BAC Information

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BAC

Clone NameB6Ng01-208J03
Chromosome8 (Build37)
Map Location 60,315,219 - 60,443,410
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208J03.bB6Ng01-208J03.g
ACCGA027416GA027417
length9531,148
definitionB6Ng01-208J03.b B6Ng01-208J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,442,821 - 60,443,410)(60,315,219 - 60,316,343)
sequence
gaattcttttcctggaagttcttctaggcaattttcattgcatgtcagta
ttataagatggatggtttgtggaagtcttggtttctcaggttgtctccat
ctctggaatacttattctggttagagatatgcagaaaaagattgaaaggt
aaaaataaataaataatagcatactgcattctaaaacatgtttggtgact
attaggctacacttgtcagaaattccagaaaaatcctcacggtatctttc
ttaattaggacggccattgctataatgaagcaccatgagcaaaagcaact
tgtggaggaaagaatttatttcacccatatttccatatgacagttcatca
tcaaactcagtaagggaaggaactcaagcagggcagaaaattggaggcag
gagctgatccagaggccatggatgggtgctgtttactggcttgttctcca
tggtttgctcaggctgctttcttatacaacccaagaccacagtccaaggt
tgcaccatccacaatgcactgggcccttccccatcaatcactacttaaga
aaatgccctagagccaaacattagatggagctcttctgagaatttgcaga
accagctcttgtggacgagttggggaagtgattgacagacccatagaaga
agaccaatagagtcaactaacctggacccttgggggctcccaaagactaa
gtcaccagccaaagagcatgcatgggctggacctagcccctacatcccca
acacacaacatatatagcagatgtgtagcttggtcttcatactgccccaa
acagtgggagcaggggctgtccttgactctaatgcctgcctgtggatcct
gcttccctaactgggccaccttgtctggcctcagtggggtaagaaggacc
tagtcctaaatagcttgatatgccaggttgatggtactcgggacatcccc
ttc

gaattctcttacaaaggcaggtttaattgctaggctaaatccaccccatt
ggactcagtcgttactttcatgcactcttttctagagggaaaaagctacc
gcaatagtagtgaatgaacagagcagaggaataatgcattttattcccaa
agatggacgttttaaatctggggcccgaggctatccggatctttccactt
gagatcatgaagtaaaatcaggtcagagtgttgaataggagaacggatag
tgctcatttaaggaaccagtgtggctcccacgtgccttgccttccgtcct
gatggagcagggtacaccctaggtaggaaattagcctcgctcaccggtgc
ttcgtccttgcatatataaatagctataaggctgatgacagtgagggcca
ttctcacatccgatgacaagttgtatcatatcagatacatgatcaggctt
agttacaagatcttgctttcagtttctatgagctcccgtgggctcttctg
ccaatctcaagttaaactctttttgaggcatattaaaaaaatccatatga
agcaccagcagcattcaataattcttggatgggatattgacgctggctag
cacgttctgaaaggaagttaggcactcacttctcagggatgttttaaatt
agcctgctgggctgatggagaaaagagggaggtttggcagggtttagctg
tccctccccacctgggaggctgtgggggatggacagactcttgcgggcag
ggcaggtctcctcacctcaccccacgctgcaggcaggggctcgaccggga
gggtagtacttaggcacgtcccaggccacagcagccatgaaccacttgaa
gtctttgcacttgagtcgcttccgcaactccttctgggcagagattgtct
ccggtggagaggtgcctgttacttctgggccgcctcctggtaaatgttac
ttcagcaaaattcatccatcccaggtctcagccacaacgcttcatgttct
tgtacagcagagaacaggaaagaaaataggacatatcaaatcaaaacatc
agttatttatgggttttctacgccccaatggatcactttaacttgcatcc
agaaaccggagaaccaagtatctggcagggcagccacttgactgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60442821_60443410
seq2: B6Ng01-208J03.b_44_633 (reverse)

seq1  CTCAGAAGAGCTCCATCTAATGTTTGGCTCTAGGGCATTTTCTTAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGAGCTCCATCTAATGTTTGGCTCTAGGGCATTTTCTTAAGTAG  50

