BAC Information

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BAC

Clone NameB6Ng01-206A15
Chromosome8 (Build37)
Map Location 55,054,483 - 55,187,510
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206A15.bB6Ng01-206A15.g
ACCGA025559GA025560
length1,1731,134
definitionB6Ng01-206A15.b B6Ng01-206A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,186,318 - 55,187,510)(55,054,483 - 55,055,631)
sequence
gaattccaaacattgatgataatgacagatgacatctgcattgtagcatc
ttggccacccatgaaggttatttgataactagatataaataaaatgcaat
attcttcaaccactgaaatgcatctttgtgttatatacaaccaaatctca
aagtatttggtaaagtcatttgagactgaaataaaattattttatggttt
gccttaactgctgaaagttctttctagtatcaaagaacatactacagaac
tttagtactttctggaatcaaagaccatgaaagcttgggaaagaagattg
aagaaagaaaagtaagagcaagttgttaaaaggtataaaagcacagagga
aagtaataaggaaagcacttgatcaatgagaagcaaaactgattcttcct
ttattttcagctgattcattatgctcaataaatattcatttaaatgctaa
ttttcagaaacccagatatacacttagaagaacaacttcatttcaaatca
aaataaaaaaggcaagttaatattctacacttttgaaacctacatgccct
cagtaaatttctaggaagaaaaaagtagaaaccataatcatcaataatat
ataacatagagtggatttacgctatgcacataatgtacttcttgaaaaaa
aaacatacactttgggatctttaatttgtgtcacagccaatgatttcaat
agaatgaaatggaatacaaaataaaagttctagttgatgttttgattcct
gaaactcgagggtaatgtttaaaatttaatttaatgcattagtttttaag
taatataggaaggagtatgtgatgcagctactaactttggaagactaagt
gaaaaggggagaaagcacgctgtcagccgttctgcaactgggtaatgtta
agacaattagtccacactcgggatgtttgtcagatgtccacagagtgtac
acaacatgtaagggaaaagaatgaaactaagcataaacacatagtcagga
tcggaaaacatgacaaccttagcaattacaatgtttgatttcttcagcct
ttaatactagtactcaggagcagaagacaggcaactctgagtcatgatca
gctggtctacagattgaatcatgacagcatgctatgtaaagaaactgtct
ctggcatataggagaatgatgtc

gaattcagcattgaatcagtttatttgtattttcagtctactctcatgaa
cttgacatattgataagccttcagcaaaagtcttttcagaaggaaaagcc
atcattatattttgaccagaaactcaattatttgatatgttgtcatatga
gtacactttggggactccgacctctagattggtgtcatacagataaagcc
tttgtatagatctgttctctgaagggctttatttcataaaaatatacagt
cttactttctccctctgactcaaagctagaaataaatcaactgagataaa
tttaaaagattttcagaatttctcagaatattcttacaatgcttcaaaat
atcaattaatacatttgaaccccctcaagaaatgattaatgttgcaaact
ggcaaattacatatatagtattttctaacacatatgtaagtgattataga
tagctacatatattgtcttctgtcactatcttgtgtttatttattcaaat
attgatttatgtaaaatatttcatatcttctcaacatctttttcgttttc
tttttaatattttttattatgtattttccacaattacatttccaatgcta
tcccaaaagtcccccatatcttctcaacatcttataaaataaaatatact
gcttacatgtcaaaataattgtgatcaatgcagaataaaatgtcactttg
tagtacttgagacctaatattacacgtaaacatctgaataactgcatcca
ttagtaacatacagtgtgtgagaccctgaattcagtgctgaaaatctgtc
aagcaggtcactccttttaagttattgattaatttcaagatacttaagtc
cacaatcttctcctccactttcctttcagtcactgcatatgcatgagaaa
tagaattctgttttatctcatattcataatagaatcttgagaaccacaat
ccaacccaagggtcagtaaacaacaccactattcgtagctggagaaaatt
ctggaaccagagactactatggccaggtagataaccacagttatatttct
ttacctatcacatttagaaactgacatttatggaagcacatctatttgct
tggagataaactcatctgtcaaattggattacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55186318_55187510
seq2: B6Ng01-206A15.b_45_1217 (reverse)

seq1  GACATCAATTCTCCCTATTATCCCAGAGACAGTATCTTTTTACATAGCAT  50
      |||||| ||||| |||| ||| ||||||||||| ||  ||||||||||||
seq2  GACATC-ATTCT-CCTA-TATGCCAGAGACAGTTTC--TTTACATAGCAT  45

seq1  TGGCTGTCCTGGAACTCAATCTGTAGACCAGGCTGATCATGACCTCAGAA  100
        |||||| ||  | ||||||||||||||| ||||||||||| |||||| 
seq2  --GCTGTCATG--ATTCAATCTGTAGACCA-GCTGATCATGA-CTCAGA-  88

seq1  GTTTGCCTGTC-TCTGCCTCCTGAGTACTAGTATTAAAGGCTTGGAGAAA  149
        ||||||||| |||| |||||||||||||||||||||||| || |||||
seq2  -GTTGCCTGTCTTCTG-CTCCTGAGTACTAGTATTAAAGGC-TGAAGAAA  135

