BAC Information

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BAC

Clone NameB6Ng01-196P04
Chromosome8 (Build37)
Map Location 95,418,836 - 95,566,479
singlet/doubletdoublet
Overlap geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2
Downstream geneLOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P04.bB6Ng01-196P04.g
ACCGA018950GA018951
length1,0591,035
definitionB6Ng01-196P04.b B6Ng01-196P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,418,836 - 95,419,887)(95,565,479 - 95,566,479)
sequence
gaattcatagaaacatatttcactcctctttccagctatacatgtttctt
ccctgtccttggccttccatatagaccaggagccggtcttctgcctgcca
cgtattagaaaagaaaatagtgtagagaattaatggtgaatgtaccaaat
agcctctgtctgtctgtccgtctgccctccctcatctgtctccgtgctac
tcctgtgtttttcatacagttacatgtctgtacctgtgaagattctcttt
gctaagcgctgagttatgtgattgccgccacaccttgcgcacacactgac
gtgcacgtgccaggcctgtttcctcagtctcctgagaggactgggctggg
gctgtttgataggagaacaaggagatggagtaatttcaggtctattgctc
tcaggagctactggagtaatttcactgcttagtgggggctgggtgtaagt
cccatgcatttgttaggatttaagagatggagaaccctgactctattgtt
ttactctttcctcccccattacattcttagctaatctaccaaagctgcat
aattatttctaccaatttgtcctaaaaatgctattacttgtgtgctcagt
tcgatactcagaaatttgattgcagacaacataaaggttccaaatgtgac
aaaagccattgtttcctagtttggagtaatttcctttggccaaatcctgc
ctgtgtgagagacaaaagcaaaacactcttttttgtctttgggtttaatt
tcgcttgtttacacttacaaatatttactgaatcccctcatatcaaagac
taagtgggaaatgtgttgaatgctcagattaagtcagagacatggtttag
aacaaaaggctcctctatatttttatagtaataattcaattaagtgctaa
aattattttgccagcacattgaaaggaacttttagtggaaatcaagaaat
aatggccaccttaatttgggagccagtattagggcagaacatttctataa
gagaacaggtgtcttgtcaagaccatagcagcagtgctactacacttaca
aaccctctt
gaattccaagagtgcatgaccaatcttcccagggatttaagcctggaatc
atgtctcagtggaggagacagatgcctaccacagtaagagcagctggagt
tgacatcaggctacctcagtacctgtatgagacaaacgctagagattgtg
tctcattggatctgatagatccctcagcagttagccatacagacatgatt
gctgtttcacgacaaacacaggcatagagttgacattagatcccccttag
gtttgctgtttgactgtagtgggtgccagtgcctctgcatggtcctcatg
gaatctcaggattcttactaaaacccccagacagcttcctatccacacca
gtgtcttaggcctagtaatgcaaattcagtttgtgagcttaaaccacatg
atagaagggccttcccctggggtttatttgtttgtttgaatctcaacaaa
gttttgtttctttctttctccccttccccaggtgctcgcaaatttacagg
gagtgggggccagtgctcctccgaatgtcttttcctaacccaactagaaa
aatgttcctcttgagtattccgaaaaactggcctttacctaaatatttac
ttcccctacaaacctgacaagcaaagacaggttgccgggtaagcactcag
catgaacatccaaacgcttcagcatcctggaatcttccagggcagattaa
agggataaaaggattcctagcagtataggtatttgttagcattgcatgcc
ttcttactttctcttgaacaccgaaaaaaaatgggttttggtacttccag
ttatcccccgtgatgctaagccttatgtgagaagaagaacagaaatatct
gggaaggtacactcttaatttcttggcatgctcctctttacaatggacct
taagaaagcaaaggtttggtcctcttaattgttgtcgagaaatgagaacc
ctgtgaaataagaacaattccagtaagtccaaaatggaaaaattcatgac
caacctcccttgccccacttttatgatgagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_95418836_95419887
seq2: B6Ng01-196P04.b_42_1100

