BAC Information

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BAC

Clone NameB6Ng01-202G14
Chromosome8 (Build37)
Map Location 88,805,915 - 88,923,843
singlet/doubletdoublet
Overlap genenone
Upstream geneVps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G14.bB6Ng01-202G14.g
ACCGA022909GA022910
length1,1541,185
definitionB6Ng01-202G14.b B6Ng01-202G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,922,698 - 88,923,843)(88,805,915 - 88,807,064)
sequence
gaattcatggtcctcctacatcagcctactaaatgctaggatcatagttg
ttaaattcatggtcctcctacattagcctactaagtgctaggatgatgga
catgttccaccttgcctatcagcatctgattttgaaagcataccagacct
ggcagcacagattagagtaagcattggagaaaccaggattgtcaatcaac
tgatggaacgaatgacttctggaacaccagagttaaaactggtcagtcaa
cctggagagtctttgtgcttagagccagacttccctggaatgccccagta
tcctgtgcactgttccagccctaatcctgcagggagtggaacacacccct
aggaaagaggccccatgcactttatgctgagaactcgatcttgggagtcc
tgagcccataccagtctcttccagggagagtcagcacactagaaacggaa
atcaagctaacagatgaattaaactaatcttcaaagtttttctagtgtat
tctcttgacagtatgggaattccttggaaacagtatttgtcactgaaaaa
gtatttgctagaagttgaggaatttaggatgttatccgttatttttcttc
tgttggtttcatacataattaatttttttcaaagtacatttagttctgtt
cttacaggaatatttctttgccccgtaggtgttcacagagatgtctggaa
ccatgtttgctgagtactgataccaggcgacaccaggagacttgtacttg
ctgtgtcaatatttgtgtttttctgtcttgtttgcacatttaatcgtcaa
tgcacagtactcaagaaaatttttggtcagagactagggtccacaaatgg
cttcaagaggagtcctaaattacacttagcgttttatgagtcatttgtgc
ccacccatacttttccttgggaaccatgtgtgctttcactgagttaacta
agtttttctaagtctagcatgttagtcctgtgcttctgcccttctctggg
tcatgtgtcccatgtttgttgtgtgtccctttcccctttcttcttaagcc
tctgccccatcacatatactacccctagactaatgctagatgtcagcatt
atttcttgggaatctcacgtactttggaagaattagaccatggcaacata
tata
gaattcagtttctcattaggaaaggagaagggttggtgagaagacagata
ataaacagtaaagtaagtgaggtgtgtggtgtttgaatgagaatcgtccg
ggacaggttcatgtatctgagcatttggccttgaaagtctgagtagaggg
atagcaggctctaatttccaataggaagatgaactctggctgctgggaag
caggaccaagagggagcaaatggctaagaagcccgcaggacactcacaag
gcttagtagcacgtcttgcaagagatgtcaacagccaggcggtgctcttg
tgggatctggacacaaactgaggtgagagccttcagagattcctcagtgg
ctacatgagcagttcaagaagaagacaggagtccagggacccaagctttt
cacccaagcagctagagaatggagctgagtgtgatgggcggggaggcctc
tgattacaagtctgagggacaatcgggaactagcgtagggtgttgctgag
ctgtcaagaaggcagggggacatgagctggagctgaggaagaagcctgag
aaggagatcattttttttccaccaaaccgaaggtgattcctgggctcccc
acttccaaatattatattgatttattttctgttacttcgataaaacacca
tgtcctcaagcaacataaggaaggggtttttttggcctacagttgtagag
ggctaaacatctagaatggctggaagccacatcttctatgtaagaaacag
acagaaccggaaatgggttaagtctataacctcagaaacccaccccagtg
acatattcctcaagcaaggctggattatctaaagattacacacacacaca
cacacacacacacacacacacacacaccaaattagcatcatcaattgggg
actaagtgtttaaaatacatgagccctatggaggacattgctcatttcaa
accaccaaccaaatccagtaggaaatgggcaggaaccatagccggccttt
tccagtagccaggatcatcagagaattttcctcaaggcaaaaccagaaac
agggtacttgtgtctcctaagaagggggtccccgcacagggcctacctgg
tgggcggtttggccaggtatcccagagagcaggccctagcctgttagaat
aatagcttgatgttttgttcctaagctctccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88922698_88923843
seq2: B6Ng01-202G14.b_46_1199 (reverse)

