BAC Information

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BAC

Clone NameB6Ng01-197F13
Chromosome8 (Build37)
Map Location 55,524,599 - 55,525,741
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197F13.bB6Ng01-197F13.g
ACCGA019235GA019236
length1,2281,138
definitionB6Ng01-197F13.b B6Ng01-197F13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacagccaagtaaattgtgagaagctggaagcaatcccactaac
atcagggactagacaaagctgcccactttctccctacctattcaacatag
tacttgaattcctagccagagcaattcgacaacaaaaggtgatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgctgatgatat
gatagtatatataagtgaccctaaatattccaccagagaaatcctaagcc
tgataaatagcttcagtgaagtagctggatataaaattaactcaaagaag
tcaatggcctttctgtacacaaaggataaacagacttagaaagaaattag
ggaaataacacccttctcaatagtcacaaataatagaaaatatcttggtg
tgactctaactaaggaagtgtaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattcacaagattaacattgtaaaaatggctatcttgccaaaag
ctatctacagattcaaagcaatacccatcaaaattccaactcaattcttc
aacgaattagaaaaggcaatcggcagattcatctggaataacaaaaaatc
taagatatcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgatctaaagctgtactacagagcaattgtgatagaaactgca
tggtactgatatatcgacagacaagtagaccaatggaatacacttgaaga
cccagaaatgaacccacacacctatggtcactttgatctttgccaaggga
gctaaaaccatcaagtggaagaaagacagctttttcaacaaatggtgctg
gcacaacttgcagttatcatgtagaagaatgcgaattgatccattcctat
tctccttgtactaaggtcaaatctaagtggatagacctccacataacacc
agaagacacctgaaacttatagagtgaaaggtaggcaaaactctgtaaga
atatgcttacaggtaaaactcttgaatagaacagcattgccttgtactgt
aggatcggaattgccatggacctataaattgcaagcttctcaagcaaaga
acactgtccattaggacaatagagtaat
gaattctgtagaaataggacattgtaataagagttgattgctagatcata
aaattagtctactgatttgctatctcggtatgaacaatctttatcctaat
gggacttctggactacaaggctctgggagcagatggttctttcatgtagc
tccctctcagtctaaacactgtccacatggattactgctcctacatagtt
gattcctttaaataaatgtcttcttgttgacttttgatgttgattatttg
aaaatcaactttcaagtttaattttgtctaaataaactctctggaaactt
cactatcgaaaagtaataacacatgatattaataaacaagcggatttaag
ttcttaaagaaatgttctctgcacgtggtaaatataaccagaactgaact
cacatcttcacagtgacatttgttagtgtttaaatacagggagaattact
taagcgctccgtgtttcaatttacctatttgtaaaagtatgctaatagtg
gcaacctaaacacatgcagcaaagtttaaatgagattcagtacataaaat
atgtagtttagtgtttagtgtatggtcaccaaagttttaacgcatattga
gttggggatgcagttcatttgggagagcctttgcttagcatgcatgaagc
cctggatttgatcccaagcaacacataaagctaggcataacaatgcaggt
ctgttatcttagccatcaggagacttagaatcaggaacttcaagattatc
ttgcaacagtgttgaaggcaaacttgtattacatgacatcctatatcaat
agattaatacatactattgtatggactattaatgtggttgctggatcttt
tcttttttatcttttgcatagtgctgagtgataaagcaagaagacatgac
tgggagtagaataaaaagctatgaattctaagagtctaggatttgatgaa
gaataacatgggaaccacagtagaactatatagagagcagtgagtttcct
acacttgagtaagaagttaatgtccaaactttccattcttaacacttcct
aatatttctctttcctcactgtgatgggttgagggtgctgcaagctcttt
tctaatactggatttggtaagaatttgaatcctctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55524599_55525741
seq2: B6Ng01-197F13.g_68_1205 (reverse)

seq1  CAGAGAGGATTTCAAATTCTTTACAAATATCAAAGGTA-TAGAAAAGGAA  49
      ||||||||| |||||||||||  |||  ||| |  ||| ||||||||  |
seq2  CAGAGAGGA-TTCAAATTCTTACCAA--ATCCA--GTATTAGAAAAG--A  43

seq1  GCCTGCAGCCACCTCAAAACCATCAACAGTGAGGAAAAGAGAAATATAGG  99
      || ||||||  |||| || ||||| ||||||||| ||||||||||||  |
seq2  GCTTGCAGCACCCTC-AACCCATC-ACAGTGAGG-AAAGAGAAATATTAG  90

seq1  GAAGTGT--AGAATGGAAAGTTTGGACATTAACTTCTTACTTCAAGTGTA  147
      |||||||  ||||||||||||||||||||||||||||||| |||||||||
seq2  GAAGTGTTAAGAATGGAAAGTTTGGACATTAACTTCTTAC-TCAAGTGTA  139