seq1  GAATTCATAGAAACATATTTCACTCCTCTTTCCAGCTATACATGTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAACATATTTCACTCCTCTTTCCAGCTATACATGTTTCTT  50

seq1  CCCTGTCCTTGGCCTTCCATATAGACCAGGAGCCGGTCTTCTGCCTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTTGGCCTTCCATATAGACCAGGAGCCGGTCTTCTGCCTGCCA  100

seq1  CGTATTAGAAAAGAAAATAGTGTAGAGAATTAATGGTGAATGTACCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTAGAAAAGAAAATAGTGTAGAGAATTAATGGTGAATGTACCAAAT  150

seq1  AGCCTCTGTCTGTCTGTCCGTCTGCCCTCCCTCATCTGTCTCCGTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGTCTGTCTGTCCGTCTGCCCTCCCTCATCTGTCTCCGTGCTAC  200

seq1  TCCTGTGTTTTTCATACAGTTACATGTCTGTACCTGTGAAGATTCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTTTTCATACAGTTACATGTCTGTACCTGTGAAGATTCTCTTT  250

seq1  GCTAAGCGCTGAGTTATGTGATTGCCGCCACACCTTGCGCACACACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCGCTGAGTTATGTGATTGCCGCCACACCTTGCGCACACACTGAC  300

seq1  GTGCACGTGCCAGGCCTGTTTCCTCAGTCTCCTGAGAGGACTGGGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGTGCCAGGCCTGTTTCCTCAGTCTCCTGAGAGGACTGGGCTGGG  350

seq1  GCTGTTTGATAGGAGAACAAGGAGATGGAGTAATTTCAGGTCTATTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGATAGGAGAACAAGGAGATGGAGTAATTTCAGGTCTATTGCTC  400

seq1  TCAGGAGCTACTGGAGTAATTTCACTGCTTAGTGGGGGCTGGGTGTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTACTGGAGTAATTTCACTGCTTAGTGGGGGCTGGGTGTAAGT  450

seq1  CCCATGCATTTGTTAGGATTTAAGAGATGGAGAACCCTGACTCTATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCATTTGTTAGGATTTAAGAGATGGAGAACCCTGACTCTATTGTT  500

seq1  TTACTCTTTCCTCCCCCATTACATTCTTAGCTAATCTACCAAAGCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTCCTCCCCCATTACATTCTTAGCTAATCTACCAAAGCTGCAT  550

seq1  AATTATTTCTACCAATTTGTCCTAAAAATGCTATTACTTGTGTGCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCTACCAATTTGTCCTAAAAATGCTATTACTTGTGTGCTCAGT  600

seq1  TCGATACTCAGAAATTTGATTGCAGACAACATAAAGGTTCCAAATGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATACTCAGAAATTTGATTGCAGACAACATAAAGGTTCCAAATGTGAC  650

seq1  AAAAGCCATTGTTTCCTAGTTTGGAGTAATTTCCTTTGGCCAAATCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATTGTTTCCTAGTTTGGAGTAATTTCCTTTGGCCAAATCCTGC  700

seq1  CTGTGTGAGAGACAAAAGCAAAACACTCTTTTTTGTCTTTGGGTTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGAGACAAAAGCAAAACACTCTTTTTTGTCTTTGGGTTTAATT  750

seq1  TCGCTTGTTTACACTTACAAATATTTACTGAAT-CCCTCATATCAAAGAC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCGCTTGTTTACACTTACAAATATTTACTGAATCCCCTCATATCAAAGAC  800

seq1  TAAGTGGGAAATGTGTTGAATGCTCAGA-TAAGTCAGAGACAATGGTTTA  848
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TAAGTGGGAAATGTGTTGAATGCTCAGATTAAGTCAGAGAC-ATGGTTTA  849