seq1  TATATATG-TGCAAGGGTCTAATTCT--CAAAGTTACGTGAGGAT-CCAA  46
      |||||||| ||| | |||||||||||  ||||| ||||||||  | ||||
seq2  TATATATGTTGCCATGGTCTAATTCTTCCAAAG-TACGTGAGATTCCCAA  49

seq1  G-AATAATGCCTGACATCTAACCAATAGTCTA-GGGTAGT-TATGTGATT  93
      | ||||||| ||||||||| | || ||||||| ||||||| |||||||| 
seq2  GAAATAATG-CTGACATCT-AGCATTAGTCTAGGGGTAGTATATGTGATG  97

seq1  GGGCAGAGGCTTAAG-AGAAAGGGGAAAGGGACACACAAC-AACATGGGA  141
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GGGCAGAGGCTTAAGAAGAAAGGGGAAAGGGACACACAACAAACATGGGA  147

seq1  CACATGA-CCAGAGAAGGGCAGAAGCACAGGACT-ACATGCTAGACTTAG  189
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  CACATGACCCAGAGAAGGGCAGAAGCACAGGACTAACATGCTAGACTTAG  197

seq1  AAAAACTTAGTTAACTCAGTGAAAGCACACATGGTTCCCAAGGAAAAGTA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTAGTTAACTCAGTGAAAGCACACATGGTTCCCAAGGAAAAGTA  247

seq1  TGGGTGGGCACAAATGACTCATAAAACGCTAAGTGTAATTTAGGACTCCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGCACAAATGACTCATAAAACGCTAAGTGTAATTTAGGACTCCT  297

seq1  CTTGAAGCCATTTGTGGACCCTAGTCTCTGACCAAAAATTTTCTTGAGTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCCATTTGTGGACCCTAGTCTCTGACCAAAAATTTTCTTGAGTA  347

seq1  CTGTGCATTGACGATTAAATGTGCAAACAAGACAGAAAAACACAAATATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATTGACGATTAAATGTGCAAACAAGACAGAAAAACACAAATATT  397

seq1  GACACAGCAAGTACAAGTCTCCTGGTGTCGCCTGGTATCAGTACTCAGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAAGTACAAGTCTCCTGGTGTCGCCTGGTATCAGTACTCAGCA  447

seq1  AACATGGTTCCAGACATCTCTGTGAACACCTACGGGGCAAAGAAATATTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTTCCAGACATCTCTGTGAACACCTACGGGGCAAAGAAATATTC  497

seq1  CTGTAAGAACAGAACTAAATGTACTTTGAAAAAAATTAATTATGTATGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAACAGAACTAAATGTACTTTGAAAAAAATTAATTATGTATGAA  547

seq1  ACCAACAGAAGAAAAATAACGGATAACATCCTAAATTCCTCAACTTCTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGAAGAAAAATAACGGATAACATCCTAAATTCCTCAACTTCTAG  597

seq1  CAAATACTTTTTCAGTGACAAATACTGTTTCCAAGGAATTCCCATACTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTTTTCAGTGACAAATACTGTTTCCAAGGAATTCCCATACTGT  647

seq1  CAAGAGAATACACTAGAAAAACTTTGAAGATTAGTTTAATTCATCTGTTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATACACTAGAAAAACTTTGAAGATTAGTTTAATTCATCTGTTA  697

seq1  GCTTGATTTCCGTTTCTAGTGTGCTGACTCTCCCTGGAAGAGACTGGTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTCCGTTTCTAGTGTGCTGACTCTCCCTGGAAGAGACTGGTAT  747

