BAC Information

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BAC

Clone NameB6Ng01-209G24
Chromosome8 (Build37)
Map Location 102,603,827 - 102,735,076
singlet/doubletdoublet
Overlap geneLOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209G24.bB6Ng01-209G24.g
ACCGA028054GA028055
length973974
definitionB6Ng01-209G24.b B6Ng01-209G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,603,827 - 102,604,460)(102,734,114 - 102,735,076)
sequence
gaattccaaacctcacacaatttcaaaaaattctcagtagctgtcaaaat
caaacttctgctggagcatgaggcaaatcctagtcagctgctaaggacag
tccaaggaagcaccatattcaacacgggatcagaatgaaaatattttcta
atattataatatttccccattttttcaaaaacatgaaaaagtaaaatcca
caattgtgatgacagtctatcccttgagaatttcttcttacctaccctcc
ctgtgtttgtagattatagcatgattatcaattcctttatagctagtatt
cacttataaataaacatatgcattgcccttctgggtctggtatacctcat
gcaggatgactttttttctagttccatacatgtttctacaaatttcaaga
tatatttttaaacagctgagtagtaccacattgtgtaaactttccacatt
attacttactctttgttttaggaacatttaggttgttttcagtttctggc
tattacaaataaagctactatgaacataattgagcaattgtcctggtgat
agtatgttgtattctttgggtataggcctaggagtgtggcatagctcagt
cttgagttagattgattcccaattttctgagaaactgtcatattgatttt
caatatgttatataagtttacactcctatcagcaatggaggaatgttcca
cttgctccatatattctgcctgcattatcattcatttgtgtttttggtct
tagccattctgacaactgtaagattaaatcccacagtctttttgatttgc
atttccttgatggctaaagatatttgaatattgataatttattcttatgt
tctgaagaggtccttgattcctgctgtttggagaaacacacacatacgaa
taggaaagaaagaaaggaaaggaaagaaagaaaggaaagaaaggaaagag
agaatgaatgagaggagagaaag

gaattcattccccacatcagatactgttgccacatatagagctggcttcc
cattcacagcagaatgaatagactgaagtatattatgccctttgaccctc
ccctcccaataaaattgtatgtgcatggtagtggtggggactttacagat
ggacctggtattcatgtttacaatgttgaaatcaacaaaatccctgtcat
tatagtgaagaatcagatagaaaggtttttcaattttctttttatgctaa
gtaaacacctatgggtacacaaatatcctggcttctttttttgctcatat
tttataggcttccaccaaatcaaagtagagcctatgtagaagaaaaaaaa
atcccccaaaactagaacatgaatacaggtaaacctctgtaggaaattgg
accttgcaggtattataaagttctgggttctaaaaatggaaaaatgaacc
tggattattcagttgaacctgatgagctcatagggggtcttagaaatggg
agaaaagaagttgagagtaagagatgatgaagaagcagggatgacagaca
tttggatacactgaacagccatgaagatggaaaagactggccaaccaaga
gaccaggagagagctggcggtcattaggagacaggaaggttgacaacttg
tcccaaagtgcttcccaaaagaagggagctaagtcaacactttgttggtg
gcaaatctctataacagtaagataataaattcagattgttttctaggttc
cgtgtttatttgttacagaattaatggaagtgtatattgttctctatctc
tgaagattgaatgcccattccctaaagaagtctaagaatactaagactta
gattcaaacaatcaaaactctgtgtattaagggccattaagtgaatttta
acacacttacatggaaagatctacacaaggaaaagattttataggttttt
gggttgccatggttgattattaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102603827_102604460
seq2: B6Ng01-209G24.b_378_1018

seq1  GGGTCTGGTATACCTCATGCAGGATGACTTTTTTTCTAGTTCCATACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGTATACCTCATGCAGGATGACTTTTTTTCTAGTTCCATACATG  50

seq1  TTTCTACAAATTTCAAGATATATTTTTAAACAGCTGAGTAGTACCACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAAATTTCAAGATATATTTTTAAACAGCTGAGTAGTACCACATT  100

seq1  GTGTAAACTTTCCACATTATTACTTACTCTTTGTTTTAGGAACATTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACTTTCCACATTATTACTTACTCTTTGTTTTAGGAACATTTAGG  150

seq1  TTGTTTTCAGTTTCTGGCTATTACAAATAAAGCTACTATGAACATAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGTTTCTGGCTATTACAAATAAAGCTACTATGAACATAATTG  200

seq1  AGCAATTGTCCTGGTGATAGTATGTTGTATTCTTTGGGTATAGGCCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTCCTGGTGATAGTATGTTGTATTCTTTGGGTATAGGCCTAGG  250

seq1  AGTGTGGCATAGCTCAGTCTTGAGTTAGATTGATTCCCAATTTTCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCATAGCTCAGTCTTGAGTTAGATTGATTCCCAATTTTCTGAGA  300

seq1  AACTGTCATATTGATTTTCAATATGTTATATAAGTTTACACTCCTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCATATTGATTTTCAATATGTTATATAAGTTTACACTCCTATCAG  350

seq1  CAATGGAGGAATGTTCCACTTGCTCCATATATTCTGCCTGCATTATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAATGTTCCACTTGCTCCATATATTCTGCCTGCATTATCATT  400

seq1  CATTTGTGTTTTTGGTCTTAGCCATTCTGACAACTGTAAGATTAAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTTTTTGGTCTTAGCCATTCTGACAACTGTAAGATTAAATCCC  450

seq1  ACAGTCTTTTTGATTTGCATTTCCTTGATGGCTAAAGATA-TTGAATATT  499
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGTCTTTTTGATTTGCATTTCCTTGATGGCTAAAGATATTTGAATATT  500