seq1  TGATTGATGGGGAAGGGCCCAGTGCATTGTGGATGGTGCAACCTTGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGGGGAAGGGCCCAGTGCATTGTGGATGGTGCAACCTTGGACT  100

seq1  GTGGTCTTGGGTTGTATAAGAAAGCAGCCTGAGCAAACCATGGAGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTGGGTTGTATAAGAAAGCAGCCTGAGCAAACCATGGAGAACAA  150

seq1  GCCAGTAAACAGCACCCATCCATGGCCTCTGGATCAGCTCCTGCCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAACAGCACCCATCCATGGCCTCTGGATCAGCTCCTGCCTCCAA  200

seq1  TTTTCTGCCCTGCTTGAGTTCCTTCCCTTACTGAGTTTGATGATGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCCTGCTTGAGTTCCTTCCCTTACTGAGTTTGATGATGAACTG  250

seq1  TCATATGGAAATATGGGTGAAATAAATTCTTTCCTCCACAAGTTGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGAAATATGGGTGAAATAAATTCTTTCCTCCACAAGTTGCTTTT  300

seq1  GCTCATGGTGCTTCATTATAGCAATGGCCGTCCTAATTAAGAAAGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTGCTTCATTATAGCAATGGCCGTCCTAATTAAGAAAGATACC  350

seq1  GTGAGGATTTTTCTGGAATTTCTGACAAGTGTAGCCTAATAGTCACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATTTTTCTGGAATTTCTGACAAGTGTAGCCTAATAGTCACCAAA  400

seq1  CATGTTTTAGAATGCAGTATGCTATTATTTATTTATTTTTACCTTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTAGAATGCAGTATGCTATTATTTATTTATTTTTACCTTTCAAT  450

seq1  CTTTTTCTGCATATCTCTAACCAGAATAAGTATTCCAGAGATGGAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGCATATCTCTAACCAGAATAAGTATTCCAGAGATGGAGACAA  500

seq1  CCTGAGAAACCAAGACTTCCACAAACCATCCATCTTATAATACTGACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAACCAAGACTTCCACAAACCATCCATCTTATAATACTGACATG  550

seq1  CAATGAAAATTGCCTAGAAGAACTTCCAGGAAAAGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAATTGCCTAGAAGAACTTCCAGGAAAAGAATTC  590


seq1: chr8_60315219_60316343
seq2: B6Ng01-208J03.g_65_1212

seq1  GAATTCTCTTACAAAGGCAGGTTTAATTGCTAGGCTAAATCCACCCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACAAAGGCAGGTTTAATTGCTAGGCTAAATCCACCCCATT  50

seq1  GGACTCAGTCGTTACTTTCATGCACTCTTTTCTAGAGGGAAAAAGCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGTCGTTACTTTCATGCACTCTTTTCTAGAGGGAAAAAGCTACC  100

seq1  GCAATAGTAGTGAATGAACAGAGCAGAGGAATAATGCATTTTATTCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTAGTGAATGAACAGAGCAGAGGAATAATGCATTTTATTCCCAA  150

seq1  AGATGGACGTTTTAAATCTGGGGCCCGAGGCTATCCGGATCTTTCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACGTTTTAAATCTGGGGCCCGAGGCTATCCGGATCTTTCCACTT  200

seq1  GAGATCATGAAGTAAAATCAGGTCAGAGTGTTGAATAGGAGAACGGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGAAGTAAAATCAGGTCAGAGTGTTGAATAGGAGAACGGATAG  250

seq1  TGCTCATTTAAGGAACCAGTGTGGCTCCCACGTGCCTTGCCTTCCGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTAAGGAACCAGTGTGGCTCCCACGTGCCTTGCCTTCCGTCCT  300

seq1  GATGGAGCAGGGTACACCCTAGGTAGGAAATTAGCCTCGCTCACCGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCAGGGTACACCCTAGGTAGGAAATTAGCCTCGCTCACCGGTGC  350

