BAC Information

Click to search

BAC

Clone NameB6Ng01-189L07
Chromosome8 (Build37)
Map Location 102,567,530 - 102,713,036
singlet/doubletdoublet
Overlap geneLOC436054, LOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189L07.bB6Ng01-189L07.g
ACCGA013654GA013655
length1,1541,153
definitionB6Ng01-189L07.b B6Ng01-189L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,567,530 - 102,568,695)(102,711,886 - 102,713,036)
sequence
gaattccaaaagattctgcatatgaagttgaacaaaagaaacaagcagat
atcaaatggccacatgtaaaaatgtctctggcactctgtttgcaattaaa
atactgctaaatatacccagcacacgtctgcatgcaattaaaaaaggaaa
agtaattggtagaatttatttcctataaataggtattcatttagtgtttt
aattcctaagagcttacaattatagttcatctctaaaggaagtcccagtt
tatataggttgtcacagttcataacatatgccctttaattaaatgtatta
gtactttataaaaaaaaagaattcaaatatgaaagtaatccattttatga
tccatttcttttaattgtgcattttagctttcttttaaaatgcaggtata
actatacacatatattttggtatcagtatggaattttcattttgaccaag
agctaagctttattatgtttattaaaatagtcctttgtttgtaaggccag
agcaaaatgaacaaaatactgagtggtggcgatgggcatataaaagaaaa
tatctggcacaatctatcagttaaacaatttattattttataatgaaaag
acgctatcactaataggtcaaacaagtctttcagactcacagtgttctct
cttttgtcatggtaaatacagtgttgttatcacagacaggatgacagctt
caggcaagagatacaactccagggactagaactttaatttaaaaagccat
gaggaaaaggcacaggaggaaatcagagaggacaggtctagagacaaaac
gatgcatttcataatctaaaaccctgccagactgcaagccaacctcagaa
gctggacttttaccatcaaaattagaggaagtgggatcacaaagaaacag
aagattctttgggtgagaagggagaaatgagcattcaacaacatttaaat
tgttaccccaaacaagactgaggaaggcaggaaagatattaggggacaaa
ggaagagaaagagcccctgcctctgatgtcttctcacagattaaactaaa
gaattccagcacattcaaaaaattcctgtagacactatgaggaacaatat
ttctttttatagggatttgaatgaagtgcctactaccatgagacatgaat
acag

gaattcagggtattccataaacattttctcaagaactcaagttggttctt
ttagaagggagggaatcctcagagcatcattagaagatcctgttctcaaa
aagacatagttttcaatacaataaatgtattataatcttcacacctcaca
ccccatagttttgtttgcaatgctcagatatcacaaaaagtaaaattata
aatatacaggcaatggagagggtattgtgctgtataacaagttctgtttt
tagtatttagaaaatagtgttttctgggtgtgtattccttgcacccattg
actctcaaaacccttacacaatagttctacttaacagctgtggcttcttt
tattgagcagtattacatctacatcgcaataatattaacaaccttttaaa
catgcttctgtgatgagcattaaagactgggagatttcagtagatcttga
ctctaaggagattattggaaaatacatgagtttgtttccataaatatgat
agagtttcttaataaataatttatgggagagatgattacaaagcttaata
cagcattcacttgcctgtagaaattactaagcgtaatccagacatgatgc
ttaaagagaaaagatatgtaaccaggttttacttattccacagggcacag
cacagaacattgtggtatttcagctacaagtctggatgctgtgaatgtac
agaaaaataacatttggcatttacttgggagaggtcctgctgaaataatg
catttccaagacaatgcctttcactttcaaatttgaatgtaaattgtaaa
gtgtgtatatatttttatactactgccagagaaccacaattgtccctgtt
gcgattttctaaggaaatctggtatctgcccctgaagagagaagcattgt
aaaactgtcagacaggaagcccttcccctgagaactagacatctacagtt
atggtccagcagctgttgcaaggaatctcccagctgtaatgtttacagtg
ccccattttaggtattgtggagtgacaggcagcctgcgatttagtgcaat
catcattgagatacgcttagctgattgatttaatttgcttgttttgtcat
aggcagaatcagttgtaagtgtactcatcttcaagaggtagtctcctcta
agc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102567530_102568695
seq2: B6Ng01-189L07.b_47_1200

seq1  GAATTCCAAAAGATTCTGCATATGAAGTTGAACAAAAGAAACAAGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGATTCTGCATATGAAGTTGAACAAAAGAAACAAGCAGAT  50

seq1  ATCAAATGGCCACATGTAAAAATGTCTCTGGCACTCTGTTTGCAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGGCCACATGTAAAAATGTCTCTGGCACTCTGTTTGCAATTAAA  100

seq1  ATACTGCTAAATATACCCAGCACACGTCTGCATGCAATTAAAAAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTAAATATACCCAGCACACGTCTGCATGCAATTAAAAAAGGAAA  150

seq1  AGTAATTGGTAGAATTTATTTCCTATAAATAGGTATTCATTTAGTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGGTAGAATTTATTTCCTATAAATAGGTATTCATTTAGTGTTTT  200

