BAC Information

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BAC

Clone NameB6Ng01-209I18
Chromosome8 (Build37)
Map Location 124,746,013 - 124,903,194
singlet/doubletdoublet
Overlap geneGm22, Zfpm1, Trhr2, 5830416A07Rik
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
Downstream geneIl17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209I18.bB6Ng01-209I18.g
ACCGA028136GA028137
length818980
definitionB6Ng01-209I18.b B6Ng01-209I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,746,013 - 124,746,825)(124,902,223 - 124,903,194)
sequence
gaattctacaaatgaagaggctggagtccctaagggaaaaatgcaacttg
tccaagttgcacagcggcagcagtcggggctgcctcttgccctggacgct
gttgcacagacgccctttaggggtgtttcctcttgtgatgagcctgtgga
tacaggcgcggggagtgacgaaagcgcgggcacaggagagcagcaaatgg
gaacagtgttgggttcgccatgaagacagggtgctgagctacccctgtgg
ggcatgcagggtgacatgcagaggccatgttggggttctggcctaaaagc
atacaaagccccttcagggaacaaaccctgtctatgccccgcccccaccc
ccagcatcttttcttccctaggcctcattttccatgtttgtggtatataa
agcccagagcaatctgcatccctgggacttcaggcactgctgtcctcacg
actctacctatgacatgtgcgctctaggttaagctcagagggcttcctgg
aggcgcaggcttcctgagaaggttttaaaggagagaaaaagcttccagtg
tccaagatgagagcattgcaggtcagggagggtagtgtgatggacgggag
ggtggatcccatctgtcttcatgtccaagcctctgcagtggagcagacag
tgggggcccaccacccagggtccagcagaggagggagggagcagcgtgag
gaggtggcctgtgagggtcttgaagaataaatgaagatttccccagctgg
cagaaggctgcagttgggaggaacttttcatgaaaggggaagatcagaat
cctgagtcagagggagta
gaattcctctctaagttaggaatcttgtttcttgcactgtgcattactct
gtccatctaactgcagcacacaaactccaatagtttgtttgaaggctgtt
ataagttgggatcttgtttccaaaagcccatactgggaaatcagtagagg
gactgatctccagccatgctccaaaaaggtccactgtctctctaggtatc
agtattctctgttaagactaattctgccgctcggtggtggtggcacacgc
ctttaatcccagcactcgggaggcagaggcagcggatttctgagttcgag
gccagcctggtctacaaagtgagttccaggacagccagggctatacagaa
aaaccctgtcttcaaaaacaaaaacaaaaacaaaaacaaaacaaaaaaaa
aagactaattctgtgtgctaccctctgctggctgcagggaactcatgtgc
tacatataagctgtgaatccggggatcctccagcccagctacaatgttta
caatcttcttacccactaacccagtagtgcaggactctcacaaagtttag
aactaacctttagtcctcctatccacaatggtgaacctgttcaggggtgg
aatgacagtctttcaatatctctgtccccagctgcatttgacatactgga
aaatgcttgactaaacgacaaaaaccccatgaatccaggaaccacctgtt
gcatactagaaagagatctaataaagttgcctgtttgtaaaacattgtaa
cagaactccagagcagcgttctgctcttgtgtcagcagcagctcaggaag
gccaaactgactccaaccactctactactgacagaacagttatgtcgtgg
tctcctcacagctgggtcattttcagcaactgctacaagcttacttaata
gcctggcctggtgaatttaccaattcaagtttaaaacaacttccttgggc
aaacatgggggtatgacttgggtggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124746013_124746825
seq2: B6Ng01-209I18.b_46_863

seq1  GAATTCTACAAATGAAGAGGCTGGAGTCCCTAAGGGAAAAATGCAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAATGAAGAGGCTGGAGTCCCTAAGGGAAAAATGCAACTTG  50

seq1  TCCAAGTTGCACAGCGGCAGCAGTCGGGGCTGCCTCTTGCCCTGGACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTGCACAGCGGCAGCAGTCGGGGCTGCCTCTTGCCCTGGACGCT  100

