BAC Information

Click to search

BAC

Clone NameB6Ng01-191P09
Chromosome8 (Build37)
Map Location 99,892,462 - 100,032,907
singlet/doubletdoublet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191P09.bB6Ng01-191P09.g
ACCGA015326GA015327
length1,168716
definitionB6Ng01-191P09.b B6Ng01-191P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,031,736 - 100,032,907)(99,892,462 - 99,893,177)
sequence
gaattctttgtttagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatatattggatattagtc
ccctatctgatttaagataggtaaagatcctttcccaatctgttggtggt
ctttttatttttgtaccgtcttaagcatagcaattagtccttgatattca
ttgggttaccttatatccatccacctactttcagcatctgtggaattcct
tttcaattcatacaattctataaggagttctcacaaaactaaagcttttt
agatccaagtataaaaccattagaatctactcattagcatgcttggctta
acacagaaatcttgactttccaaacagcaagtctttcatgattctcctgt
attttatttttaatttgggctctagacaattataagcaaaatgagatact
gttttctaaacacttgtgtgcaggattcctagattgttagaatgggtctg
cagaaggacttgacattcatatagaaggggaaagaaaagttagaaaccat
gattttcttgagtaaggaatagagactagaaccttgccaggtaggggaga
ctcataaccttgtttgagtggggctgttgtctctttcaagaaagaaaaag
aatattagctttctgtaaaaagtactaatttaaaatttgaatagtcagta
caatattggtaagaataaaattttatagcatgccttttcccatctttaaa
acaaaaaggggaaaacataatactatttaagatggatattttcaattcat
gttatttataaggtaaaaattaagcatattactttaggaatgtgatgagg
gagaccagaaattgatagagccagactggattgtgtgttggctgtcttcg
aaccatttgaaaagctttactcattataggcatgatgaatggctttgcat
aggcggccaaagctggagatctttcttcatgataaaaagctggaagaaag
aacatcatccacaataggctagaaaacactatttattaattataattaat
gttccctcattcatacattcggtttactgatggagttatacatgtgcagt
tactattgacaggtaggtgttaaccaacaacctgtttccgtgtattaaag
agagtactgatcttagct

gaattcaaaaacttttaaaaatgtaattgtagtagtcctgctgatagaca
atatgacagatcatttggctcagggatttttgtgtgtttttttttcccct
ggagttttgtttatactcagacttttgtggtagctgaaggctatctccta
gccagtttgatgggagatgggttttggcagagcccacatgaaatgataac
ttctagttctcatatttttccaactctgctttgtggatctgccataataa
tatcaaatactataaaattggaaaccaaagcttttggcactaggtatatc
taaatgtcaattatgtctctatctaattaacttttctcaacctcagaatt
cctgggtatcctgaaatttcagttatggctttactacaacctcaaatcaa
tataataaaaaatatgcatactgcaatcaatgtctaggggtttatagtcc
tcaacattggttgaattttacattagaagttgttggtcaatcaggtatat
tttatgacactatttttgcctcacattattttaaaagcttttagtatcaa
agtactgcttggaaaaatactgaagattaataaatatgttttgatgctac
agtcccaagtataaaaatgataaatgaagattttatgccccagtacaggg
gaatgccagggccaggaaacaggagtggctgggttgtgaagcagggatgg
ggtaagagggagggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100031736_100032907
seq2: B6Ng01-191P09.b_48_1215 (reverse)

seq1  AGCTAAGATCAGTGACTCT-TTTAATACA--GGAACAGTTTGGTTTGTGT  47
      ||||||||||||| ||||| |||||||||  | ||||| |||  ||| ||
seq2  AGCTAAGATCAGT-ACTCTCTTTAATACACGGAAACAGGTTG--TTG-GT  46

seq1  TTACA-CTACCTGTC-ATAGTACTTGGCACATTGTATAAACTCATCAAGT  95
      | ||| ||||||||| ||||||  | ||||| |||||||   |||||   
seq2  TAACACCTACCTGTCAATAGTAACT-GCACA-TGTATAACTCCATCAGTA  94