seq1  AATTCCTAAGAGCTTACAATTATAGTTCATCTCTAAAGGAAGTCCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAAGAGCTTACAATTATAGTTCATCTCTAAAGGAAGTCCCAGTT  250

seq1  TATATAGGTTGTCACAGTTCATAACATATGCCCTTTAATTAAATGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGTTGTCACAGTTCATAACATATGCCCTTTAATTAAATGTATTA  300

seq1  GTACTTTATAAAAAAAAAGAATTCAAATATGAAAGTAATCCATTTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTATAAAAAAAAAGAATTCAAATATGAAAGTAATCCATTTTATGA  350

seq1  TCCATTTCTTTTAATTGTGCATTTTAGCTTTCTTTTAAAATGCAGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTTTTAATTGTGCATTTTAGCTTTCTTTTAAAATGCAGGTATA  400

seq1  ACTATACACATATATTTTGGTATCAGTATGGAATTTTCATTTTGACCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACACATATATTTTGGTATCAGTATGGAATTTTCATTTTGACCAAG  450

seq1  AGCTAAGCTTTATTATGTTTATTAAAATAGTCCTTTGTTTGTAAGGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGCTTTATTATGTTTATTAAAATAGTCCTTTGTTTGTAAGGCCAG  500

seq1  AGCAAAATGAACAAAATACTGAGTGGTGGCGATGGGCATATAAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGAACAAAATACTGAGTGGTGGCGATGGGCATATAAAAGAAAA  550

seq1  TATCTGGCACAATCTATCAGTTAAACAATTTATTATTTTATAATGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCACAATCTATCAGTTAAACAATTTATTATTTTATAATGAAAAG  600

seq1  ACGCTATCACTAATAGGTCAAACAAGTCTTTCAGACTCACAGTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTATCACTAATAGGTCAAACAAGTCTTTCAGACTCACAGTGTTCTCT  650

seq1  CTTTTGTCATGGTAAATACAGTGTTGTTATCACAGACAGGATGACAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCATGGTAAATACAGTGTTGTTATCACAGACAGGATGACAGCTT  700

seq1  CAGGCAAGAGATACAACTCCAGGGACTAGAACTTTAATTTAAAAAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGAGATACAACTCCAGGGACTAGAACTTTAATTTAAAAAGCCAT  750

seq1  GAGGAAAAGGCACAGGAGGAAATCAGAGAGGACAGGTCTAGAGACAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGGCACAGGAGGAAATCAGAGAGGACAGGTCTAGAGACAAAAC  800

seq1  GATGCATTTCATAATCTAAAACCCTGCCAGACTGCAAGCCAACCTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTCATAATCTAAAACCCTGCCAGACTGCAAGCCAACCTCAGAA  850

seq1  GCTGGACTTTTACCATCAAAATTAGAGGAAGTGGGATCACAAAGAAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTTTTACCATCAAAATTAGAGGAAGTGGGATCACAAAGAAACAG  900

seq1  AAGATTCTTT-GGTGAGAAGGGAGAAATGAGCATTCAACAACA-TTAAAA  948
      |||||||||| |||||||||||||||||||||||||||||||| ||||| 
seq2  AAGATTCTTTGGGTGAGAAGGGAGAAATGAGCATTCAACAACATTTAAAT  950

seq1  TGTTACCCCAAACAAGACTGAGGAAGGCAGGAAAGATATTAAGGGGACAA  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTACCCCAAACAAGACTGAGGAAGGCAGGAAAGATATT-AGGGGACAA  999

seq1  AGGAAGAGAAAGAAGCCCCTGCCTCTGATGTC-TCTCACCAGATTAAACT  1047
      |||||||||||| ||||||||||||||||||| ||||| |||||||||||
seq2  AGGAAGAGAAAG-AGCCCCTGCCTCTGATGTCTTCTCA-CAGATTAAACT  1047

seq1  AAAGAATTCCAGCACAATTCAAAAAATTCCCTGTAAAGACCACCTATGAG  1097
      ||||||||||||||| |||||||||||| |||||| | |    |||||| 
seq2  AAAGAATTCCAGCAC-ATTCAAAAAATT-CCTGTAGACA----CTATGA-  1090

seq1  GGAACAATATTTCTTTTATAAGGGGATTTGAAATGAAGGTGCTAAACTAC  1147
      ||||||||||||||||| ||  |||||||| |||||||   ||  |||| 
seq2  GGAACAATATTTCTTTT-TATAGGGATTTG-AATGAAGTGCCT--ACTA-  1135

seq1  CCATGAGACATGATTACAG  1166
      ||||||||||||| |||||
seq2  CCATGAGACATGAATACAG  1154


seq1: chr8_102711886_102713036
seq2: B6Ng01-189L07.g_68_1220 (reverse)

seq1  GCTTAGAGGAGACTACCTCT--GAGATGAGTACACTTTACAACTTGATCT  48
      ||||||||||||||||||||   |||||||||||| ||||||||   |||
seq2  GCTTAGAGGAGACTACCTCTTGAAGATGAGTACAC-TTACAACTGATTCT  49