seq1  GTTGCACAGACGCCCTTTAGGGGTGTTTCCTCTTGTGATGAGCCTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGACGCCCTTTAGGGGTGTTTCCTCTTGTGATGAGCCTGTGGA  150

seq1  TACAGGCGCGGGGAGTGACGAAAGCGCGGGCACAGGAGAGCAGCAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCGCGGGGAGTGACGAAAGCGCGGGCACAGGAGAGCAGCAAATGG  200

seq1  GAACAGTGTTGGGTTCGCCATGAAGACAGGGTGCTGAGCTACCCCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGTTGGGTTCGCCATGAAGACAGGGTGCTGAGCTACCCCTGTGG  250

seq1  GGCATGCAGGGTGACATGCAGAGGCCATGTTGGGGTTCTGGCCTAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCAGGGTGACATGCAGAGGCCATGTTGGGGTTCTGGCCTAAAAGC  300

seq1  ATACAAAGCCCCTTCAGGGAACAAACCCTGTCTATGCCCCGCCCCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGCCCCTTCAGGGAACAAACCCTGTCTATGCCCCGCCCCCACCC  350

seq1  CCAGCATCTTTTCTTCCCTAGGCCTCATTTTCCATGTTTGTGGTATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTTTTCTTCCCTAGGCCTCATTTTCCATGTTTGTGGTATATAA  400

seq1  AGCCCAGAGCAATCTGCATCCCTGGGACTTCAGGCACTGCTGTCCTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGCAATCTGCATCCCTGGGACTTCAGGCACTGCTGTCCTCACG  450

seq1  ACTCTACCTATGACATGTGCGCTCTAGGTTAAGCTCAGAGGGCTTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCTATGACATGTGCGCTCTAGGTTAAGCTCAGAGGGCTTCCTGG  500

seq1  AGGCGCAGGCTTCCTGAGAAGGTTTTAAAGGAGAGAAAAAGCTTCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCAGGCTTCCTGAGAAGGTTTTAAAGGAGAGAAAAAGCTTCCAGTG  550

seq1  TCCAAGATGAGAGCATTGCAGGTCAGGGAGGGTAGTGTGATGGACGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATGAGAGCATTGCAGGTCAGGGAGGGTAGTGTGATGGACGGGAG  600

seq1  GGTGGATCCCATCTGTCTTCATGTCCAAGCCTCTGCAGTGGAGCAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCCCATCTGTCTTCATGTCCAAGCCTCTGCAGTGGAGCAGACAG  650

seq1  T-GGGGCCCACCACCCAGGGTCCAGCAGAGGAGGCA-GGAGCAGCGTGAG  698
      | |||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TGGGGGCCCACCACCCAGGGTCCAGCAGAGGAGGGAGGGAGCAGCGTGAG  700

seq1  GAGGTGGCCTGTGAGGGTCTTGAAGAATAAGTGAAGATTTCCCCAGCTGG  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGTGGCCTGTGAGGGTCTTGAAGAATAAATGAAGATTTCCCCAGCTGG  750

seq1  CAG-AGGCTGCAGTT-GGAGGAACTTTTCAAGAAAGGGGAAGATCAG-AT  795
      ||| ||||||||||| |||||||||||||| |||||||||||||||| ||
seq2  CAGAAGGCTGCAGTTGGGAGGAACTTTTCATGAAAGGGGAAGATCAGAAT  800

seq1  ACAGAGTCAGAAGGAGTA  813
       | |||||||| ||||||
seq2  CCTGAGTCAGAGGGAGTA  818

seq1: chr8_124902223_124903194
seq2: B6Ng01-209I18.g_63_1042 (reverse)

seq1  CCCCTC--CCCAAGTCATA-CCCCATGTTTGCCCAAG--AGTTGTTTT-A  44
      ||||||  ||||||||||| |||||||||||||||||  ||||||||| |
seq2  CCCCTCCACCCAAGTCATACCCCCATGTTTGCCCAAGGAAGTTGTTTTAA  50

