BAC Information

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BAC

Clone NameB6Ng01-208C11
Chromosome8 (Build37)
Map Location 107,941,377 - 108,078,745
singlet/doubletdoublet
Overlap geneLrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1
Upstream geneDync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
Downstream geneAgrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C11.bB6Ng01-208C11.g
ACCGA027107GA027108
length1,068854
definitionB6Ng01-208C11.b B6Ng01-208C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,941,377 - 107,942,432)(108,077,895 - 108,078,745)
sequence
gaattctttgcctgcatgtgtgtctgtgcaccatatgtgtgcctagttcc
agaggaagcccaaagaaggcattggatcccctagaattgaagttagctgt
catggatgctgagaattgaacttgggtcctctggaacactagttagtgct
cttaatcatggaaccatatccccaacccctattctattgttaatctatat
gatagtgctgtgtttgatttgttctttgatctatgtgtagttaacacttt
ataagtgctggagccaaacgcacatgttcttagcagtctgcacctcacag
tttatttgttgaatgatgatcctggggtcccgttgtctgttcttcaaatg
aggccgcagtgaaaaccacgagaaatcccacacatcactggtggaaccac
taattgccctcagcctttctcgcaatagcagaatcttagggtattagatt
atcatgaataaagttaccaagacactgttgtcaaagtcaggacattttaa
aaaagatattcgcatgctattaaattcaaggtcctctagaacatttgcag
agttgtataactgttctagtttgcttatgattgttgtgataaaatattct
agccaatgtatcttaggaaaggattttctttgacttatactttccaggtc
acaattcgtcattgagggaactggaggcaggatttgtggagaaactctgc
ttgctgactcacttttttgcctcactagctttcttactcggccaagttca
ccctgcctagaccctcctatagcaattaacaatcaagaaaaccctccaca
gacttgccacaggccagtctgatctaggcaaaaattaaactgaggctatc
ttcaaatgaacagttagtgctaactaggggcaacaatcacttctgctatc
tagcccagaatgttttcattggacctctttagaaatcgccgtaatttccc
acttcccatagccgctggcaatcacatatttaccaccttttcattagccg
ctgggcaatcacttatttcccacctttccatagccgctggcaaatcaaca
tatttccacctttccata
gaattcactttgtagaccaggctagcctcaaactcagaaatttgcctgcc
tctgccttccaagtgctaggaataaaggtgtgtgccaccactcccggcct
ttattcattttcttaaaaatgtgtatgactgttttacctgcatgtatgta
tgtatgtacatatatgtaccgtgtacatacatggtcaaaagagagcattg
gatttcattgaactgtagttaggtatggttagaacccatcatatatgtgc
taggaattgagtttgggtcctttacaagttcaagtgtgagtttgggtcct
ttacaagttcaagtgctttaagctgctctccagcccccctaaatttccat
tgtttatgatacatgtctgcacctctctgcaggtgtcagcagtttcacac
ctgcagggtctgatggttgggggagatggagacctacagtctgaggcatg
atgacattggaagaatgtgttgagtgagaactggagatggaacaccctct
tcttgccaagagccaaccccctcatggttgtccataaaccatcattcctt
tgtccacaagagggtgcactaggaccactctgccactaagagcctggatg
gaggtgcagcatggttctgctgtacctgtctatggctggtgtcctttagg
gttctgtcctgggctcttctgtcactgagtccacagttagcctcccagat
tagtatagggtttagtgttttcctgtttgttttctttctactcttttccc
tctgtgtcccatatttccaagcataggaagaagaccaaggacattctctg
atatcattctctgtcctgaagcctgttacaggatgctctggaccgtgact
aata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107941377_107942432
seq2: B6Ng01-208C11.b_42_1109

seq1  GAATTCTTTGCCTGCATGTGTGTCTGTGCACCATATGTGTGCCTAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCTGCATGTGTGTCTGTGCACCATATGTGTGCCTAGTTCC  50

seq1  AGAGGAAGCCCAAAGAAGGCATTGGATCCCCTAGAATTGAAGTTAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCCCAAAGAAGGCATTGGATCCCCTAGAATTGAAGTTAGCTGT  100

seq1  CATGGATGCTGAGAATTGAACTTGGGTCCTCTGGAACACTAGTTAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGCTGAGAATTGAACTTGGGTCCTCTGGAACACTAGTTAGTGCT  150

