BAC Information

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BAC

Clone NameB6Ng01-210L03
Chromosome8 (Build37)X (Build37)
Map Location 31,810,708 - 31,811,90976,275,680 - 76,276,199
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210L03.bB6Ng01-210L03.g
ACCGA028967GA028968
length1,2051,141
definitionB6Ng01-210L03.b B6Ng01-210L03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,810,708 - 31,811,909)(76,275,680 - 76,276,199)
sequence
gaattcaatgtgtcttgcaaacacacattgaactaagagtggtacactgc
catggaattctggagaaggttatggcaagtagcaccatcacatgcctgca
gctggatgccatggtcactctgagattttctaagtcttgcaaaaagcaga
gtggatggaagatggaaggcgaggacacgctcaagctgttcactgattac
tgaaccactagaatttcccccaccccctgccaactaagcttcttttaacc
tcagatttgcacgtacagcccaggttggtgcatcaaggtagctcagaaga
aagtccaacatggtgctggctgagtgcatgtaaatggtcctgcctggctc
ccaatctcgtatcctcttgaaggagacgtcataaagtgtctttagaaagg
agcgccaagggtttcaaagtggtaaggaggctttgaaagagcttcaggat
cagtgatgtgcttgccagaactgaagtgataatggagtgcatttgcttcc
acatcctatagaccagccatacaaagaggacctccagccttgagacatga
cctttgattgacagagggagcagatctgtcagaatccctaggagaaaatc
aaagagttctaaacttaacttcgttttctctcattcttttgtctggggag
agtcctacattgattaaatccaatggaagacagagttaaaggcatctttg
agtctatttttgttgcccaaacaccctgacaccagaattagaatacatag
ggatagataaacctgccaaggtgccctgaagtttccataaagtttgattt
agtttgcatttcagtatttctgggctatggtaccccaaggtttgtgagtg
ttacatcatgacgaagacatcatgtatagtgttaacatccaagtcacatg
agaaacttccattgactaagaacagttgttttcaacatgtagaaatcatt
acgtaccccaataatattagattatatttctaacagagaaagtgatatgg
ggactgtcaaataagaattggtgatttttattttcaaacagttgcctgta
gatataaacatatgaactagaccttttgtaattcttttatgttctaccac
gggattattttcaacactcctgtacttcagtcattcattaaataacctac
ctattctgaattccgaattcaattggccagcagtgatagccagaaagcct
gcctt

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgggttcttggattcggttagcgagaattttattaaggatttttgc
atcaatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagttccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctttccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctattgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctttagtgagtctagctaagggtttatcta
tcttgttgatttttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttaatttcacccctgagttgattat
ttcctgccgtctactcctcttggttgaatttgcttcctttttttctagag
cttttagatggtgttgtcaagctgctagtatgtgctctctcccgtttctt
tttggaggtactcagagctatgagttccctcttagaaatgctttcattgt
gtccaaagttgggtacgttgtgcctccatttcaataaactctaaaaagtt
cttttaatttcttttccttatcccttctttgacccaagggtatctcattg
acaagaagtggttgttcagttccacgtgaatgttggctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_31810708_31811909
seq2: B6Ng01-210L03.b_44_1248

seq1  GAATTCAATGTGTCTTGCAAACACACATTGAACTAAGAGTGGTACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGTCTTGCAAACACACATTGAACTAAGAGTGGTACACTGC  50

seq1  CATGGAATTCTGGAGAAGGTTATGGCAAGTAGCACCATCACATGCCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTCTGGAGAAGGTTATGGCAAGTAGCACCATCACATGCCTGCA  100

seq1  GCTGGATGCCATGGTCACTCTGAGATTTTCTAAGTCTTGCAAAAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGCCATGGTCACTCTGAGATTTTCTAAGTCTTGCAAAAAGCAGA  150

seq1  GTGGATGGAAGATGGAAGGCGAGGACACGCTCAAGCTGTTCACTGATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGAAGATGGAAGGCGAGGACACGCTCAAGCTGTTCACTGATTAC  200

seq1  TGAACCACTAGAATTTCCCCCACCCCCTGCCAACTAAGCTTCTTTTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTAGAATTTCCCCCACCCCCTGCCAACTAAGCTTCTTTTAACC  250

seq1  TCAGATTTGCACGTACAGCCCAGGTTGGTGCATCAAGGTAGCTCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTGCACGTACAGCCCAGGTTGGTGCATCAAGGTAGCTCAGAAGA  300

seq1  AAGTCCAACATGGTGCTGGCTGAGTGCATGTAAATGGTCCTGCCTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAACATGGTGCTGGCTGAGTGCATGTAAATGGTCCTGCCTGGCTC  350

seq1  CCAATCTCGTATCCTCTTGAAGGAGACGTCATAAAGTGTCTTTAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCGTATCCTCTTGAAGGAGACGTCATAAAGTGTCTTTAGAAAGG  400

seq1  AGCGCCAAGGGTTTCAAAGTGGTAAGGAGGCTTTGAAAGAGCTTCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCAAGGGTTTCAAAGTGGTAAGGAGGCTTTGAAAGAGCTTCAGGAT  450

seq1  CAGTGATGTGCTTGCCAGAACTGAAGTGATAATGGAGTGCATTTGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGTGCTTGCCAGAACTGAAGTGATAATGGAGTGCATTTGCTTCC  500

seq1  ACATCCTATAGACCAGCCATACAAAGAGGACCTCCAGCCTTGAGACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTATAGACCAGCCATACAAAGAGGACCTCCAGCCTTGAGACATGA  550