seq1  ACCTGAATTGGTAAATTCACCAGGCCAGGCTATTAAGT-AGCTTGTAGCA  93
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTTGAATTGGTAAATTCACCAGGCCAGGCTATTAAGTAAGCTTGTAGCA  100

seq1  GTTGCTGAAAATGACCCAGCTGTGAGGAGACCACGACATAACTGTTCTGT  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAAAATGACCCAGCTGTGAGGAGACCACGACATAACTGTTCTGT  150

seq1  CAGTAGTAGAGTGGTTGGAGTCAGTTTGGCCTTCCTGAGCTGCTGCTGAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAGAGTGGTTGGAGTCAGTTTGGCCTTCCTGAGCTGCTGCTGAC  200

seq1  ACAAGAGCAGAACGCTGCTCTGGAGTTCTGTTACAATGTTTTACAAACAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCAGAACGCTGCTCTGGAGTTCTGTTACAATGTTTTACAAACAG  250

seq1  GCAACTTTATTAGATCTCTTTCTAGTATGCAACAGGTGGTTCCTGGATTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTATTAGATCTCTTTCTAGTATGCAACAGGTGGTTCCTGGATTC  300

seq1  ATGGGG-TTTTGTCGTTTAGTCAAGCATTTTCCAGTATGTCAAATGCAGC  342
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTTTTGTCGTTTAGTCAAGCATTTTCCAGTATGTCAAATGCAGC  350

seq1  TGGGGACAGAGATATTGAAAGACTGTCATTCCACCCCTGAACAGGTTCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGAGATATTGAAAGACTGTCATTCCACCCCTGAACAGGTTCAC  400

seq1  CATTGTGGATAGGAGGACTAAAGGTTAGTTCTAAACTTTGTGAGAGTCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGATAGGAGGACTAAAGGTTAGTTCTAAACTTTGTGAGAGTCCT  450

seq1  GCACTACTGGGTTAGTGGGTAAGAAGATTGTAAACATTGTAGCTGGGCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTGGGTTAGTGGGTAAGAAGATTGTAAACATTGTAGCTGGGCTG  500

seq1  GAGGATCCCCGGATTCACAGCTTATATGTAGCACATGAGTTCCCTGCAGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCCCGGATTCACAGCTTATATGTAGCACATGAGTTCCCTGCAGC  550

seq1  CAGCAGAGGGTAGCACACAGAATTAGTCTTTTTTTTTTGTTTTGTTTTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGGTAGCACACAGAATTAGTCTTTTTTTTTTGTTTTGTTTTTG  600

seq1  TTTTTGTTTTTGTTTTTGAAGACAGGGTTTTTCTGTATAGCCCTGGCTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTGAAGACAGGGTTTTTCTGTATAGCCCTGGCTGT  650

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCT  700

seq1  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACCACCGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACCACCGA  750

seq1  GCGGCAGAATTAGTCTTAACAGAGAATACTGATACCTAGAGAGACAGTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGAATTAGTCTTAACAGAGAATACTGATACCTAGAGAGACAGTGG  800

seq1  ACCTTTTTGGAGCATGGCTGGAGATCAGTCCCTCTACTGATTTCCCAGTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTGGAGCATGGCTGGAGATCAGTCCCTCTACTGATTTCCCAGTA  850

seq1  TGGGCTTTTGGAAACAAGATCCCAACTTATAACAGCCTTCAAACAAACTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTGGAAACAAGATCCCAACTTATAACAGCCTTCAAACAAACTA  900

seq1  TTGGAGTTTGTGTGCTGCAGTTAGATGGACAGAGTAATGCACAGTGCAAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTGTGTGCTGCAGTTAGATGGACAGAGTAATGCACAGTGCAAG  950

seq1  AAACAAGATTCCTAACTTAGAGAGGAATTC  972
      ||||||||||||||||||||||||||||||
seq2  AAACAAGATTCCTAACTTAGAGAGGAATTC  980