seq1  CTTAATCATGGAACCATATCCCCAACCCCTATTCTATTGTTAATCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCATGGAACCATATCCCCAACCCCTATTCTATTGTTAATCTATAT  200

seq1  GATAGTGCTGTGTTTGATTTGTTCTTTGATCTATGTGTAGTTAACACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCTGTGTTTGATTTGTTCTTTGATCTATGTGTAGTTAACACTTT  250

seq1  ATAAGTGCTGGAGCCAAACGCACATGTTCTTAGCAGTCTGCACCTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCTGGAGCCAAACGCACATGTTCTTAGCAGTCTGCACCTCACAG  300

seq1  TTTATTTGTTGAATGATGATCCTGGGGTCCCGTTGTCTGTTCTTCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTGAATGATGATCCTGGGGTCCCGTTGTCTGTTCTTCAAATG  350

seq1  AGGCCGCAGTGAAAACCACGAGAAATCCCACACATCACTGGTGGAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGCAGTGAAAACCACGAGAAATCCCACACATCACTGGTGGAACCAC  400

seq1  TAATTGCCCTCAGCCTTTCTCGCAATAGCAGAATCTTAGGGTATTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCCTCAGCCTTTCTCGCAATAGCAGAATCTTAGGGTATTAGATT  450

seq1  ATCATGAATAAAGTTACCAAGACACTGTTGTCAAAGTCAGGACATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATAAAGTTACCAAGACACTGTTGTCAAAGTCAGGACATTTTAA  500

seq1  AAAAGATATTCGCATGCTATTAAATTCAAGGTCCTCTAGAACATTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTCGCATGCTATTAAATTCAAGGTCCTCTAGAACATTTGCAG  550

seq1  AGTTGTATAACTGTTCTAGTTTGCTTATGATTGTTGTGATAAAATATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATAACTGTTCTAGTTTGCTTATGATTGTTGTGATAAAATATTCT  600

seq1  AGCCAATGTATCTTAGGAAAGGA-TTTCTTTGACTTATAC-TTCCAGGTC  648
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  AGCCAATGTATCTTAGGAAAGGATTTTCTTTGACTTATACTTTCCAGGTC  650

seq1  ACAATTCGTCATTGAGGGAACTGGAGGCAGGATTTGTGGAGAAACTCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCGTCATTGAGGGAACTGGAGGCAGGATTTGTGGAGAAACTCTGC  700

seq1  TTGCTGACTCAC-TTTTTGCCTCACTAGCTTTCTTACTCGGCCAAGTTCA  747
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACTCACTTTTTTGCCTCACTAGCTTTCTTACTCGGCCAAGTTCA  750

seq1  CCCTGCCTAGACCCTCCTATAGCAATTAACAATCAAGAAAACCCTCCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTAGACCCTCCTATAGCAATTAACAATCAAGAAAACCCTCCACA  800

seq1  GACTTGCCACAGGCCAGTCTGATCTAGGCAAAAATTAAACTGAGGCTATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCACAGGCCAGTCTGATCTAGGCAAAAATTAAACTGAGGCTATC  850

seq1  TTCAAATGAACAGTTAGTGCTAACTA-GGGCAACAATCACTTCTGCTATC  896
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAAATGAACAGTTAGTGCTAACTAGGGGCAACAATCACTTCTGCTATC  900

seq1  TAGCCCAGAATGTTTTCA-TGGACCTCTTAGAAAATCGCCGT-ATTTCCC  944
      |||||||||||||||||| ||||||||||   |||||||||| |||||||
seq2  TAGCCCAGAATGTTTTCATTGGACCTCTTTAGAAATCGCCGTAATTTCCC  950

seq1  ACTTCCCATAGCCGCTGGCAATCACATATTTCCCAC--TTTCCATAGCCG  992
      ||||||||||||||||||||||||||||||| ||||  ||||  ||||||
seq2  ACTTCCCATAGCCGCTGGCAATCACATATTTACCACCTTTTCATTAGCCG  1000

seq1  CT-GGCAATCACTTATTTCCCA-CTTTCCATAGCCGCTGGC-AATC-ACA  1038
      || ||||||||||||||||||| |||||||||||||||||| |||| |||
seq2  CTGGGCAATCACTTATTTCCCACCTTTCCATAGCCGCTGGCAAATCAACA  1050