seq1  AACCGAATGTATGAATGAGGGAACATTTAATTATTAATTAATAAATAGTT  145
      ||||||||||||||||||||||||| ||||||| |||||||||||||| |
seq2  AACCGAATGTATGAATGAGGGAACA-TTAATTA-TAATTAATAAATAG-T  141

seq1  GTTTTCTAGGCCTTATTGTGGATGATGTTCTTTCT--CAGCTTTTATCCA  193
      |||||||||  | ||||||||||||||||||||||  ||||||||   ||
seq2  GTTTTCTAG--CCTATTGTGGATGATGTTCTTTCTTCCAGCTTTTTATCA  189

seq1  TGAAGAAAGATCTCCAGCTTTGGCCGCCTATGCAAAGCCATTCATCATGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGATCTCCAGCTTTGGCCGCCTATGCAAAGCCATTCATCATGC  239

seq1  CTATAATGAGTAAAGCTTTTCAAATGGTTCGAAGACAGCCAACACACAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGAGTAAAGCTTTTCAAATGGTTCGAAGACAGCCAACACACAAT  289

seq1  CCAGTCTGGCTCTATCAATTTCTGGTCTCCCTCATCACATTCCTAAAGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGGCTCTATCAATTTCTGGTCTCCCTCATCACATTCCTAAAGTA  339

seq1  ATATGCTTAATTTTTACCTTATAAATAACATGAATTGAAAATATCCATCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTAATTTTTACCTTATAAATAACATGAATTGAAAATATCCATCT  389

seq1  TAAATAGTATTATGTTTTCCCCTTTTTGTTTTAAAGATGGGAAAAGGCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTATTATGTTTTCCCCTTTTTGTTTTAAAGATGGGAAAAGGCAT  439

seq1  GCTATAAAATTTTATTCTTACCAATATTGTACTGACTATTCAAATTTTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAAATTTTATTCTTACCAATATTGTACTGACTATTCAAATTTTAA  489

seq1  ATTAGTACTTTTTACAGAAAGCTAATATTCTTTTTCTTTCTTGAAAGAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTACTTTTTACAGAAAGCTAATATTCTTTTTCTTTCTTGAAAGAGA  539

seq1  CAACAGCCCCACTCAAACAAGGTTATGAGTCTCCCCTACCTGGCAAGGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCCCACTCAAACAAGGTTATGAGTCTCCCCTACCTGGCAAGGTT  589

seq1  CTAGTCTCTATTCCTTACTCAAGAAAATCATGGTTTCTAACTTTTCTTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTATTCCTTACTCAAGAAAATCATGGTTTCTAACTTTTCTTTC  639

seq1  CCCTTCTATATGAATGTCAAGTCCTTCTGCAGACCCATTCTAACAATCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATATGAATGTCAAGTCCTTCTGCAGACCCATTCTAACAATCTA  689

seq1  GGAATCCTGCACACAAGTGTTTAGAAAACAGTATCTCATTTTGCTTATAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTGCACACAAGTGTTTAGAAAACAGTATCTCATTTTGCTTATAA  739

seq1  TTGTCTAGAGCCCAAATTAAAAATAAAATACAGGAGAATCATGAAAGACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGAGCCCAAATTAAAAATAAAATACAGGAGAATCATGAAAGACT  789

seq1  TGCTGTTTGGAAAGTCAAGATTTCTGTGTTAAGCCAAGCATGCTAATGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTGGAAAGTCAAGATTTCTGTGTTAAGCCAAGCATGCTAATGAG  839

seq1  TAGATTCTAATGGTTTTATACTTGGATCTAAAAAGCTTTAGTTTTGTGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTAATGGTTTTATACTTGGATCTAAAAAGCTTTAGTTTTGTGAG  889

seq1  AACTCCTTATAGAATTGTATGAATTGAAAAGGAATTCCACAGATGCTGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTATAGAATTGTATGAATTGAAAAGGAATTCCACAGATGCTGAA  939

seq1  AGTAGGTGGATGGATATAAGGTAACCCAATGAATATCAAGGACTAATTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGGATGGATATAAGGTAACCCAATGAATATCAAGGACTAATTGC  989