seq1  GGGCTCAGGACTCCCAAGATCGAGTTCTCAGCATAAAGTGCATGGGGCCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGGACTCCCAAGATCGAGTTCTCAGCATAAAGTGCATGGGGCCT  797

seq1  CTTTCCTAGGGGTGTGTTCCACTCCCTGCAGGATTAGGGCTGGAACAGTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAGGGGTGTGTTCCACTCCCTGCAGGATTAGGGCTGGAACAGTG  847

seq1  CACAGGATACTGGGGCATTCCAGGGAAGTCTGGCTCTAAGCACAAAGACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATACTGGGGCATTCCAGGGAAGTCTGGCTCTAAGCACAAAGACT  897

seq1  CTCCAGGTTGACTGACCAGTTTTAACTCTGGTGTTCCAGAAGTCATTCGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTTGACTGACCAGTTTTAACTCTGGTGTTCCAGAAGTCATTCGT  947

seq1  TCCATCAGTTGATTGACAATCCTGGTTTCTCCAATGCTTACTCTAATCTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTTGATTGACAATCCTGGTTTCTCCAATGCTTACTCTAATCTG  997

seq1  TGCTGCCAGGTCTGGTATGCTTTCAAAATCAGATGCTGATAGGCAAGGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAGGTCTGGTATGCTTTCAAAATCAGATGCTGATAGGCAAGGTG  1047

seq1  GAACATGTCCATCATCCTAGCACTTAGTAGGCTAATGTAGGAGGACCATG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTCCATCATCCTAGCACTTAGTAGGCTAATGTAGGAGGACCATG  1097

seq1  AATTTAACAACTATGATCCTAGCATTTAGTAGGCTGATGTAGGAGGACCA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACAACTATGATCCTAGCATTTAGTAGGCTGATGTAGGAGGACCA  1147

seq1  TGAATTC  1146
      |||||||
seq2  TGAATTC  1154

seq1: chr8_88805915_88807064
seq2: B6Ng01-202G14.g_63_1247

seq1  GAATTCAGTTTCTCATTAGGAAAGGAGAAGGGTTGGTGAGAAGACAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTCATTAGGAAAGGAGAAGGGTTGGTGAGAAGACAGATA  50

seq1  ATAAACAGTAAAGTAAGTGAGGTGTGTGGTGTTTGAATGAGAATCGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTAAAGTAAGTGAGGTGTGTGGTGTTTGAATGAGAATCGTCCG  100

seq1  GGACAGGTTCATGTATCTGAGCATTTGGCCTTGAAAGTCTGAGTAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTTCATGTATCTGAGCATTTGGCCTTGAAAGTCTGAGTAGAGGG  150

seq1  ATAGCAGGCTCTAATTTCCAATAGGAAGATGAACTCTGGCTGCTGGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGCTCTAATTTCCAATAGGAAGATGAACTCTGGCTGCTGGGAAG  200

seq1  CAGGACCAAGAGGGAGCAAATGGCTAAGAAGCCCGCAGGACACTCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAAGAGGGAGCAAATGGCTAAGAAGCCCGCAGGACACTCACAAG  250

seq1  GCTTAGTAGCACGTCTTGCAAGAGATGTCAACAGCCAGGCGGTGCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGCACGTCTTGCAAGAGATGTCAACAGCCAGGCGGTGCTCTTG  300

seq1  TGGGATCTGGACACAAACTGAGGTGAGAGCCTTCAGAGATTCCTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGGACACAAACTGAGGTGAGAGCCTTCAGAGATTCCTCAGTGG  350

seq1  CTACATGAGCAGTTCAAGAAGAAGACAGGAGTCCAGGGACCCAAGCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAGCAGTTCAAGAAGAAGACAGGAGTCCAGGGACCCAAGCTTTT  400

seq1  CACCCAAGCAGCTAGAGAATGGAGCTGAGTGTGATGGGCGGGGAGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGCAGCTAGAGAATGGAGCTGAGTGTGATGGGCGGGGAGGCCTC  450