seq1  TATTTCCCACTTTCCATA  1056
      |||||||  |||||||||
seq2  TATTTCCACCTTTCCATA  1068

seq1: chr8_108077895_108078745
seq2: B6Ng01-208C11.g_68_921 (reverse)

seq1  TATTAGTCACGGT-CAGAGCATCCTGTACCAGGCTTCAGGACAGAGAATG  49
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TATTAGTCACGGTCCAGAGCATCCTGTAACAGGCTTCAGGACAGAGAATG  50

seq1  ATATCAGAGAATGTCCTTGGTCTTCTTCCTATGCTTGG-AATATGGGACA  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATCAGAGAATGTCCTTGGTCTTCTTCCTATGCTTGGAAATATGGGACA  100

seq1  CAGAGGGAAAAGAGTAGAAAG-AAACAAACAGG-AAACACTAAACCCTAT  146
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  CAGAGGGAAAAGAGTAGAAAGAAAACAAACAGGAAAACACTAAACCCTAT  150

seq1  ACCTAATCTGGGAGGCTAACTGTGGACTCAGTGACAGAAGAGCCCAGGAC  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CTAATCTGGGAGGCTAACTGTGGACTCAGTGACAGAAGAGCCCAGGAC  199

seq1  AGAACCCTAAAGGACACCAGCCATAGACAGGTACAGCAGAACCATGCTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTAAAGGACACCAGCCATAGACAGGTACAGCAGAACCATGCTGC  249

seq1  ACCTCCATCCAGGCTCTTAGTGGCAGAGTGGTCCTAGTGCACCCTCTTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATCCAGGCTCTTAGTGGCAGAGTGGTCCTAGTGCACCCTCTTGT  299

seq1  GGACAAAGGAATGATGGTTTATGGACAACCATGAGGGGGTTGGCTCTTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGGAATGATGGTTTATGGACAACCATGAGGGGGTTGGCTCTTGG  349

seq1  CAAGAAGAGGGTGTTCCATCTCCAGTTCTCACTCAACACATTCTTCCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAGGGTGTTCCATCTCCAGTTCTCACTCAACACATTCTTCCAAT  399

seq1  GTCATCATGCCTCAGACTCTAGGTCTCCATCTCCCCCAACCATCAGACCC  446
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCATCATGCCTCAGACTGTAGGTCTCCATCTCCCCCAACCATCAGACCC  449

seq1  TGCAGGTGTGAAACTGCTGACACCTGCAGAGAGGTGCAGACATGTATCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTGAAACTGCTGACACCTGCAGAGAGGTGCAGACATGTATCAT  499

seq1  AAACAATGGAAATTTAGGGGGGCTGGAGAGCAGCTTAAAGCACTTGAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGGAAATTTAGGGGGGCTGGAGAGCAGCTTAAAGCACTTGAACT  549

seq1  TGTAAAGGACCCAAACTCACACTTGAACTTGTAAAGGACCCAAACTCAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGACCCAAACTCACACTTGAACTTGTAAAGGACCCAAACTCAAT  599

seq1  TCCTAGCACATATATGATGGGTTCTAACCATACCTAACTACAGTTCAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCACATATATGATGGGTTCTAACCATACCTAACTACAGTTCAATG  649

seq1  AAATCCAATGCTCTCTTTTGACCATGTATGTACACGGTACATATATGTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATGCTCTCTTTTGACCATGTATGTACACGGTACATATATGTAC  699

seq1  ATACATACATACATGCAGGTAAAACAGTCATACACATTTTTAAGAAAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATGCAGGTAAAACAGTCATACACATTTTTAAGAAAATG  749

seq1  AATAAAGGCCGGGAGTGGTGGCACACACCTTTATTCCTAGCACTTGGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGCCGGGAGTGGTGGCACACACCTTTATTCCTAGCACTTGGAAG  799

seq1  GCAGAGGCAGGCAAATTTCTGAGTTTGAGGCTAGCCTGGTCTACAAAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCAAATTTCTGAGTTTGAGGCTAGCCTGGTCTACAAAGTG  849

seq1  AATTC  851
      |||||
seq2  AATTC  854