seq1  TCAAACATTGTAATTGCTAAGGTTGGTCATGTTTTTCCGATTCTTGACTA  199
      |||||||||||||||||||||||| |||||| |||||||| || ||||||
seq2  TCAAACATTGTAATTGCTAAGGTT-GTCATG-TTTTCCGA-TCCTGACTA  182

seq1  TGTTGTTTATGCTTTAGTTTCATTTCTTTTCCCTTACATGTTGTGTACAC  249
      || ||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TG-TGTTTATGC-TTAGTTTCA-TTCTTTTCCCTTACATGTTGTGTACAC  229

seq1  TCTGTGGACATCTGACAAACATCCCGAGTGTGGACTAATTGTCTTAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGACATCTGACAAACATCCCGAGTGTGGACTAATTGTCTTAACAT  279

seq1  TACCCAGTTGCAGAACGGCTGACAGCGTGCTTTCTCCCCTTTTCACTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTTGCAGAACGGCTGACAGCGTGCTTTCTCCCCTTTTCACTTAG  329

seq1  TCTTCCAAAGTTAGTAGCTGCATCACATACTCCTTCCTATATTACTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAAGTTAGTAGCTGCATCACATACTCCTTCCTATATTACTTAAA  379

seq1  AACTAATGCATTAAATTAAATTTTAAACATTACCCTCGAGTTTCAGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGCATTAAATTAAATTTTAAACATTACCCTCGAGTTTCAGGAAT  429

seq1  CAAAACATCAACTAGAACTTTTATTTTGTATTCCATTTCATTCTATTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATCAACTAGAACTTTTATTTTGTATTCCATTTCATTCTATTGAA  479

seq1  ATCATTGGCTGTGACACAAATTAAAGATCCCAAAGTGTATGTTTTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGCTGTGACACAAATTAAAGATCCCAAAGTGTATGTTTTTTTTT  529

seq1  CAAGAAGTACATTATGTGCATAGCGTAAATCCACTCTATGTTATATATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTACATTATGTGCATAGCGTAAATCCACTCTATGTTATATATTA  579

seq1  TTGATGATTATGGTTTCTACTTTTTTCTTCCTAGAAATTTACTGAGGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATTATGGTTTCTACTTTTTTCTTCCTAGAAATTTACTGAGGGCA  629

seq1  TGTAGGTTTCAAAAGTGTAGAATATTAACTTGCCTTTTTTATTTTGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTCAAAAGTGTAGAATATTAACTTGCCTTTTTTATTTTGATTT  679

seq1  GAAATGAAGTTGTTCTTCTAAGTGTATATCTGGGTTTCTGAAAATTAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGTTGTTCTTCTAAGTGTATATCTGGGTTTCTGAAAATTAGCA  729

seq1  TTTAAATGAATATTTATTGAGCATAATGAATCAGCTGAAAATAAAGGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAATATTTATTGAGCATAATGAATCAGCTGAAAATAAAGGAAG  779

seq1  AATCAGTTTTGCTTCTCATTGATCAAGTGCTTTCCTTATTACTTTCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTTTGCTTCTCATTGATCAAGTGCTTTCCTTATTACTTTCCTCT  829

seq1  GTGCTTTTATACCTTTTAACAACTTGCTCTTACTTTTCTTTCTTCAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTATACCTTTTAACAACTTGCTCTTACTTTTCTTTCTTCAATCT  879

seq1  TCTTTCCCAAGCTTTCATGGTCTTTGATTCCAGAAAGTACTAAAGTTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCAAGCTTTCATGGTCTTTGATTCCAGAAAGTACTAAAGTTCTG  929

seq1  TAGTATGTTCTTTGATACTAGAAAGAACTTTCAGCAGTTAAGGCAAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTTCTTTGATACTAGAAAGAACTTTCAGCAGTTAAGGCAAACCA  979

seq1  TAAAATAATTTTATTTCAGTCTCAAATGACTTTACCAAATACTTTGAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTTATTTCAGTCTCAAATGACTTTACCAAATACTTTGAGAT  1029

seq1  TTGGTTGTATATAACACAAAGATGCATTTCAGTGGTTGAAGAATATTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTATATAACACAAAGATGCATTTCAGTGGTTGAAGAATATTGCA  1079

seq1  TTTTATTTATATCTAGTTATCAAATAACCTTCATGGGTGGCCAAGATGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATATCTAGTTATCAAATAACCTTCATGGGTGGCCAAGATGCT  1129

seq1  ACAATGCAGATGTCATCTGTCATTATCATCAATGTTTGGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGATGTCATCTGTCATTATCATCAATGTTTGGAATTC  1173


seq1: chr8_55054483_55055631
seq2: B6Ng01-206A15.g_62_1195

seq1  GAATTCAGCATTGAATCAGTTTATTTGTATTTTCAGTCTACTCTCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTGAATCAGTTTATTTGTATTTTCAGTCTACTCTCATGAA  50