seq1  GATAATTTATTCTTATGTTCTGAAGAGGTCC-TGATTCCTGCTGTTTGGA  548
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATAATTTATTCTTATGTTCTGAAGAGGTCCTTGATTCCTGCTGTTTGGA  550

seq1  GAAACACACACATACGAATAAGAAAGAAAGAAAG--AAAGAAAGAAAGAA  596
      |||||||||||||||||||| |||||||||||||  || |||||||||||
seq2  GAAACACACACATACGAATAGGAAAGAAAGAAAGGAAAGGAAAGAAAGAA  600

seq1  A-GAAAGAAA-GAAAGAGAGAAAGAAAGAGA-GAGAGAAAG  634
      | |||||||| ||||||||||| ||| |||| |||||||||
seq2  AGGAAAGAAAGGAAAGAGAGAATGAATGAGAGGAGAGAAAG  641


seq1: chr8_102734114_102735076
seq2: B6Ng01-209G24.g_66_1039 (reverse)

seq1  TTTAATAATC-ACCATGGCAA-CCAAAAACCTAT-AAATC-TTTCTTTGT  46
      | |||||||| |||||||||| |||||||||||| ||||| |||| ||||
seq2  TGTAATAATCAACCATGGCAACCCAAAAACCTATAAAATCTTTTCCTTGT  50

seq1  GTAG-TCTTTCCATGT-AGTGTGTT-AAATTCACTTAATTGCCC-TAATA  92
      |||| ||||||||||| |||||||| ||||||||||||| |||| |||||
seq2  GTAGATCTTTCCATGTAAGTGTGTTAAAATTCACTTAATGGCCCTTAATA  100

seq1  CACAGAGTTTTGATTGTTTGAATCTAAGTCTTAGTA-TCTTAGACTTCTT  141
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACAGAGTTTTGATTGTTTGAATCTAAGTCTTAGTATTCTTAGACTTCTT  150

seq1  TAGGGAAT-GGCATTCAATCTTCAGAGATAGAGAACAATATACACTTCCA  190
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAATGGGCATTCAATCTTCAGAGATAGAGAACAATATACACTTCCA  200

seq1  TTAATTCTGTAACAAATAAACACGGAACCTAGAAAACAATCTGAATTTAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGTAACAAATAAACACGGAACCTAGAAAACAATCTGAATTTAT  250

seq1  TATCTTACTGTTATAGAGATTTGCCACCAACAAAGTGTTGACTTAGCTCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACTGTTATAGAGATTTGCCACCAACAAAGTGTTGACTTAGCTCC  300

seq1  CTTCTTTTGGGAAGCAC-TTGGGACAAGTTGTCAACCTTCCTGTCTCCTA  339
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGGGAAGCACTTTGGGACAAGTTGTCAACCTTCCTGTCTCCTA  350

seq1  ATGACCGCCAGCTCTCTCCTGGTCTCTTGGTTGGCCAGTCTTTTCCATCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCGCCAGCTCTCTCCTGGTCTCTTGGTTGGCCAGTCTTTTCCATCT  400

seq1  TCATGGCTGTTCAGTGTATCCAAATGTCTGTCATCCCTGCTTCTTCATCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGTTCAGTGTATCCAAATGTCTGTCATCCCTGCTTCTTCATCA  450

seq1  TCTCTTACTCTCAACTTCTTTTCTCCCATTTCTAAGACCCCCTATGAGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACTCTCAACTTCTTTTCTCCCATTTCTAAGACCCCCTATGAGCT  500

seq1  CATCAGGTTCAACTGAATAATCCAGGTTCATTTTTCCATTTTTAGAACCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTTCAACTGAATAATCCAGGTTCATTTTTCCATTTTTAGAACCC  550

seq1  AGAACTTTATAATACCTGCAAGGTCCAATTTCCTACAGAGGTTTACCTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTATAATACCTGCAAGGTCCAATTTCCTACAGAGGTTTACCTGT  600

seq1  ATTCATGTTCTAGTTTTGGGGGATTTTTTTTTCTTCTACATAGGCTCTAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTCTAGTTTTGGGGGATTTTTTTTTCTTCTACATAGGCTCTAC  650

seq1  TTTGATTTGGTGGAAGCCTATAAAATATGAGCAAAAAAAGAAGCCAGGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGGTGGAAGCCTATAAAATATGAGCAAAAAAAGAAGCCAGGAT  700

seq1  ATTTGTGTACCCATAGGTGTTTACTTAGCATAAAAAGAAAATTGAAAAAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTACCCATAGGTGTTTACTTAGCATAAAAAGAAAATTGAAAAAC  750

seq1  CTTTCTATCTGATTCTTCACTATAATGACAGGGATTTTGTTGATTTCAAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCTGATTCTTCACTATAATGACAGGGATTTTGTTGATTTCAAC  800

seq1  ATTGTAAACATGAATACCAGGTCCATCTGTAAAGTCCCCACCACTACCAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAACATGAATACCAGGTCCATCTGTAAAGTCCCCACCACTACCAT  850

seq1  GCACATACAATTTTATTGGGAGGGGAGGGTCAAAGGGCATAATATACTTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACAATTTTATTGGGAGGGGAGGGTCAAAGGGCATAATATACTTC  900

seq1  AGTCTATTCATTCTGCTGTGAATGGGAAGCCAGCTCTATATGTGGCAACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTCATTCTGCTGTGAATGGGAAGCCAGCTCTATATGTGGCAACA  950

seq1  GTATCTGATGTGGGGAATGAATTC  963
      ||||||||||||||||||||||||
seq2  GTATCTGATGTGGGGAATGAATTC  974


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