCCCATCTTATGCTCTGCCCGGCTGAAGCCTG  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCCCCAGTCATGCCCCATCTTATGCTCTGCCCGGCTGAAGCCTG  700

seq1  TCTTCCTAGGAGCCCTCCATCCCTCTGGCCTCTGCAGGCTGCACCCGCAC  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAGGAGCCCTCCATCCCTCTGGCCTCTGCAGGCTGCACCCGCAC  750

seq1  AGAGCATAGTCTGTGTGCAGTCGGTGCTGCGTCTTTGTGATGGTTTCTCA  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGTCTGTGTGCAGTCGGTGCTGCGTCTTTGTGATGGTTTCTCA  800

seq1  GAGGAGCTTTTTTATCCTCTCCGGGAGAGATGATCCGGCTTGCTCAAGGG  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTTTTTTATCCTCTCCGGGAGAGATGATCCGGCTTGCTCAAGGG  850

seq1  GACAGTTGGCAATGTCTGAACATTCCGCTGTCACACTGTGGCTGGGTCAC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGGCAATGTCTGAACATTCCGCTGTCACACTGTGGCTGGGTCAC  900

seq1  TGCCACTTCGTAGGCGGCAGCCCACGGCGGCTGTGGACGCCCCCGTGGCG  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTCGTAGGCGGCAGCCCACGGCGGCTGTGGACGCCCCCGTGGCG  950

seq1  CTGTAAGTAGACTGATATCCCTCAGGGGGCTTTCTTTGCTTTATTGTTTT  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTAGACTGATATCCCTCAGGGGGCTTTCTTTGCTTTATTGTTTT  1000

seq1  ATTTTGTTGGTGTTAAACAGGGTCTCCTGTGGCCCAGGCAGGCCTTATAC  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGGTGTTAAACAGGGTCTCCTGTGGCCCAGGCAGGCCTTATAC  1050

seq1  TGCTGTGTAGCCAAAGAAGACCTTGAATTC  1044
      ||||||||||||||||||||||||||||||
seq2  TGCTGTGTAGCCAAAGAAGACCTTGAATTC  1080