seq1  CCTTTGATTGACAGAGGGAGCAGATCTGTCAGAATCCCTAGGAGAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATTGACAGAGGGAGCAGATCTGTCAGAATCCCTAGGAGAAAATC  600

seq1  AAAGAGTTCTAAACTTAACTTCGTTTTCTCTCATTCTTTTGTCTGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTCTAAACTTAACTTCGTTTTCTCTCATTCTTTTGTCTGGGGAG  650

seq1  AGTCCTACATTGATTAAATCCAATGGAAGACAGAGTTAAAGGCATCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACATTGATTAAATCCAATGGAAGACAGAGTTAAAGGCATCTTTG  700

seq1  AGTCTATTTTTGTTGCCCAAACACCCTGACACCAGAATTAGAATACATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTTTTGTTGCCCAAACACCCTGACACCAGAATTAGAATACATAG  750

seq1  GGATAGATAAACCTGCCAAGGTGCCCTGAAGTTTCCATAAAGTTTGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATAAACCTGCCAAGGTGCCCTGAAGTTTCCATAAAGTTTGATTT  800

seq1  AGTTTGCATTTCAGTATTTCTGGGCTATGGTACCCCAAGGTTTGTGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCATTTCAGTATTTCTGGGCTATGGTACCCCAAGGTTTGTGAGTG  850

seq1  TTACATCATGACGAAGACATCATGTATAGTGTTAACATCCAAGTCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATGACGAAGACATCATGTATAGTGTTAACATCCAAGTCACATG  900

seq1  AGAAACTTCCATTGACTAAGAACAGTTGTTTTCAACATGTAGAAATCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCCATTGACTAAGAACAGTTGTTTTCAACATGTAGAAATCATT  950

seq1  ACGTACCCCAATAATATTAGATTATATTTCTAACAGAGAAAGTGATATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACCCCAATAATATTAGATTATATTTCTAACAGAGAAAGTGATATGG  1000

seq1  GGACTGTCAAATAAGAATTGGTTGATTTTATTTTCAAACAGTTGCCTGTA  1050
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  GGACTGTCAAATAAGAATTGGTGATTTTTATTTTCAAACAGTTGCCTGTA  1050

seq1  GAATATAAACAATATGAACCTAGACC-TTTGTAATTC-TTTATGTTCTA-  1097
      | |||||||| ||||||| ||||||| |||||||||| ||||||||||| 
seq2  G-ATATAAAC-ATATGAA-CTAGACCTTTTGTAATTCTTTTATGTTCTAC  1097

seq1  CAC-GGAATATTTTCAACACTTCCTGTAC-TCAGTCATCATTTAAATAA-  1144
      ||| ||| |||||||||||| |||||||| ||||||||   |||||||| 
seq2  CACGGGATTATTTTCAACAC-TCCTGTACTTCAGTCATTCATTAAATAAC  1146

seq1  CTA-CTATTCTGTATTTCCGATTCAATTGTCCAGTAGTAATAGGGCAGAA  1193
      ||| |||||||| ||| |  ||||||||| |||| ||| ||| | |||||
seq2  CTACCTATTCTGAATTCCGAATTCAATTGGCCAGCAGTGATA-GCCAGAA  1195

seq1  AG-CTGCCTT  1202
      || |||||||
seq2  AGCCTGCCTT  1205


seq1: chrX_76275680_76276199
seq2: B6Ng01-210L03.g_683_1206 (reverse)

seq1  GAAAGCCAACATTCACGTGGAAACTGAACAA-CAC-TCTTCTCAAT--GA  46
      |||||||||||||||||||| |||||||||| ||| |||| |||||  ||
seq2  GAAAGCCAACATTCACGTGG-AACTGAACAACCACTTCTTGTCAATGAGA  49

seq1  TACC--TTGGTCAAGGAAGGAATAAAG-AAAGAAATTAAA--GACTTTTT  91
      ||||  | |||||| ||||| |||| | ||||||||||||   |||||||
seq2  TACCCTTGGGTCAAAGAAGGGATAAGGAAAAGAAATTAAAAGAACTTTTT  99

seq1  AGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAA  141
      |||||||| || ||||| || ||||||||||||||  |||| ||||||||
seq2  AGAGTTTATTG-AAATGGAGGCACAACGTACCCAA--CTTT-GGACACAA  145

seq1  TGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTACCTCCAAGAAG  191
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TGAAAGCATTTCTAAGAGGG-AACTCATAGCTCTGAGTACCTCCAAAAAG  194

seq1  AAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-CATCTAAAAGCTC  240
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACGGGAGAGAGCACATACTAGCAGCTTGACAACACCATCTAAAAGCTC  244

seq1  TAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATA  290
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGAAAAAAAGGAAGCAAATTCAACCAAGAGGAGTAGACGGCAGGAAATA  294

seq1  ATCAAACTCAGGGGTGAAATTAACCAAGTGGAAACAAGAAGAACTATTCA  340
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-AACTCAGGGGTGAAATTAACCAAGTGGAAACAAGAAGAACTATTCA  343

seq1  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAAATCAACAAGATA  389
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAATCAACAAGATA  393

seq1  GATAAGCCCTTAGCTAGACTCACTAGAGGGCAAAGGGACAAAATCCTAAT  439
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATAAACCCTTAGCTAGACTCACTAAAGGGCAAAGGGACAAAATCCTAAT  443

seq1  CAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  489
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAACAAAATCAGAAATGAAAAGGGAGACATAACAATAGATCCTGAAGAAA  493

seq1  TCCAAAACACCATCAGATCCTTCTACAAAAG  520
      |||||||||||||||||||||||||||||||
seq2  TCCAAAACACCATCAGATCCTTCTACAAAAG  524


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