seq1  GG-AACTCACTGGCTCTCTATATAGTTCTACTGT-GTTCCCATG-TATTC  194
      || |||||||| |||||||||||||||||||||| ||||||||| |||||
seq2  GGAAACTCACT-GCTCTCTATATAGTTCTACTGTGGTTCCCATGTTATTC  188

seq1  TTCATCAAATCCTTAGAACTCTTAGAATTCATAGCTTTTTATTCTACT-C  243
      |||||||||||| ||| ||||||||||||||||||||||||||||||| |
seq2  TTCATCAAATCC-TAG-ACTCTTAGAATTCATAGCTTTTTATTCTACTCC  236

seq1  CAGTCATGTCTTCTTGC-TTATCACTCAGCACTATGCAAAAGAT-AAAAA  291
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CAGTCATGTCTTCTTGCTTTATCACTCAGCACTATGCAAAAGATAAAAAA  286

seq1  GAAAAGATCCAGCAACCACATTAATAGTCCATACAATAGTATGTATTAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATCCAGCAACCACATTAATAGTCCATACAATAGTATGTATTAAT  336

seq1  CTATTGATATAGGATGTCATGTAATACAAGTTTGCCTTCAACACTGTTGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATATAGGATGTCATGTAATACAAGTTTGCCTTCAACACTGTTGC  386

seq1  AAGATAATCTTGAAGTTCCTGATTCTAAGTCTCCTGATGGCTAAGATAAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATCTTGAAGTTCCTGATTCTAAGTCTCCTGATGGCTAAGATAAC  436

seq1  AGACCTGCATTGTTATGCCTAGCTTTATGTGTTGCTTGGGATCAAATCCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCATTGTTATGCCTAGCTTTATGTGTTGCTTGGGATCAAATCCA  486

seq1  GGGCTTCATGCATGCTAAGCAAAGGCTCTCCCAAATGAACTGCATCCCCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATGCATGCTAAGCAAAGGCTCTCCCAAATGAACTGCATCCCCA  536

seq1  ACTCAATATGCGTTAAAACTTTGGTGACCATACACTAAACACTAAACTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATATGCGTTAAAACTTTGGTGACCATACACTAAACACTAAACTAC  586

seq1  ATATTTTATGTACTGAATCTCATTTAAACTTTGCTGCATGTGTTTAGGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATGTACTGAATCTCATTTAAACTTTGCTGCATGTGTTTAGGTT  636

seq1  GCCACTATTAGCATACTTTTACAAATAGGTAAATTGAAACACGGAGCGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATTAGCATACTTTTACAAATAGGTAAATTGAAACACGGAGCGCT  686

seq1  TAAGTAATTCTCCCTGTATTTAAACACTAACAAATGTCACTGTGAAGATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTCTCCCTGTATTTAAACACTAACAAATGTCACTGTGAAGATG  736

seq1  TGAGTTCAGTTCTGGTTATATTTACCACGTGCAGAGAACATTTCTTTAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAGTTCTGGTTATATTTACCACGTGCAGAGAACATTTCTTTAAG  786

seq1  AACTTAAATCCGCTTGTTTATTAATATCATGTGTTATTACTTTTCGATAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATCCGCTTGTTTATTAATATCATGTGTTATTACTTTTCGATAG  836

seq1  TGAAGTTTCCAGAGAGTTTATTTAGACAAAATTAAACTTGAAAGTTGATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCCAGAGAGTTTATTTAGACAAAATTAAACTTGAAAGTTGATT  886

seq1  TTCAAATAATCAACATCAAAAGTCAACAAGAAGACATTTATTTAAAGGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAATCAACATCAAAAGTCAACAAGAAGACATTTATTTAAAGGAA  936

seq1  TCAACTATGTAGGAGCAGTAATCCATGTGGACAGTGTTTAGACTGAGAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATGTAGGAGCAGTAATCCATGTGGACAGTGTTTAGACTGAGAGG  986

seq1  GAGCTACATGAAAGAACCATCTGCTCCCAGAGCCTTGTAGTCCAGAAGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACATGAAAGAACCATCTGCTCCCAGAGCCTTGTAGTCCAGAAGTC  1036

seq1  CCATTAGGATAAAGATTGTTCATACCGAGATAGCAAATCAGTAGACTAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGATAAAGATTGTTCATACCGAGATAGCAAATCAGTAGACTAAT  1086

seq1  TTTATGATCTAGCAATCAACTCTTATTACAATGTCCTATTTCTACAGAAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCTAGCAATCAACTCTTATTACAATGTCCTATTTCTACAGAAT  1136

seq1  TC  1143
      ||
seq2  TC  1138