seq1  TGATTACAAGTCTGAGGGACAATCGGGAACTAGCGTAGGGTGTTGCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACAAGTCTGAGGGACAATCGGGAACTAGCGTAGGGTGTTGCTGAG  500

seq1  CTGTCAAGAAGGCAGGGGGACATGAGCTGGAGCTGAGGAAGAAGCCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGAAGGCAGGGGGACATGAGCTGGAGCTGAGGAAGAAGCCTGAG  550

seq1  AAGGAGATCATTTTTTTTCCACCAAACCGAAGGTGATTCCTGGGCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCATTTTTTTTCCACCAAACCGAAGGTGATTCCTGGGCTCCCC  600

seq1  ACTTCCAAATATTATATTGATTTATTTTCTGTTACTTCGATAAAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAATATTATATTGATTTATTTTCTGTTACTTCGATAAAACACCA  650

seq1  TGTCCTCAAGCAACATAAGGAAGGGGTTTTTTTGGCCTACAGTTGTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAAGCAACATAAGGAAGGGGTTTTTTTGGCCTACAGTTGTAGAG  700

seq1  GGCTAAACATCTAGAATGGCTGGAAGCCACATCTTCTATGTAAGAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACATCTAGAATGGCTGGAAGCCACATCTTCTATGTAAGAAACAG  750

seq1  ACAGAACCGGAAATGGGTTAAGTCTATAACCTCAGAAACCCACCCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCGGAAATGGGTTAAGTCTATAACCTCAGAAACCCACCCCAGTG  800

seq1  ACATATTCCTCAAGCAAGGCTGGATTATCTAAAGATTACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCCTCAAGCAAGGCTGGATTATCTAAAGATTACACACACACACA  850

seq1  CACACACACACACACACACACACACACC-AATTAGCATCATCAATTGGGG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACACACACACACACACACACACACACCAAATTAGCATCATCAATTGGGG  900

seq1  ACTAAGTGTTT-AAATACATGAG-CCTATGGAGGACATTGCTCA-TTCAA  946
      ||||||||||| ||||||||||| |||||||||||||||||||| |||||
seq2  ACTAAGTGTTTAAAATACATGAGCCCTATGGAGGACATTGCTCATTTCAA  950

seq1  ACCAC--AACAAATCCAGTAGGAAAT-GGCAGGAACCATAG-CGGC--TT  990
      |||||  | ||||||||||||||||| |||||||||||||| ||||  ||
seq2  ACCACCAACCAAATCCAGTAGGAAATGGGCAGGAACCATAGCCGGCCTTT  1000

seq1  TTCAGTAG-CAGGATCATCAGAG-ATTTTCCTCAAAGCAAAACCAG-AAC  1037
      | |||||| |||||||||||||| ||||||||||| |||||||||| |||
seq2  TCCAGTAGCCAGGATCATCAGAGAATTTTCCTCAAGGCAAAACCAGAAAC  1050

seq1  AGGGTAC-TGTGTCTC--TAGA--GGTGTCCCCG-GCAGGG-CTAACT-G  1079
      ||||||| ||||||||   |||  || |||||||  ||||| ||| || |
seq2  AGGGTACTTGTGTCTCCTAAGAAGGGGGTCCCCGCACAGGGCCTACCTGG  1100

seq1  TGGGCG--TTGG-CAGGGATCC---AGAGCAGG-GCTAG-CTG-TAGA--  1118
      ||||||  |||| |||| ||||   ||||||||  |||| ||| ||||  
seq2  TGGGCGGTTTGGCCAGGTATCCCAGAGAGCAGGCCCTAGCCTGTTAGAAT  1150

seq1  TATAGC-TGATGTTTTGTT-CTTAGC-CTCCCTGC  1150
       ||||| |||||||||||| || ||| ||||||||
seq2  AATAGCTTGATGTTTTGTTCCTAAGCTCTCCCTGC  1185