seq1  GCTTATGACAAAAC-AGC-AATTTAATCAATTCAGCTAAGCGTTATCTTC  96
      || ||||||||||| ||| |||| |||||| ||||||||||| |||||  
seq2  GCCTATGACAAAACAAGCAAATTAAATCAA-TCAGCTAAGCG-TATCT--  95

seq1  AAAATGATGATGGCACTAAATCCGCAGGCTGCCTGTCACT-CACAATACC  145
        ||||||||| ||||||||| |||||||||||||||||| |||||||||
seq2  -CAATGATGATTGCACTAAAT-CGCAGGCTGCCTGTCACTCCACAATACC  143

seq1  TAAAATGGGGCACTGTAAACATTACAGCTGGGAGATTCC-TGCAACAGCT  194
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAATGGGGCACTGTAAACATTACAGCTGGGAGATTCCTTGCAACAGCT  193

seq1  GCTGGACCAT-ACTGTAGATGTCTAGTTCTCAGGGGAA-GGCTTCCTGTC  242
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  GCTGGACCATAACTGTAGATGTCTAGTTCTCAGGGGAAGGGCTTCCTGTC  243

seq1  TGACAGTTTTACAATGCTTCTCTCTTCAGGGGCAGATACCAGATTTCCTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTTACAATGCTTCTCTCTTCAGGGGCAGATACCAGATTTCCTT  293

seq1  AGAAAATCGCAACAGGGACAATTGTGGTTCTCTGGCAGTAGTAT-AAAAT  341
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAAATCGCAACAGGGACAATTGTGGTTCTCTGGCAGTAGTATAAAAAT  343

seq1  ATATACACACTTTACAATTTACATTCAAATTTGAAAGTGAAAGGCATTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACTTTACAATTTACATTCAAATTTGAAAGTGAAAGGCATTGT  393

seq1  CTTGGAAATGCATTATTTCAGCAGGACCTCTCCCAAGTAAATGCCAAATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATGCATTATTTCAGCAGGACCTCTCCCAAGTAAATGCCAAATG  443

seq1  TTATTTTTCTGTACATTCACAGCATCCAGACTTGTAGCTGAAATACCACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTGTACATTCACAGCATCCAGACTTGTAGCTGAAATACCACA  493

seq1  ATGTTCTGTGCTGTGCCCTGTGGAATAAGTAAAACCTGGTTACATATCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTGCTGTGCCCTGTGGAATAAGTAAAACCTGGTTACATATCTT  543

seq1  TTCTCTTTAAGCATCATGTCTGGATTACGCTTAGTAATTTCTACAGGCAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAAGCATCATGTCTGGATTACGCTTAGTAATTTCTACAGGCAA  593

seq1  GTGAATGCTGTATTAAGCTTTGTAATCATCTCTCCCATAAATTATTTATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCTGTATTAAGCTTTGTAATCATCTCTCCCATAAATTATTTATT  643

seq1  AAGAAACTCTATCATATTTATGGAAACAAACTCATGTATTTTCCAATAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCTATCATATTTATGGAAACAAACTCATGTATTTTCCAATAAT  693

seq1  CTCCTTAGAGTCAAGATCTACTGAAATCTCCCAGTCTTTAATGCTCATCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGAGTCAAGATCTACTGAAATCTCCCAGTCTTTAATGCTCATCA  743

seq1  CAGAAGCATGTTTAAAAGGTTGTTAATATTATTGCGATGTAGATGTAATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATGTTTAAAAGGTTGTTAATATTATTGCGATGTAGATGTAATA  793

seq1  CTGCTCAATAAAAGAAGCCACAGCTGTTAAGTAGAACTATTGTGTAAGGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAATAAAAGAAGCCACAGCTGTTAAGTAGAACTATTGTGTAAGGG  843

seq1  TTTTGAGAGTCAATGGGTGCAAGGAATACACACCCAGAAAACACTATTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAGTCAATGGGTGCAAGGAATACACACCCAGAAAACACTATTTT  893

seq1  CTAAATACTAAAAACAGAACTTGTTATACAGCACAATACCCTCTCCATTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACTAAAAACAGAACTTGTTATACAGCACAATACCCTCTCCATTG  943

seq1  CCTGTATATTTATAATTTTACTTTTTGTGATATCTGAGCATTGCAAACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATATTTATAATTTTACTTTTTGTGATATCTGAGCATTGCAAACAA  993

seq1  AACTATGGGGTGTGAGGTGTGAAGATTATAATACATTTATTGTATTGAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGGGTGTGAGGTGTGAAGATTATAATACATTTATTGTATTGAAA  1043

seq1  ACTATGTCTTTTTGAGAACAGGATCTTCTAATGATGCTCTGAGGATTCCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTTTTTGAGAACAGGATCTTCTAATGATGCTCTGAGGATTCCC  1093

seq1  TCCCTTCTAAAAGAACCAACTTGAGTTCTTGAGAAAATGTTTATGGAATA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTAAAAGAACCAACTTGAGTTCTTGAGAAAATGTTTATGGAATA  1143

seq1  CCCTGAATTC  1151
      ||||||||||
seq2  CCCTGAATTC  1153


| Home | SequenceCutter | Blast | Download |