seq1  TTCGTCCTTGCATATATAAATAGCTATAAGGCTGATGACAGTGAGGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCCTTGCATATATAAATAGCTATAAGGCTGATGACAGTGAGGGCCA  400

seq1  TTCTCACATCCGATGACAAGTTGTATCATATCAGATACATGATCAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACATCCGATGACAAGTTGTATCATATCAGATACATGATCAGGCTT  450

seq1  AGTTACAAGATCTTGCTTTCAGTTTCTATGAGCTCCCGTGGGCTCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAGATCTTGCTTTCAGTTTCTATGAGCTCCCGTGGGCTCTTCTG  500

seq1  CCAATCTCAAGTTAAACTCTTTTTGAGGCATATTAAAAAAATCCATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCAAGTTAAACTCTTTTTGAGGCATATTAAAAAAATCCATATGA  550

seq1  AGCACCAGCAGCATTCAATAATTCTTGGATGGGATATTGACGCTGGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCAGCATTCAATAATTCTTGGATGGGATATTGACGCTGGCTAG  600

seq1  CACGTTCTGAAAGGAAGTTAGGCACTCACTTCTCAGGGATGTTTTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCTGAAAGGAAGTTAGGCACTCACTTCTCAGGGATGTTTTAAATT  650

seq1  AGCCTGCTGGGCTGATGGAGAAAAGAGGGAGGTTTGGCAGGGTTTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGGGCTGATGGAGAAAAGAGGGAGGTTTGGCAGGGTTTAGCTG  700

seq1  TCCCTCCCCACCTGGGAGGCTGTGGGGGATGGACAGACTCTTGCGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCACCTGGGAGGCTGTGGGGGATGGACAGACTCTTGCGGGCAG  750

seq1  GGCAGGTCTCCTCACCTCACCCCACGCTGCAGGCAGGGGCTCGACC-GGA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCAGGTCTCCTCACCTCACCCCACGCTGCAGGCAGGGGCTCGACCGGGA  800

seq1  GGGTAGTACTTAGGCACGTCCCAGGCCACAGCAGCCATGAACCACTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTACTTAGGCACGTCCCAGGCCACAGCAGCCATGAACCACTTGAA  850

seq1  GTCTTTGCACTTGAGTCGCTTCCGCAACTCCTTCTGGGCAGAGA-TGTCT  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCTTTGCACTTGAGTCGCTTCCGCAACTCCTTCTGGGCAGAGATTGTCT  900

seq1  CCGGTGGAGAGGTGCCTG-TAC-TCT-GGCCGCCT-CTGGTAAATG-TAC  943
      |||||||||||||||||| ||| ||| |||||||| |||||||||| |||
seq2  CCGGTGGAGAGGTGCCTGTTACTTCTGGGCCGCCTCCTGGTAAATGTTAC  950

seq1  -TCAGC-AAATTCATCCAT-CCAGGTCTCAGCCAC-ACGCTTCAGGTTC-  988
       ||||| |||||||||||| ||||||||||||||| |||||||| |||| 
seq2  TTCAGCAAAATTCATCCATCCCAGGTCTCAGCCACAACGCTTCATGTTCT  1000

seq1  TGTACAGCAGAG-ACAAGAAAGAAAA-AAGACA-AACAAAACAAAACATC  1035
      |||||||||||| ||| ||||||||| | |||| | |||| |||||||||
seq2  TGTACAGCAGAGAACAGGAAAGAAAATAGGACATATCAAATCAAAACATC  1050

seq1  AAGTTATTTATTGG-TTTCTACG-CCCAAAGGATCACTTT-ACTTGCAT-  1081
       |||||||||| || |||||||| ||||| |||||||||| |||||||| 
seq2  -AGTTATTTATGGGTTTTCTACGCCCCAATGGATCACTTTAACTTGCATC  1099

seq1  CAGAAA-CGGAGAACCAGGTATCT-GCA-GGCAG-CAC-TGGCTGATGG  1125
      |||||| |||||||||| |||||| ||| ||||| ||| || |||||||
seq2  CAGAAACCGGAGAACCAAGTATCTGGCAGGGCAGCCACTTGACTGATGG  1148


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