seq1  GAAC-AAAGGCCTCTCTATA-TTTTATAGTAATAATTCAAATTAAGTGCT  896
      |||| ||||||  ||||||| ||||||||||||||||| |||||||||||
seq2  GAACAAAAGGCTCCTCTATATTTTTATAGTAATAATTC-AATTAAGTGCT  898

seq1  -AAATTA-TTTGCCAGCACATTTGAAGGAAC-TTTAGT-GAAATCAAGAA  942
       |||||| ||||||||||||||  ||||||| |||||| |||||||||||
seq2  AAAATTATTTTGCCAGCACATTGAAAGGAACTTTTAGTGGAAATCAAGAA  948

seq1  ATAAT-GCCACC-TAAATTGGGAG-CAGTTATAGGGCAG-ACATTTCTAT  988
      ||||| |||||| ||| ||||||| ||||  |||||||| ||||||||||
seq2  ATAATGGCCACCTTAATTTGGGAGCCAGTATTAGGGCAGAACATTTCTAT  998

seq1  -AGAGAACA-GTGTCTTGCCAGGACCATAGCAGCAGTGCTAACTTCACCC  1036
       |||||||| |||||||| || |||||||||||||||||| ||| |||  
seq2  AAGAGAACAGGTGTCTTGTCAAGACCATAGCAGCAGTGCT-ACTACAC--  1045

seq1  TTTACAAACCCCTCTT  1052
       ||||||| |||||||
seq2  -TTACAAA-CCCTCTT  1059

seq1: chr8_95565479_95566479
seq2: B6Ng01-196P04.g_66_1100 (reverse)

seq1  TTTCTCTATCCATAAAAGTGGGACTAGGTGGATGTTGGGTCATGGATTTT  50
      |||||||   |||||||||||| | ||  ||| ||| ||||||| |||||
seq2  TTTCTCTCATCATAAAAGTGGGGCAAG--GGAGGTT-GGTCATGAATTTT  47

seq1  TCCATTTCTGACTTTACTGGAAATTGTCTTAATTCCACAGGGTTCAGA-T  99
      |||||||  ||| ||||||| ||||||  | ||| ||||||||||  | |
seq2  TCCATTTTGGAC-TTACTGG-AATTGTTCTTATTTCACAGGGTTCTCATT  95

seq1  TCTCGAACAACAATTAAGAGAAC--AAACATTGCTTTCCTAAGGTCCATT  147
      ||||| |||||||||||||| ||  || | |||||||| |||||||||||
seq2  TCTCG-ACAACAATTAAGAGGACCAAACCTTTGCTTTCTTAAGGTCCATT  144

seq1  GT-AAGA-GAGCATG-CAAG-AATTAAGA-TGTACC-TACCAGATA-TAC  190
      || |||| ||||||| |||| |||||||| |||||| | ||||||| | |
seq2  GTAAAGAGGAGCATGCCAAGAAATTAAGAGTGTACCTTCCCAGATATTTC  194

seq1  TGTACT--CTCTCACAT-ATGCCTAGCATCACGGGGGATAACT-GAAGTA  236
      ||| ||   |||||||| | || |||||||||||||||||||| ||||||
seq2  TGTTCTTCTTCTCACATAAGGCTTAGCATCACGGGGGATAACTGGAAGTA  244

seq1  CCAAAACC--ATATTTTTCTGTGGTCAAGAG-AAGTAAG-AGGCATGCAT  282
      ||||||||   | |||||| ||| ||||||| ||||||| ||||||||| 
seq2  CCAAAACCCATTTTTTTTCGGTGTTCAAGAGAAAGTAAGAAGGCATGCAA  294

seq1  GGCTAAC-AATACCTATACTGCTA-GAATCC-TTTATCCCTTCTAATCTG  329
       |||||| |||||||||||||||| |||||| |||||||||| |||||||
seq2  TGCTAACAAATACCTATACTGCTAGGAATCCTTTTATCCCTT-TAATCTG  343