seq1  TATGCTTAAGACGGTACAAAAATAAAAAGACCACCAACAGATTGGGAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAAGACGGTACAAAAATAAAAAGACCACCAACAGATTGGGAAAG  1039

seq1  GATCTTTACCTATCTTAAATCAGATAGGGGACTAATATCCAATATATATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTACCTATCTTAAATCAGATAGGGGACTAATATCCAATATATATA  1089

seq1  TAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAATAGCCCCCTTAAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAATAGCCCCCTTAAAA  1139

seq1  GATGGGGCTCAGAGCTAAACAAAGAATTC  1172
      |||||||||||||||||||||||||||||
seq2  GATGGGGCTCAGAGCTAAACAAAGAATTC  1168


seq1: chr8_99892462_99893177
seq2: B6Ng01-191P09.g_64_779

seq1  GAATTCAAAAACTTTTAAAAATGTAATTGTAGTAGTCCTGCTGATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACTTTTAAAAATGTAATTGTAGTAGTCCTGCTGATAGACA  50

seq1  ATATGACAGATCATTTGGCTCAGGGATTTTTGTGTGTTTTTTTTTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGATCATTTGGCTCAGGGATTTTTGTGTGTTTTTTTTTCCCCT  100

seq1  GGAGTTTTGTTTATACTCAGACTTTTGTGGTAGCTGAAGGCTATCTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGTTTATACTCAGACTTTTGTGGTAGCTGAAGGCTATCTCCTA  150

seq1  GCCAGTTTGATGGGAGATGGGTTTTGGCAGAGCCCACATGAAATGATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTGATGGGAGATGGGTTTTGGCAGAGCCCACATGAAATGATAAC  200

seq1  TTCTAGTTCTCATATTTTTCCAACTCTGCTTTGTGGATCTGCCATAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCTCATATTTTTCCAACTCTGCTTTGTGGATCTGCCATAATAA  250

seq1  TATCAAATACTATAAAATTGGAAACCAAAGCTTTTGGCACTAGGTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATACTATAAAATTGGAAACCAAAGCTTTTGGCACTAGGTATATC  300

seq1  TAAATGTCAATTATGTCTCTATCTAATTAACTTTTCTCAACCTCAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCAATTATGTCTCTATCTAATTAACTTTTCTCAACCTCAGAATT  350

seq1  CCTGGGTATCCTGAAATTTCAGTTATGGCTTTACTACAACCTCAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATCCTGAAATTTCAGTTATGGCTTTACTACAACCTCAAATCAA  400

seq1  TATAATAAAAAATATGCATACTGCAATCAATGTCTAGGGGTTTATAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAAAATATGCATACTGCAATCAATGTCTAGGGGTTTATAGTCC  450

seq1  TCAACATTGGTTGAATTTTACATTAGAAGTTGTTGGTCAATCAGGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTGGTTGAATTTTACATTAGAAGTTGTTGGTCAATCAGGTATAT  500

seq1  TTTATGACACTATTTTTGCCTCACATTATTTTAAAAGCTTTTAGTATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACACTATTTTTGCCTCACATTATTTTAAAAGCTTTTAGTATCAA  550

seq1  AGTACTGCTTGGAAAAATACTGAAGATTAATAAATATGTTTTGATGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGCTTGGAAAAATACTGAAGATTAATAAATATGTTTTGATGCTAC  600

seq1  AGTCCCAAGTATAAAAATGATAAATGAAGATTTTATGCCCCAGTACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGTATAAAAATGATAAATGAAGATTTTATGCCCCAGTACAGGG  650

seq1  GAATGCCAGGGCCAGGAAACAGGAGTGGCTGGGTTGTGAAGCAGGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAGGGCCAGGAAACAGGAGTGGCTGGGTTGTGAAGCAGGGATGG  700

seq1  GGTAAGAGGGAGGGTA  716
      ||||||||||||||||
seq2  GGTAAGAGGGAGGGTA  716


| Home | SequenceCutter | Blast | Download |