BAC Information

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BAC

Clone NameB6Ng01-209M23
Chromosome8 (Build37)
Map Location 55,606,229 - 55,722,148
singlet/doubletdoublet
Overlap geneSpcs3, Asb5, Spata4, Wdr17
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209M23.bB6Ng01-209M23.g
ACCGA028329GA028330
length1,108600
definitionB6Ng01-209M23.b B6Ng01-209M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,606,229 - 55,607,329)(55,721,549 - 55,722,148)
sequence
gaattcaacccagcctgttttcctattttattttcaacagtttctaaagc
tgttactttcctttcagcatgagcacagtaaatgcaatagggccagacac
aaaagcacacagttgtctagttaagactgagagggatacgctgggtgcta
catgttcaagttcatttctaactgcaacctctttactaacactcttgcaa
tcatcttcttttcatagaatcacctctgggctcagccactgaagcactga
gtcttctctaaaacactgagaccagagatgcttatcacacatacgaactt
agcaagttacagcatcatcacagactgataaagccgtgcacgcacgcaat
ggagttcctgagagacagggctagtggcatgccggagcagctgctccctc
agctgctaaaaacaaaggccatttgccatattgggctttccttaccaaac
acctgaactgggcttttcagatacataaatgtcagtgttagatagtctgt
gctcaaccaacatagccactcatcacaaaggtacagtgaactgttaactg
aactgaggtgtggctttaatgccctaggcttgggagggcttccttagcta
ggacacacccagaccctctaactctgacgcttgcagactttacacatcta
ctatctcatcgatgtataaagctcacttttgtaggtgtaaaatgtagcag
aagctcagatccttatgaactctgttaatctttccatcacttttctgact
tcagatcactaaggtggtttcctgttcgaaatctgctgaacagaaaacat
atcacaactttctatcctagtaaaggatccttttatagacaaagaaacag
agaccccgaaatgtttaaggaacgtgctggtgccaatctcaaggtgcgcc
tctgacctttctgctggtaagaaaacctcaaacacatgcatttgtaagaa
ctgtaccaccacatacaagagctgtttgatgaatgtcactaagcacatga
ggtaaacagaaacaaaatgctaaattatgctatgctagtaaacagccctt
ttaaggttacttagaatggtggcgtagtgttcctactccttgcatttaag
aagtagcc

gaattccacatcaacctacattcaaactgagacaacctcaggaactagga
agcaaaaaggcaaagaataaaagcaaaagttactgtgtgtaaggtacgag
agagttcacagaatatgcctgcattaaagagaactcagtaaataagaaag
agaactttaaaaggtctcagtattaggggttttccctttatttacattta
tgttatgtgtgttggagttttgcctgcatgtatgtctatatgagagtgtc
agatcttggagctgcagacaattgtgagctgccaagtgggtgctgggata
tgaactctggtcctttggaagaacagtcagtgcccttaaccactgaacca
tctttccagtccttgtggctttctttgtgataattactcccttttatgtc
ctacagcctattttcattttcttaatgcacttaaatgtccaacttcccac
tgctatgttctatttaattgacacttcctttctcctcttatttcctgtcc
tctggcctcatttcttatgttcactctcctctctgtgttctagtatttgt
tctacagaaggttcatttgtaaatggtgagtgtgtgagtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55606229_55607329
seq2: B6Ng01-209M23.b_47_1154

seq1  GAATTCAACCCAGCCTGTTTTCCTATTTTATTTTCAACAGTTTCTAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAGCCTGTTTTCCTATTTTATTTTCAACAGTTTCTAAAGC  50

seq1  TGTTACTTTCCTTTCAGCATGAGCACAGTAAATGCAATAGGGCCAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTTCCTTTCAGCATGAGCACAGTAAATGCAATAGGGCCAGACAC  100

seq1  AAAAGCACACAGTTGTCTAGTTAAGACTGAGAGGGATACGCTGGGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACACAGTTGTCTAGTTAAGACTGAGAGGGATACGCTGGGTGCTA  150

seq1  CATGTTCAAGTTCATTTCTAACTGCAACCTCTTTACTAACACTCTTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAGTTCATTTCTAACTGCAACCTCTTTACTAACACTCTTGCAA  200

seq1  TCATCTTCTTTTCATAGAATCACCTCTGGGCTCAGCCACTGAAGCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCTTTTCATAGAATCACCTCTGGGCTCAGCCACTGAAGCACTGA  250

seq1  GTCTTCTCTAAAACACTGAGACCAGAGATGCTTATCACACATACGAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCTAAAACACTGAGACCAGAGATGCTTATCACACATACGAACTT  300

seq1  AGCAAGTTACAGCATCATCACAGACTGATAAAGCCGTGCACGCACGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTACAGCATCATCACAGACTGATAAAGCCGTGCACGCACGCAAT  350

seq1  GGAGTTCCTGAGAGACAGGGCTAGTGGCATGCCGGAGCAGCTGCTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCTGAGAGACAGGGCTAGTGGCATGCCGGAGCAGCTGCTCCCTC  400

seq1  AGCTGCTAAAAACAAAGGCCATTTGCCATATTGGGCTTTCCTTACCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTAAAAACAAAGGCCATTTGCCATATTGGGCTTTCCTTACCAAAC  450

seq1  ACCTGAACTGGGCTTTTCAGATACATAAATGTCAGTGTTAGATAGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACTGGGCTTTTCAGATACATAAATGTCAGTGTTAGATAGTCTGT  500