seq1  CCCTGGAAGA-TCCAGGATGCTGAAGCGTCTGGATGTTCATGCTTGAGTG  378
      |||||||||| |||||||||||||||||| ||||||||||||| ||||||
seq2  CCCTGGAAGATTCCAGGATGCTGAAGCGTTTGGATGTTCATGC-TGAGTG  392

seq1  CTTA-CCGGCAGCCTGTCTTTGCTTGTCAGGTCTGTAGGGG-AGTAAATA  426
      |||| |||||| |||||||||||||||||||| |||||||| ||||||||
seq2  CTTACCCGGCAACCTGTCTTTGCTTGTCAGGTTTGTAGGGGAAGTAAATA  442

seq1  TTTAGGTAAAGG-CAG-TCTTCAGAATACTCAAGAGGAACA-TTTTCTAG  473
      |||||||||||| ||| | ||| |||||||||||||||||| ||||||||
seq2  TTTAGGTAAAGGCCAGTTTTTCGGAATACTCAAGAGGAACATTTTTCTAG  492

seq1  TT-GGTTA-GTAAAGACA-TCGGA-GAGCACTGG-CCCCACT-CCTGT-A  516
      || ||||| | ||||||| ||||| ||||||||| ||||||| ||||| |
seq2  TTGGGTTAGGAAAAGACATTCGGAGGAGCACTGGCCCCCACTCCCTGTAA  542

seq1  ATTTGCGAGCACCT-GGGAAGGGGAGAAAGAA--GAACAAA--CTTGTTG  561
      |||||||||||||| |||||||||||||||||   ||||||   ||||||
seq2  ATTTGCGAGCACCTGGGGAAGGGGAGAAAGAAAGAAACAAAACTTTGTTG  592

seq1  AGATTCAAACAAACAAATAAACCC--AGGGAAGG-CCTTCTATCATGTGG  608
      ||||||||||||||||||||||||   ||||||| |||||||||||||||
seq2  AGATTCAAACAAACAAATAAACCCCAGGGGAAGGCCCTTCTATCATGTGG  642

seq1  TTTAAGCTCACAAACTGAATTTGCATTACTAGGCCTAAGACACTGGTGTG  658
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCACAAACTGAATTTGCATTACTAGGCCTAAGACACTGGTGTG  692

seq1  GATAGGAAGCTGTCTGGGGGTTTTAGTAAGAATCCTGAGATTCCATGAGG  708
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAGCTGTCTGGGGGTTTTAGTAAGAATCCTGAGATTCCATGAGG  742

seq1  ACCATGCAGAGGCACTGGCACCCACTACAGTCAAACAGCAAACCTAAGGG  758
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAGAGGCACTGGCACCCACTACAGTCAAACAGCAAACCTAAGGG  792

seq1  GGATCTAATGTCAACTCTATGCCTGTGTTTGTCGTGAAACAGCAATCATG  808
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAATGTCAACTCTATGCCTGTGTTTGTCGTGAAACAGCAATCATG  842

seq1  TCTGTATGGCTAACTGCTGAGGGATCTATCAGATCCAATGAGACACAATC  858
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGGCTAACTGCTGAGGGATCTATCAGATCCAATGAGACACAATC  892

seq1  TCTAGCGTTTGTCTCATACAGGTACTGAGGTAGCCTGATGTCAACTCCAG  908
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGTTTGTCTCATACAGGTACTGAGGTAGCCTGATGTCAACTCCAG  942

seq1  CTGCTCTTACTGTGGTAGGCATCTGTCTCCTCCACTGAGACATGATTCCA  958
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTACTGTGGTAGGCATCTGTCTCCTCCACTGAGACATGATTCCA  992

seq1  GGCTTAAATCCCTGGGAAGATTGGTCATGCACTCTTGGAATTC  1001
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAATCCCTGGGAAGATTGGTCATGCACTCTTGGAATTC  1035