seq1  CTTGACATATTGATAAGCCTTCAGCAAAAGTCTTTTCAGAAGGAAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATATTGATAAGCCTTCAGCAAAAGTCTTTTCAGAAGGAAAAGCC  100

seq1  ATCATTATATTTTGACCAGAAACTCAATTATTTGATATGTTGTCATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATATTTTGACCAGAAACTCAATTATTTGATATGTTGTCATATGA  150

seq1  GTACACTTTGGGGACTCCGACCTCTAGATTGGTGTCATACAGATAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTTGGGGACTCCGACCTCTAGATTGGTGTCATACAGATAAAGCC  200

seq1  TTTGTATAGATCTGTTCTCTGAAGGGCTTTATTTCATAAAAATATACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAGATCTGTTCTCTGAAGGGCTTTATTTCATAAAAATATACAGT  250

seq1  CTTACTTTCTCCCTCTGACTCAAAGCTAGAAATAAATCAACTGAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTCTCCCTCTGACTCAAAGCTAGAAATAAATCAACTGAGATAAA  300

seq1  TTTAAAAGATTTTCAGAATTTCTCAGAATATTCTTACAATGCTTCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATTTTCAGAATTTCTCAGAATATTCTTACAATGCTTCAAAAT  350

seq1  ATCAATTAATACATTTGAACCCCCTCAAGAAATGATTAATGTTGCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAATACATTTGAACCCCCTCAAGAAATGATTAATGTTGCAAACT  400

seq1  GGCAAATTACATATATAGTATTTTCTAACACATATGTAAGTGATTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTACATATATAGTATTTTCTAACACATATGTAAGTGATTATAGA  450

seq1  TAGCTACATATATTGTCTTCTGTCACTATCTTGTGTTTATTTATTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACATATATTGTCTTCTGTCACTATCTTGTGTTTATTTATTCAAAT  500

seq1  ATTGATTTATGTAAAATATTTCATATCTTCTCAACATCTTTTTCGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTATGTAAAATATTTCATATCTTCTCAACATCTTTTTCGTTTTC  550

seq1  TTTTTAATATTTTTTATTATGTATTTTCCACAATTACATTTCCAATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATTTTTTATTATGTATTTTCCACAATTACATTTCCAATGCTA  600

seq1  TCCCAAAAGTCCCCCATATCTTCTCAACATCTTATAAAATAAAATATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGTCCCCCATATCTTCTCAACATCTTATAAAATAAAATATACT  650

seq1  GCTTACATGTCAAAATAATTGTGATCAATGCAGAATAAAATGTCACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATGTCAAAATAATTGTGATCAATGCAGAATAAAATGTCACTTTG  700

seq1  TAGTACTTGAGACCTAATATTACACGTAAACATCTGAATAACTGCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTGAGACCTAATATTACACGTAAACATCTGAATAACTGCATCCA  750

seq1  TTAGTAACATACAGTGTGTGAGACCCTGAATTCAGTGCTGAAAATCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACATACAGTGTGTGAGACCCTGAATTCAGTGCTGAAAATCTGTC  800

seq1  AAGCAGGTCACTCCTTTTAAGTTATTGATTAATTTCAAGATACTTAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTCACTCCTTTTAAGTTATTGATTAATTTCAAGATACTTAAGTC  850

seq1  CACAATCTTCTCCTCCACTTTCCTTTCAGTCACTGCATATGCATGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTTCTCCTCCACTTTCCTTTCAGTCACTGCATATGCATGAGAAA  900

seq1  TAAGAATTCTGTTTTATCTCATATTCATAATAGAATCTTGAGAAACCACA  950
      | |||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  T-AGAATTCTGTTTTATCTCATATTCATAATAGAATCTTGAG-AACCAC-  947

seq1  AATCCAACCCAAGGGTCAGTAAACAACAACCACTATTCGTAGCTGGAGAA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATCCAACCCAAGGGTCAGTAAACAAC-ACCACTATTCGTAGCTGGAGAA  996

seq1  AATTCTGGAACCAGAGACTACTAATGGGCAAGTAGATAAACCACAGTTAT  1050
      |||||||||||||||||||||| |||| || |||||| ||||||||||||
seq2  AATTCTGGAACCAGAGACTACT-ATGGCCAGGTAGAT-AACCACAGTTAT  1044

seq1  ATTTCCTTTAACTATCACATTTTAGAAACTGAACAATTTTAT-GAAGCAC  1099
      |||| ||||| |||||||| ||||||||||| |||  ||||| |||||||
seq2  ATTT-CTTTACCTATCACA-TTTAGAAACTG-ACA--TTTATGGAAGCAC  1089

seq1  ATCTAATTTTGCTTGAAGATAAAATTTAATCTGTCAAAATGGATTTACCA  1149
      |||||  |||||||| |||||||   | |||||||||| |||| ||||||
seq2  ATCTA--TTTGCTTGGAGATAAA--CTCATCTGTCAAATTGGA-TTACCA  1134


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