seq1  GCTCAACCAACATAGCCACTCATCACAAAGGTACAGTGAACTGTTAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACCAACATAGCCACTCATCACAAAGGTACAGTGAACTGTTAACTG  550

seq1  AACTGAGGTGTGGCTTTAATGCCCTAGGCTTGGGAGGGCTTCCTTAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGTGTGGCTTTAATGCCCTAGGCTTGGGAGGGCTTCCTTAGCTA  600

seq1  GGACACACCCAGACCCTCTAACTCTGACGCTTGCAGACTTTACACATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCCAGACCCTCTAACTCTGACGCTTGCAGACTTTACACATCTA  650

seq1  CTATCTCATCGATGTATAAAGCTCACTTTTGTAGGTGTAAAATGTAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCATCGATGTATAAAGCTCACTTTTGTAGGTGTAAAATGTAGCAG  700

seq1  AAGCTCAGATCCTTATGAACTCTGTTAATCTTTCCATCACTTTTCTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGATCCTTATGAACTCTGTTAATCTTTCCATCACTTTTCTGACT  750

seq1  TCAGATCACTAAGGTGGTTTCCTGTTCGAAATCTGCTGAACAGAAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCACTAAGGTGGTTTCCTGTTCGAAATCTGCTGAACAGAAAACAT  800

seq1  ATCACAACTTTCTATCCTAGTAAAGGATCCTTTTATAGACAAAGAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTTTCTATCCTAGTAAAGGATCCTTTTATAGACAAAGAAACAG  850

seq1  AGACCCCGAAATGTTTAAGGAACGTGCTGGTGCCAATCTCAAGGTGCGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCGAAATGTTTAAGGAACGTGCTGGTGCCAATCTCAAGGTGCGCC  900

seq1  TCTGACCTTTCTGCTGGTAAGAAAACCTCAAACACATGCATTTGTAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTTCTGCTGGTAAGAAAACCTCAAACACATGCATTTGTAAGAA  950

seq1  CTGTACCACCACATACAAGAGCTGTTTGATGAATGTCACTAAGCACATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCACCACATACAAGAGCTGTTTGATGAATGTCACTAAGCACATGA  1000

seq1  GGTAAACAGAA--CAAATGCTAATTTATGCTATTGCTAGTAAACAGCCCT  1048
      |||||||||||   ||||||||| |||||||| |||||||||||||||||
seq2  GGTAAACAGAAACAAAATGCTAAATTATGCTA-TGCTAGTAAACAGCCCT  1049

seq1  TTT-AGGTTACTTTAGAATG--TGCGTAGTGT--CTACT-CTTGCATTTA  1092
      ||| ||||||| ||||||||   |||||||||  ||||| ||||||||||
seq2  TTTAAGGTTAC-TTAGAATGGTGGCGTAGTGTTCCTACTCCTTGCATTTA  1098

seq1  AG-AGTAGCC  1101
      || |||||||
seq2  AGAAGTAGCC  1108


seq1: chr8_55721549_55722148
seq2: B6Ng01-209M23.g_64_663 (reverse)

seq1  CACACACACACACTCACACACTCACCATTTACAAATGAACCTTCTGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCACACACTCACCATTTACAAATGAACCTTCTGTAGA  50

seq1  ACAAATACTAGAACACAGAGAGGAGAGTGAACATAAGAAATGAGGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTAGAACACAGAGAGGAGAGTGAACATAAGAAATGAGGCCAGA  100

seq1  GGACAGGAAATAAGAGGAGAAAGGAAGTGTCAATTAAATAGAACATAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAAATAAGAGGAGAAAGGAAGTGTCAATTAAATAGAACATAGCA  150

seq1  GTGGGAAGTTGGACATTTAAGTGCATTAAGAAAATGAAAATAGGCTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGTTGGACATTTAAGTGCATTAAGAAAATGAAAATAGGCTGTAG  200

seq1  GACATAAAAGGGAGTAATTATCACAAAGAAAGCCACAAGGACTGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAAGGGAGTAATTATCACAAAGAAAGCCACAAGGACTGGAAAGA  250

seq1  TGGTTCAGTGGTTAAGGGCACTGACTGTTCTTCCAAAGGACCAGAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTGGTTAAGGGCACTGACTGTTCTTCCAAAGGACCAGAGTTCA  300

seq1  TATCCCAGCACCCACTTGGCAGCTCACAATTGTCTGCAGCTCCAAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCACCCACTTGGCAGCTCACAATTGTCTGCAGCTCCAAGATCT  350

seq1  GACACTCTCATATAGACATACATGCAGGCAAAACTCCAACACACATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTCATATAGACATACATGCAGGCAAAACTCCAACACACATAACA  400

seq1  TAAATGTAAATAAAGGGAAAACCCCTAATACTGAGACCTTTTAAAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAATAAAGGGAAAACCCCTAATACTGAGACCTTTTAAAGTTCT  450

seq1  CTTTCTTATTTACTGAGTTCTCTTTAATGCAGGCATATTCTGTGAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATTTACTGAGTTCTCTTTAATGCAGGCATATTCTGTGAACTCT  500

seq1  CTCGTACCTTACACACAGTAACTTTTGCTTTTATTCTTTGCCTTTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTACCTTACACACAGTAACTTTTGCTTTTATTCTTTGCCTTTTTGCT  550

seq1  TCCTAGTTCCTGAGGTTGTCTCAGTTTGAATGTAGGTTGATGTGGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCCTGAGGTTGTCTCAGTTTGAATGTAGGTTGATGTGGAATTC  600


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